View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4978-Insertion-13 (Length: 508)

Name: NF4978-Insertion-13
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4978-Insertion-13
NF4978-Insertion-13
[»] chr1 (6 HSPs)
chr1 (6-508)||(46766150-46766654)
chr1 (248-327)||(4868430-4868511)
chr1 (277-332)||(29045902-29045957)
chr1 (247-344)||(32515398-32515498)
chr1 (277-344)||(4549531-4549599)
chr1 (277-341)||(30259476-30259540)
[»] chr3 (3 HSPs)
chr3 (247-354)||(37273137-37273247)
chr3 (277-353)||(21574494-21574570)
chr3 (276-343)||(36200110-36200177)
[»] chr2 (4 HSPs)
chr2 (277-349)||(34652026-34652098)
chr2 (278-353)||(1939323-1939398)
chr2 (297-341)||(16867755-16867799)
chr2 (277-341)||(41809235-41809299)
[»] chr7 (3 HSPs)
chr7 (277-359)||(33645951-33646032)
chr7 (277-330)||(12234879-12234932)
chr7 (298-354)||(25596036-25596092)
[»] chr6 (7 HSPs)
chr6 (250-332)||(2460111-2460196)
chr6 (280-344)||(281841-281905)
chr6 (277-333)||(7785734-7785790)
chr6 (277-331)||(9667975-9668029)
chr6 (277-359)||(28088213-28088294)
chr6 (277-322)||(1019600-1019645)
chr6 (277-329)||(30523965-30524017)
[»] chr4 (5 HSPs)
chr4 (250-332)||(27123312-27123397)
chr4 (247-344)||(2996586-2996686)
chr4 (281-322)||(55547038-55547079)
chr4 (277-349)||(2592299-2592371)
chr4 (312-348)||(14011243-14011279)
[»] chr5 (5 HSPs)
chr5 (277-359)||(5531033-5531114)
chr5 (277-336)||(4273367-4273426)
chr5 (277-344)||(10272421-10272488)
chr5 (281-331)||(29590623-29590673)
chr5 (297-341)||(33533549-33533593)
[»] scaffold0153 (2 HSPs)
scaffold0153 (277-344)||(6484-6551)
scaffold0153 (277-344)||(13504-13571)
[»] chr8 (3 HSPs)
chr8 (277-343)||(43504765-43504831)
chr8 (278-330)||(8806759-8806811)
chr8 (283-331)||(12361218-12361266)


Alignment Details
Target: chr1 (Bit Score: 476; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 6 - 508
Target Start/End: Original strand, 46766150 - 46766654
Alignment:
Q  6 caaacatgaccctgccccaaaagggggtcccaagcttttctttataatattgttggttagaccaaaagtacaagattctaaggctgtaactgatttatat 105  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  46766150 caaacatgaccctgccccaaaagggg-tcccaagcttttctttataatattgttggttagaccaaaagtacaagattctgaggctgtaactgatttatat 46766248  T
Q  106 ggacttgaacatattagagtggagtagtggatcattgcatcatgcaatgaatacatacagcctaaagaatatacctatatgatctttgacattagtctgc 205  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46766249 ggacttgaacataatagagtggagtagtggatcattgcatcatgcaatgaatacatacagcctaaagaatatacctatatgatctttgacattagtctgc 46766348  T
Q  206 ttgtatttacttaaccgagcttatctattgttatca---ggctcagcacttgtgagactgcttgcgagagttataaacaacttatgacttgtctataagt 302  Q
    ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46766349 ttgtatttacttaaccgagcttatctattgttatcatcaggctcagcacttgtgagactgcttgcgagagttataaacaacttatgacttgtctataagt 46766448  T
Q  303 tgcttttaacttatttccattagctctccaagattgcttatgtaaaaagtttctagcgtatgcataagcacttatgccagaagcgctcaattaatttgaa 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46766449 tgcttttaacttatttccattagctctccaagattgcttatgtaaaaagtttctagcgtatgcataagcacttatgccagaagcgctcaattaatttgaa 46766548  T
Q  403 aggcaacataaacaaactatttttacagtatagtctgaaaagtcaatatctcattctcttatacattgaaagtccttttgttcttttcttattgtcatta 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46766549 aggcaacataaacaaactatttttacagtatagtctgaaaagtcaatatctcattctcttatacattgaaagtccttttgttcttttcttattgtcatta 46766648  T
Q  503 gaatta 508  Q
    ||||||    
T  46766649 gaatta 46766654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 248 - 327
Target Start/End: Complemental strand, 4868511 - 4868430
Alignment:
Q  248 gcacttgtgagactgcttgcgagagtt-at-aaacaacttatgacttgtctataagttgcttttaacttatttccattagct 327  Q
    ||||||||||||||| ||| ||||||| || |||||||||||||| |||| |||||||| ||| ||||||||| ||| ||||    
T  4868511 gcacttgtgagactgtttgagagagtttatgaaacaacttatgacatgtcaataagttgttttcaacttatttacataagct 4868430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 332
Target Start/End: Original strand, 29045902 - 29045957
Alignment:
Q  277 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctcca 332  Q
    |||||||||||||| |||| |||||||||||||||| || |||||| | |||||||    
T  29045902 aaacaacttatgacatgtccataagttgcttttaacgtacttccatcatctctcca 29045957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 344
Target Start/End: Original strand, 32515398 - 32515498
Alignment:
Q  247 agcacttgtgagactgcttgcgagag-ttat--aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttat 343  Q
    |||||||||||||||| ||| ||||| ||||  ||||| | |||||| |||| |||||||| ||| ||||||| || || ||||||||| ||| ||||||    
T  32515398 agcacttgtgagactgtttgggagagcttatggaaacagcgtatgacatgtcaataagttgttttcaacttatatctataagctctccatgatagcttat 32515497  T
Q  344 g 344  Q
    |    
T  32515498 g 32515498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 344
Target Start/End: Original strand, 4549531 - 4549599
Alignment:
Q  277 aaacaacttatgacttgtctat-aagttgcttttaacttatttccattagctctccaagattgcttatg 344  Q
    |||||||||||||| ||||||| |||||| ||| |||  ||||| || ||||||||| |||||||||||    
T  4549531 aaacaacttatgacatgtctataaagttgttttcaacaaatttcaataagctctccaggattgcttatg 4549599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 341
Target Start/End: Original strand, 30259476 - 30259540
Alignment:
Q  277 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgctt 341  Q
    |||||||||| ||| |||| |||| ||| ||| ||||||||||||| ||||||||| ||| ||||    
T  30259476 aaacaacttacgacatgtcaataaattgttttcaacttatttccataagctctccatgatagctt 30259540  T

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Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 247 - 354
Target Start/End: Complemental strand, 37273247 - 37273137
Alignment:
Q  247 agcacttgtgagactgcttgcgagag-ttat--aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttat 343  Q
    |||||| ||||||||| ||| ||||| ||||  |||||||||||||| |||| |||||||| ||| ||||||||||||| || |||||||||| ||||||    
T  37273247 agcactggtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataagttctccaagatagcttat 37273148  T
Q  344 gtaaaaagttt 354  Q
    | ||| |||||    
T  37273147 gaaaacagttt 37273137  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 353
Target Start/End: Complemental strand, 21574570 - 21574494
Alignment:
Q  277 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatgtaaaaagtt 353  Q
    |||||||||||||| |||  ||||| |||||||| ||||||||||| ||||||||| | | ||||||  ||||||||    
T  21574570 aaacaacttatgacatgttcataagctgcttttagcttatttccataagctctccatgttagcttataaaaaaagtt 21574494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 343
Target Start/End: Complemental strand, 36200177 - 36200110
Alignment:
Q  276 taaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttat 343  Q
    ||||||||||||||| |||| |||||||| ||| | ||||||||||| |||||| || ||| ||||||    
T  36200177 taaacaacttatgacatgtccataagttgttttcagcttatttccatgagctctacaggatagcttat 36200110  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 277 - 349
Target Start/End: Original strand, 34652026 - 34652098
Alignment:
Q  277 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatgtaaaa 349  Q
    |||||||||||||| |||| ||||| || ||| ||||||||||||| ||||||||||||| ||||||| ||||    
T  34652026 aaacaacttatgacatgtccataagctgttttcaacttatttccataagctctccaagatagcttatgaaaaa 34652098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 353
Target Start/End: Original strand, 1939323 - 1939398
Alignment:
Q  278 aacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatgtaaaaagtt 353  Q
    ||||||||||||| |||| ||||| || ||| ||||||||||||| |||||||||  || ||||||| ||| ||||    
T  1939323 aacaacttatgacatgtccataagctgttttcaacttatttccataagctctccagtatagcttatgaaaacagtt 1939398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 16867799 - 16867755
Alignment:
Q  297 ataagttgcttttaacttatttccattagctctccaagattgctt 341  Q
    |||||||| ||| ||||||||||||| ||||||||||||| ||||    
T  16867799 ataagttgttttcaacttatttccataagctctccaagatagctt 16867755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 341
Target Start/End: Original strand, 41809235 - 41809299
Alignment:
Q  277 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgctt 341  Q
    |||||||||||||| |||  |||||||| ||||| ||||||||||| |||| || ||||| ||||    
T  41809235 aaacaacttatgacatgttcataagttgtttttagcttatttccataagctttctaagatagctt 41809299  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 277 - 359
Target Start/End: Original strand, 33645951 - 33646032
Alignment:
Q  277 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatgtaaaaagtttctagc 359  Q
    |||||||||||||| ||||||||||||| |||||  |||||||||| |||||||| |||| ||||||| ||| ||||| ||||    
T  33645951 aaacaacttatgacatgtctataagttgtttttaggttatttccataagctctcc-agatagcttatgaaaacagtttatagc 33646032  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 330
Target Start/End: Original strand, 12234879 - 12234932
Alignment:
Q  277 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctc 330  Q
    |||||||||||||| |||||||||| || ||| | ||||||||||| |||||||    
T  12234879 aaacaacttatgacatgtctataagctgttttcagcttatttccataagctctc 12234932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 354
Target Start/End: Complemental strand, 25596092 - 25596036
Alignment:
Q  298 taagttgcttttaacttatttccattagctctccaagattgcttatgtaaaaagttt 354  Q
    ||||||| ||| ||||||||| ||| ||||||||||||| ||||||| ||| |||||    
T  25596092 taagttgttttcaacttattttcataagctctccaagatagcttatgaaaagagttt 25596036  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 250 - 332
Target Start/End: Original strand, 2460111 - 2460196
Alignment:
Q  250 acttgtgagactgcttgcgagag-ttat--aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctcca 332  Q
    ||||||||||||| ||| ||||| ||||  |||||||||||||| ||||| ||||||| ||| ||||||||||||| |||||||||    
T  2460111 acttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagctctcca 2460196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 344
Target Start/End: Original strand, 281841 - 281905
Alignment:
Q  280 caacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatg 344  Q
    ||||||||||| ||||||||||||| ||| | ||||||||||| ||||||| | ||| |||||||    
T  281841 caacttatgacatgtctataagttgttttcagcttatttccatgagctctctaggatagcttatg 281905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 7785734 - 7785790
Alignment:
Q  277 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaa 333  Q
    ||||| |||||||| ||||||||||||| ||| | ||||||||||| ||||||||||    
T  7785734 aaacagcttatgacatgtctataagttgttttcagcttatttccataagctctccaa 7785790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 331
Target Start/End: Original strand, 9667975 - 9668029
Alignment:
Q  277 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctcc 331  Q
    |||||||||||||| |||| ||||| || ||| ||||||||||||| ||||||||    
T  9667975 aaacaacttatgacatgtccataagctgttttcaacttatttccataagctctcc 9668029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 359
Target Start/End: Original strand, 28088213 - 28088294
Alignment:
Q  277 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatgtaaaaagtttctagc 359  Q
    ||||||||||| || |||||||| |||| ||| | ||||||||||| ||||||||| ||| ||||||| ||| ||||| ||||    
T  28088213 aaacaacttat-acatgtctataggttgttttgagcttatttccatgagctctccatgatagcttatgaaaacagtttatagc 28088294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 1019600 - 1019645
Alignment:
Q  277 aaacaacttatgacttgtctataagttgcttttaacttatttccat 322  Q
    ||||||||||| || ||||||||||||| ||||| |||||||||||    
T  1019600 aaacaacttataacatgtctataagttgtttttagcttatttccat 1019645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 329
Target Start/End: Complemental strand, 30524017 - 30523965
Alignment:
Q  277 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctct 329  Q
    |||||| ||||||| |||| || ||||||||||| ||||||||||| ||||||    
T  30524017 aaacaaattatgacatgtccattagttgcttttagcttatttccataagctct 30523965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 250 - 332
Target Start/End: Original strand, 27123312 - 27123397
Alignment:
Q  250 acttgtgagactgcttgcgagag-ttat--aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctcca 332  Q
    ||||||||||||| ||| ||||| ||||  |||||||||||||| ||||| ||||||| ||| ||||||||||||| |||||||||    
T  27123312 acttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagctctcca 27123397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 344
Target Start/End: Complemental strand, 2996686 - 2996586
Alignment:
Q  247 agcacttgtgagactgcttgcgagag-ttat--aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttat 343  Q
    ||||||| |||||||| ||| ||||| ||||  |||||||||||||| |||| ||||| |  ||| ||||||||| |||  |||||||||||| ||||||    
T  2996686 agcacttttgagactgtttgagagagcttatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagatagcttat 2996587  T
Q  344 g 344  Q
    |    
T  2996586 g 2996586  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 55547038 - 55547079
Alignment:
Q  281 aacttatgacttgtctataagttgcttttaacttatttccat 322  Q
    |||||||||| ||||||||||||| ||||| |||||||||||    
T  55547038 aacttatgacatgtctataagttgtttttagcttatttccat 55547079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 349
Target Start/End: Original strand, 2592299 - 2592371
Alignment:
Q  277 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatgtaaaa 349  Q
    ||||||||||| |  ||||| ||||||| ||| | ||||||||||| |||||||||| || |||||| |||||    
T  2592299 aaacaacttataatgtgtctgtaagttgttttcagcttatttccataagctctccaaaatagcttatataaaa 2592371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 14011279 - 14011243
Alignment:
Q  312 cttatttccattagctctccaagattgcttatgtaaa 348  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  14011279 cttatttccataagctctccaagatagcttatgtaaa 14011243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 359
Target Start/End: Complemental strand, 5531114 - 5531033
Alignment:
Q  277 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatgtaaaaagtttctagc 359  Q
    |||||||||||||  |||| |||||||| ||||| ||||||||||  ||||||||| ||||||||||| || |||||| ||||    
T  5531114 aaacaacttatgatatgtccataagttgttttta-cttatttccagaagctctccaggattgcttatgaaagaagtttttagc 5531033  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 336
Target Start/End: Original strand, 4273367 - 4273426
Alignment:
Q  277 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagat 336  Q
    ||||| |||||||||||||||||||||| ||| |||||||| | || ||||||| |||||    
T  4273367 aaacagcttatgacttgtctataagttgttttcaacttattgctataagctctcaaagat 4273426  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 344
Target Start/End: Original strand, 10272421 - 10272488
Alignment:
Q  277 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatg 344  Q
    |||||||||||||| ||||| ||||||| ||| | ||||||| ||| | ||||||||||| |||||||    
T  10272421 aaacaacttatgacatgtctgtaagttgttttcagcttattttcataaactctccaagatggcttatg 10272488  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 331
Target Start/End: Original strand, 29590623 - 29590673
Alignment:
Q  281 aacttatgacttgtctataagttgcttttaacttatttccattagctctcc 331  Q
    ||||||||||||||| |||||||| ||| ||||||||||||| | ||||||    
T  29590623 aacttatgacttgtccataagttgttttcaacttatttccataaactctcc 29590673  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 33533549 - 33533593
Alignment:
Q  297 ataagttgcttttaacttatttccattagctctccaagattgctt 341  Q
    |||||||| ||| ||||||||||||| ||||||||||||| ||||    
T  33533549 ataagttgttttcaacttatttccataagctctccaagatagctt 33533593  T

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Target: scaffold0153 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 344
Target Start/End: Original strand, 6484 - 6551
Alignment:
Q  277 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatg 344  Q
    ||||||| |||||| ||||||||||||| ||| |  |||||||||| ||||||||  |||||||||||    
T  6484 aaacaacctatgacatgtctataagttgttttcagtttatttccataagctctccgggattgcttatg 6551  T

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Target: scaffold0153; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 344
Target Start/End: Original strand, 13504 - 13571
Alignment:
Q  277 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatg 344  Q
    ||||||| |||||| ||||||||||||| ||| |  |||||||||| ||||||||  |||||||||||    
T  13504 aaacaacctatgacatgtctataagttgttttcagtttatttccataagctctccgggattgcttatg 13571  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 343
Target Start/End: Complemental strand, 43504831 - 43504765
Alignment:
Q  277 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttat 343  Q
    |||||||||| ||||||| |||||| || ||| | ||||||||||| || |||||||||| ||||||    
T  43504831 aaacaacttacgacttgtttataagctgttttcagcttatttccataagttctccaagatagcttat 43504765  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 330
Target Start/End: Original strand, 8806759 - 8806811
Alignment:
Q  278 aacaacttatgacttgtctataagttgcttttaacttatttccattagctctc 330  Q
    ||||||||||||| |||||||||| ||| ||||||||| ||| || |||||||    
T  8806759 aacaacttatgacatgtctataagctgcatttaacttacttctataagctctc 8806811  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 331
Target Start/End: Complemental strand, 12361266 - 12361218
Alignment:
Q  283 cttatgacttgtctataagttgcttttaacttatttccattagctctcc 331  Q
    |||||||| |||| ||||| || ||| ||||||||||||||||||||||    
T  12361266 cttatgacatgtccataagctgttttcaacttatttccattagctctcc 12361218  T

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