View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4978-Insertion-14 (Length: 419)

Name: NF4978-Insertion-14
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4978-Insertion-14
NF4978-Insertion-14
[»] chr3 (19 HSPs)
chr3 (8-419)||(40763238-40763661)
chr3 (151-260)||(36480736-36480847)
chr3 (151-216)||(3901568-3901633)
chr3 (152-227)||(11532499-11532574)
chr3 (159-255)||(29955045-29955143)
chr3 (159-255)||(30004199-30004297)
chr3 (154-262)||(32880999-32881109)
chr3 (158-255)||(36007389-36007488)
chr3 (185-260)||(14345180-14345257)
chr3 (154-199)||(799147-799192)
chr3 (151-227)||(1753315-1753391)
chr3 (161-213)||(37189222-37189274)
chr3 (152-206)||(40554123-40554177)
chr3 (185-255)||(19158692-19158763)
chr3 (152-216)||(3901499-3901563)
chr3 (151-215)||(16729172-16729236)
chr3 (151-227)||(19560628-19560704)
chr3 (151-199)||(36480706-36480754)
chr3 (151-272)||(51541262-51541385)
[»] chr2 (21 HSPs)
chr2 (151-260)||(3466416-3466527)
chr2 (152-255)||(16209375-16209480)
chr2 (151-255)||(42094237-42094342)
chr2 (152-272)||(42029342-42029464)
chr2 (152-260)||(44247538-44247648)
chr2 (155-227)||(18719734-18719806)
chr2 (151-260)||(25666827-25666938)
chr2 (152-260)||(2683405-2683515)
chr2 (185-260)||(4237279-4237356)
chr2 (151-200)||(9430228-9430277)
chr2 (152-196)||(23001430-23001474)
chr2 (152-212)||(42251242-42251302)
chr2 (152-260)||(42251163-42251273)
chr2 (185-260)||(1469768-1469845)
chr2 (156-198)||(8090937-8090979)
chr2 (154-212)||(33171678-33171736)
chr2 (151-201)||(42029432-42029482)
chr2 (150-227)||(1930668-1930745)
chr2 (151-199)||(1469738-1469786)
chr2 (151-215)||(12703471-12703535)
chr2 (151-199)||(12779742-12779790)
[»] chr8 (13 HSPs)
chr8 (150-262)||(40175921-40176035)
chr8 (151-260)||(2288598-2288709)
chr8 (151-223)||(40694681-40694753)
chr8 (151-213)||(17893316-17893378)
chr8 (151-200)||(20271104-20271153)
chr8 (151-200)||(21057732-21057781)
chr8 (151-272)||(42072661-42072782)
chr8 (151-198)||(35586496-35586543)
chr8 (162-260)||(24306275-24306374)
chr8 (151-200)||(36009913-36009962)
chr8 (154-227)||(38835002-38835075)
chr8 (151-227)||(34504441-34504517)
chr8 (151-199)||(36914889-36914937)
[»] chr4 (17 HSPs)
chr4 (151-255)||(2324757-2324863)
chr4 (151-260)||(33414002-33414113)
chr4 (151-260)||(21433902-21434013)
chr4 (155-260)||(31758690-31758797)
chr4 (151-260)||(15134566-15134677)
chr4 (151-207)||(2247579-2247635)
chr4 (152-252)||(16457920-16458022)
chr4 (151-201)||(21433872-21433922)
chr4 (151-200)||(7403174-7403223)
chr4 (163-212)||(41840671-41840720)
chr4 (174-226)||(993239-993291)
chr4 (151-199)||(993289-993337)
chr4 (151-199)||(7403090-7403138)
chr4 (151-223)||(42516513-42516585)
chr4 (151-260)||(52374916-52375027)
chr4 (152-227)||(3688570-3688645)
chr4 (155-199)||(9024002-9024046)
[»] chr1 (15 HSPs)
chr1 (166-260)||(23317923-23318019)
chr1 (152-260)||(34437598-34437707)
chr1 (152-260)||(731359-731468)
chr1 (155-212)||(40669008-40669065)
chr1 (150-199)||(49822620-49822669)
chr1 (151-199)||(34437689-34437737)
chr1 (151-260)||(38663650-38663761)
chr1 (152-199)||(38663743-38663790)
chr1 (173-260)||(2542731-2542820)
chr1 (174-212)||(23317988-23318026)
chr1 (166-260)||(23412779-23412875)
chr1 (161-198)||(31851952-31851989)
chr1 (151-255)||(7444280-7444386)
chr1 (151-195)||(38948188-38948232)
chr1 (151-272)||(49403471-49403594)
[»] chr7 (20 HSPs)
chr7 (155-260)||(26862942-26863049)
chr7 (151-255)||(316393-316499)
chr7 (151-260)||(49106935-49107045)
chr7 (151-249)||(47497740-47497840)
chr7 (151-260)||(12275767-12275878)
chr7 (151-199)||(2276276-2276324)
chr7 (151-227)||(10056687-10056763)
chr7 (155-260)||(24516559-24516666)
chr7 (152-227)||(11201293-11201368)
chr7 (155-237)||(2276329-2276413)
chr7 (151-227)||(5443594-5443669)
chr7 (151-211)||(31042138-31042198)
chr7 (185-272)||(40803177-40803265)
chr7 (167-260)||(45200465-45200560)
chr7 (155-227)||(46074119-46074191)
chr7 (151-198)||(5452667-5452714)
chr7 (151-201)||(3235558-3235608)
chr7 (151-201)||(26647690-26647740)
chr7 (151-227)||(40134450-40134524)
chr7 (155-260)||(18802843-18802950)
[»] chr6 (4 HSPs)
chr6 (152-260)||(24110092-24110196)
chr6 (155-226)||(1473618-1473689)
chr6 (155-212)||(34093891-34093948)
chr6 (152-199)||(1473687-1473735)
[»] chr5 (13 HSPs)
chr5 (155-260)||(25545247-25545354)
chr5 (171-254)||(22399805-22399890)
chr5 (155-260)||(3907683-3907792)
chr5 (171-255)||(41169409-41169495)
chr5 (151-227)||(32309661-32309737)
chr5 (151-260)||(42420016-42420127)
chr5 (156-199)||(13122043-13122086)
chr5 (184-255)||(36005053-36005126)
chr5 (174-212)||(40530052-40530090)
chr5 (174-227)||(3771230-3771283)
chr5 (151-212)||(41169469-41169530)
chr5 (151-199)||(17474865-17474913)
chr5 (171-260)||(27195281-27195372)
[»] scaffold0015 (1 HSPs)
scaffold0015 (151-214)||(201034-201097)
[»] scaffold0620 (1 HSPs)
scaffold0620 (155-212)||(9225-9282)
[»] scaffold0003 (1 HSPs)
scaffold0003 (151-260)||(136350-136461)


Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 8 - 419
Target Start/End: Complemental strand, 40763661 - 40763238
Alignment:
Q  8 acatatccatcaccaaaaacaccatcaaccaag---------gaattttgaatgtattcttcctaattcttcatgtattaagaatgaattttagagctat 98  Q
    ||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40763661 acatatccatcaccaaaaacaccatcaaccaactacatacatgaattttgaatgtattcttcctaattcttcatgtattaagaatgaattttagagctat 40763562  T
Q  99 acatgtaatatgacaatttactgaagnnnnnnnnn---tgtaatgtgataataaataacacacacttttcaacatactctctttaatttgttaaaattca 195  Q
    ||||||||||||| |||||||| ||             |||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||    
T  40763561 acatgtaatatgataatttactcaaaaaaaaaaaaaaatgtaatgtgataataaataacacac--ttttcaacatactctctttaatttattaaaattca 40763464  T
Q  196 catgagttccactaaatcatgcgggtcccata--aatttggtggatctcatatgaattttaagcaataataaatagtgtccttttaaatgtttattcata 293  Q
    | |||||||||| |||||||| || |||||||  |||||| |||||||||| |||||||||| |||||| ||||| ||||||||||||||||| ||||||    
T  40763463 cctgagttccaccaaatcatgtggatcccatataaatttgatggatctcatgtgaattttaaccaataaaaaataatgtccttttaaatgtttgttcata 40763364  T
Q  294 gcatttctctaattatatatgttacttagaaacaaaaaatattgtaaattctatgtattatatataaattatctatcaaataactaactctgttttatat 393  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40763363 gcatttctctacttatatatgttacttagaaacaaaaaatattgtaaattctatgtattatatataaattatctttcaaataactaactctgttttatat 40763264  T
Q  394 aaacaatcacataaaattttgtagca 419  Q
    ||||||||||||||||||||||||||    
T  40763263 aaacaatcacataaaattttgtagca 40763238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 36480847 - 36480736
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtccc--ataaatttggtggatctcatatga 248  Q
    |||||||||||||||||||| |||||||| ||| | ||||||||||||| || |||| |||||||| |||||||  ||||||||| ||| || ||| |||    
T  36480847 taacacacacttttcaacattctctctttgattggctaaaattcacatgggtcccaccaaatcatgtgggtcccatataaatttgttgggtcccatgtga 36480748  T
Q  249 attttaagcaat 260  Q
    ||||||| ||||    
T  36480747 attttaaccaat 36480736  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 3901633 - 3901568
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatg 216  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||||||||| || |||| ||||||||    
T  3901633 taacacacacttttcaacacactctctttgattggttaaaattcacatgggtcccaccaaatcatg 3901568  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 11532574 - 11532499
Alignment:
Q  152 aacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata 227  Q
    ||||||||||||  |||| ||||||||| ||| ||||||||||||||| ||||||| |||||||| || |||||||    
T  11532574 aacacacactttctaacacactctctttgattggttaaaattcacatgggttccaccaaatcatgtggatcccata 11532499  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 29955045 - 29955143
Alignment:
Q  159 acttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcc--cataaatttggtggatctcatatgaattttaa 255  Q
    ||||||||||| ||| | ||| ||| ||||||||||||||| || |||  |||||||| ||||||  |||||||||| |||||| ||||||||||||||    
T  29955045 acttttcaacacactttttttgattggttaaaattcacatgggtcccatcaaatcatgtgggtcccacataaatttgatggatcccatatgaattttaa 29955143  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 30004199 - 30004297
Alignment:
Q  159 acttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcc--cataaatttggtggatctcatatgaattttaa 255  Q
    ||||||||||| ||| | ||| ||| ||||||||||||||| || |||  |||||||| ||||||  |||||||||| |||||| ||||||||||||||    
T  30004199 acttttcaacacactttttttgattggttaaaattcacatgggtcccatcaaatcatgtgggtcccacataaatttgatggatcccatatgaattttaa 30004297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 262
Target Start/End: Original strand, 32880999 - 32881109
Alignment:
Q  154 cacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtccc--ataaatttggtggatctcatatgaatt 251  Q
    |||||| |||||||||||||||| || ||| ||||| ||||||||| || |||| |||||||| || ||||  ||||||||||||| |||| | | ||||    
T  32880999 cacacatttttcaacatactctccttgattggttaatattcacatgggtcccacaaaatcatgtggatcccatataaatttggtgggtctcgtgtaaatt 32881098  T
Q  252 ttaagcaataa 262  Q
    |||| ||||||    
T  32881099 ttaaccaataa 32881109  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 255
Target Start/End: Complemental strand, 36007488 - 36007389
Alignment:
Q  158 cacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata--aatttggtggatctcatatgaattttaa 255  Q
    |||||||||||| | | ||||| | | |||||||||||||||||  ||  ||||||||| ||| ||||||  ||||||||||||| ||||||||||||||    
T  36007488 cacttttcaacacattttctttgagtggttaaaattcacatgagcccccataaatcatgtgggccccatataaatttggtggatcccatatgaattttaa 36007389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 260
Target Start/End: Complemental strand, 14345257 - 14345180
Alignment:
Q  185 gttaaaattcacatgagttccactaaatcatgcgggtccc--ataaatttggtggatctcatatgaattttaagcaat 260  Q
    |||||||||||||||| | |||| |||||||| |||||||  ||||||||||||| |||||| || ||||||| ||||    
T  14345257 gttaaaattcacatgaatcccaccaaatcatgtgggtcccatataaatttggtgggtctcatgtggattttaaccaat 14345180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 799147 - 799192
Alignment:
Q  154 cacacacttttcaacatactctctttaatttgttaaaattcacatg 199  Q
    |||||||||||||||| ||||||||||||| ||| |||||||||||    
T  799147 cacacacttttcaacacactctctttaattagtttaaattcacatg 799192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 1753315 - 1753391
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata 227  Q
    ||||| ||||||||||| ||||||| ||| ||| ||||||||| ||||||||| ||  |||||||| || |||||||    
T  1753315 taacatacacttttcaatatactctttttgattggttaaaatttacatgagtttcatcaaatcatgtggttcccata 1753391  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 37189274 - 37189222
Alignment:
Q  161 ttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatc 213  Q
    |||| |||| ||||||||| ||| |||||||||||||||| ||||||||||||    
T  37189274 tttttaacagactctctttgattggttaaaattcacatgaattccactaaatc 37189222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 40554177 - 40554123
Alignment:
Q  152 aacacacacttttcaacatactctctttaatttgttaaaattcacatgagttcca 206  Q
    |||||||| ||||||| | ||||||||| ||| ||||||| ||||||||||||||    
T  40554177 aacacacaattttcaatacactctctttgattggttaaaactcacatgagttcca 40554123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 255
Target Start/End: Original strand, 19158692 - 19158763
Alignment:
Q  185 gttaaaattcacatgagttccactaaatcatgcggg--tcccataaatttggtggatctcatatgaattttaa 255  Q
    |||||||||||||||||| ||||||||| ||| |||  ||  ||||||||||||| | |||||||||||||||    
T  19158692 gttaaaattcacatgagtcccactaaattatgtgggtttcatataaatttggtgggt-tcatatgaattttaa 19158763  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 3901499 - 3901563
Alignment:
Q  152 aacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatg 216  Q
    |||||| | ||||||||| | ||||||| ||| ||||||||||||||| || |||| ||||||||    
T  3901499 aacacatatttttcaacacattctctttgattggttaaaattcacatgggtcccaccaaatcatg 3901563  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 16729172 - 16729236
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcat 215  Q
    |||||| |||| ||||||||||| | ||| ||| |||||||| ||||||||| |||| |||||||    
T  16729172 taacacgcactcttcaacatactttttttgattagttaaaatgcacatgagtcccaccaaatcat 16729236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 19560628 - 19560704
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata 227  Q
    |||| |||||||||||| | |||| |||| ||| ||| ||||||| ||| || |||| |||||||| ||||||||||    
T  19560628 taacgcacacttttcaatacactcgctttgattggttgaaattcatatgggtcccaccaaatcatgtgggtcccata 19560704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 36480706 - 36480754
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatg 199  Q
    |||||||| |||| ||||| ||||||||| ||| |||||||||||||||    
T  36480706 taacacaccctttccaacacactctctttgattggttaaaattcacatg 36480754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 272
Target Start/End: Complemental strand, 51541385 - 51541262
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccataaa--tttggtggatctcatatga 248  Q
    ||||||| | ||||||| | ||| | ||| ||| ||||||||||| |||||| |||| |||||||| |||||| ||| |  |||||||| || ||| |||    
T  51541385 taacacatatttttcaatacactttttttgattggttaaaattcagatgagtcccaccaaatcatgtgggtcctatatacttttggtgggtcacatgtga 51541286  T
Q  249 attttaagcaataataaatagtgt 272  Q
     |||||| |||| | |||||||||    
T  51541285 gttttaaccaatcaaaaatagtgt 51541262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 3466527 - 3466416
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata--aatttggtggatctcatatga 248  Q
    |||||||||||||  |||||| ||||||| ||| ||||||||||||||| ||||||||||||| || ||||||||||  |||||||||| |||||| |||    
T  3466527 taacacacactttcaaacatagtctctttgattggttaaaattcacatgggttccactaaatcgtgtgggtcccatatgaatttggtgggtctcatgtga 3466428  T
Q  249 attttaagcaat 260  Q
    ||||||| ||||    
T  3466427 attttaaccaat 3466416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 16209375 - 16209480
Alignment:
Q  152 aacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtccc--ataaatttggtggatctcatatgaa 249  Q
    |||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||| ||||  ||  ||||||  ||||||||||||| | |||| ||||    
T  16209375 aacacacactttccaacacactctctttaattggttaaaattcacatgagttccaccaaattttgtcggtcccatataaatttggtgggtttcatttgaa 16209474  T
Q  250 ttttaa 255  Q
    ||||||    
T  16209475 ttttaa 16209480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 151 - 255
Target Start/End: Complemental strand, 42094342 - 42094237
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtccc--ataaatttggtggatctcatatga 248  Q
    ||||||||||||||||||| || |||||| ||| ||||||||||||||| || |||| |||||||| |||||||  ||||||||||||| || ||| |||    
T  42094342 taacacacacttttcaacacacactctttgattggttaaaattcacatg-gtcccaccaaatcatgtgggtcccatataaatttggtgggtcccatgtga 42094244  T
Q  249 attttaa 255  Q
    |||||||    
T  42094243 attttaa 42094237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 152 - 272
Target Start/End: Original strand, 42029342 - 42029464
Alignment:
Q  152 aacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtccc--ataaatttggtggatctcatatgaa 249  Q
    |||||||| ||||||||| ||| | ||| ||||||||||||||| ||| || | || |||||||||||  |||  ||||||||||||| |||||| ||||    
T  42029342 aacacacatttttcaacacactgtatttgatttgttaaaattcatatgggtcctaccaaatcatgcggaccccatataaatttggtgggtctcatgtgaa 42029441  T
Q  250 ttttaagcaataataaatagtgt 272  Q
    |||||| |||||| ||| |||||    
T  42029442 ttttaaccaataaaaaaaagtgt 42029464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 152 - 260
Target Start/End: Original strand, 44247538 - 44247648
Alignment:
Q  152 aacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccat--aaatttggtggatctcatatgaa 249  Q
    |||||||| ||||||||| ||| ||||| ||| ||| ||||||||||| ||||||| |||| ||| |||||||||  ||||||| |||||| ||| ||||    
T  44247538 aacacacatttttcaacaaactatctttgattggttgaaattcacatgggttccaccaaattatgtgggtcccatacaaatttgatggatcccatgtgaa 44247637  T
Q  250 ttttaagcaat 260  Q
    |||||| ||||    
T  44247638 ttttaaccaat 44247648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 18719734 - 18719806
Alignment:
Q  155 acacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata 227  Q
    ||||| ||||||||| ||||| ||| ||| ||||||||||||| ||||||||| |||||||| ||||||||||    
T  18719734 acacatttttcaacacactctttttgattggttaaaattcacacgagttccaccaaatcatgtgggtcccata 18719806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 25666938 - 25666827
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata--aatttggtggatctcatatga 248  Q
    ||||| ||| ||||||||| ||||||||| || ||||||||| ||||||  | |||| ||||||||  ||| |||||  |||||||||| |||||| |||    
T  25666938 taacatacaattttcaacacactctctttgatgtgttaaaatccacatggatcccaccaaatcatgtaggttccatataaatttggtgggtctcatgtga 25666839  T
Q  249 attttaagcaat 260  Q
    ||||||| ||||    
T  25666838 attttaatcaat 25666827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 260
Target Start/End: Complemental strand, 2683515 - 2683405
Alignment:
Q  152 aacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcc--cataaatttggtggatctcatatgaa 249  Q
    |||||||||||||||  | ||||| ||| ||| ||||||||| | ||| ||||||| |||||||| ||||||   ||||||| ||||| || ||||||||    
T  2683515 aacacacacttttcacgacactctttttgattggttaaaatttatatgggttccaccaaatcatgtgggtccagtataaattcggtgggtcccatatgaa 2683416  T
Q  250 ttttaagcaat 260  Q
    |||||| ||||    
T  2683415 ttttaatcaat 2683405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 260
Target Start/End: Complemental strand, 4237356 - 4237279
Alignment:
Q  185 gttaaaattcacatgagttccactaaatcatgcgggtcccat--aaatttggtggatctcatatgaattttaagcaat 260  Q
    ||||||||||||||| || |||| |||||||| |||||||||  |||||||||||||| ||| | |||||||| ||||    
T  4237356 gttaaaattcacatgggtaccaccaaatcatgtgggtcccatacaaatttggtggatcccatgtaaattttaaccaat 4237279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 9430277 - 9430228
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatga 200  Q
    ||||||||||||||||||||| ||| ||| ||| ||||||||||||||||    
T  9430277 taacacacacttttcaacatattctatttgattggttaaaattcacatga 9430228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 23001430 - 23001474
Alignment:
Q  152 aacacacacttttcaacatactctctttaatttgttaaaattcac 196  Q
    |||||||| ||||||||||||||||||| ||| ||||||||||||    
T  23001430 aacacacatttttcaacatactctctttgattggttaaaattcac 23001474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 42251302 - 42251242
Alignment:
Q  152 aacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaat 212  Q
    |||||||||||||||||| ||||||||| |||  |||||||||||||| | ||||| ||||    
T  42251302 aacacacacttttcaacacactctctttgattgattaaaattcacatgggatccaccaaat 42251242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 260
Target Start/End: Original strand, 42251163 - 42251273
Alignment:
Q  152 aacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata--aatttggtggatctcatatgaa 249  Q
    |||||||| ||||| ||| ||||||||| ||  |||||||||| |||| || |||| |||| ||| ||| || |||  ||||||||||||| ||| ||||    
T  42251163 aacacacatttttcgacacactctctttgatcggttaaaattcgcatgggtcccaccaaattatgtgggacctatataaatttggtggatcccatgtgaa 42251262  T
Q  250 ttttaagcaat 260  Q
    |||||| ||||    
T  42251263 ttttaatcaat 42251273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 260
Target Start/End: Complemental strand, 1469845 - 1469768
Alignment:
Q  185 gttaaaattcacatgagttccactaaatcatgcgggtccc--ataaatttggtggatctcatatgaattttaagcaat 260  Q
    |||||||||||||||  | |||| |||||||| |||||||  |||||||||||||||  ||| |||||||||| ||||    
T  1469845 gttaaaattcacatggatcccacaaaatcatgtgggtcccatataaatttggtggattccatgtgaattttaaccaat 1469768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 8090979 - 8090937
Alignment:
Q  156 cacacttttcaacatactctctttaatttgttaaaattcacat 198  Q
    |||||||||||||| ||||  ||||||||||||||||||||||    
T  8090979 cacacttttcaacacactcaatttaatttgttaaaattcacat 8090937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 33171736 - 33171678
Alignment:
Q  154 cacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaat 212  Q
    |||||||||||||||| ||||||||| ||| |||||| |||||||| || |||| ||||    
T  33171736 cacacacttttcaacacactctctttgattggttaaatttcacatgggtcccaccaaat 33171678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 42029482 - 42029432
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgag 201  Q
    ||||||||||||||||||| ||| | ||| ||| |||||||||||||||||    
T  42029482 taacacacacttttcaacacacttttttttattggttaaaattcacatgag 42029432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 1930668 - 1930745
Alignment:
Q  150 ataacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata 227  Q
    |||||||||| ||||||| | ||||| ||| ||| ||||||||||||||  ||||||  |||| ||| ||||||||||    
T  1930668 ataacacacatttttcaagacactctttttgattggttaaaattcacatatgttccatcaaattatgtgggtcccata 1930745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 1469738 - 1469786
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatg 199  Q
    ||||||| | ||||||||| ||||| ||||||| |||||||||||||||    
T  1469738 taacacatatttttcaacacactctatttaattggttaaaattcacatg 1469786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 12703471 - 12703535
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcat 215  Q
    ||||||||| ||||||| | ||| ||||| ||| ||||| ||||||||||||||||  |||||||    
T  12703471 taacacacatttttcaatacactttctttgattggttaatattcacatgagttccatcaaatcat 12703535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 12779790 - 12779742
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatg 199  Q
    ||||||||||||  ||||| ||||| ||||||| |||||||||||||||    
T  12779790 taacacacacttaccaacacactctttttaattggttaaaattcacatg 12779742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 150 - 262
Target Start/End: Complemental strand, 40176035 - 40175921
Alignment:
Q  150 ataacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtccc--ataaatttggtggatctcatatg 247  Q
    ||||||||||||||| |||| ||||  ||||||| ||||||||||||||| || |||| |||| ||| |||||||  |||||||||||||||| ||| ||    
T  40176035 ataacacacactttttaacacactccttttaattggttaaaattcacatgggtcccaccaaattatgtgggtcccatataaatttggtggatcccatgtg 40175936  T
Q  248 aattttaagcaataa 262  Q
    |||||||| ||||||    
T  40175935 aattttaaccaataa 40175921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 260
Target Start/End: Original strand, 2288598 - 2288709
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtccc--ataaatttggtggatctcatatga 248  Q
    |||||||||||||  |||| ||||||||| ||| ||||||||| ||||| ||| ||| ||||||   |||||||  ||||||||| |||||| ||| |||    
T  2288598 taacacacactttcgaacacactctctttgattggttaaaatttacatgggtttcaccaaatcacatgggtcccatataaatttgatggatcccatgtga 2288697  T
Q  249 attttaagcaat 260  Q
    ||||||| ||||    
T  2288698 attttaaccaat 2288709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 40694753 - 40694681
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcc 223  Q
    ||||||||||||||||| | ||||| ||| ||| ||||||||||||||| || |||| |||||||| ||||||    
T  40694753 taacacacacttttcaatacactcttttttattagttaaaattcacatgggtcccaccaaatcatgtgggtcc 40694681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 17893316 - 17893378
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatc 213  Q
    ||||| ||| |||| |||| ||||||||| ||| ||||||| |||||||||||||||||||||    
T  17893316 taacatacattttttaacagactctctttgattagttaaaactcacatgagttccactaaatc 17893378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 20271153 - 20271104
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatga 200  Q
    |||||| |||||||||||| ||||||||| ||| ||||||||||||||||    
T  20271153 taacacgcacttttcaacacactctctttgattagttaaaattcacatga 20271104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 21057781 - 21057732
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatga 200  Q
    |||||| |||||||||||| ||||||||| ||| ||||||||||||||||    
T  21057781 taacacgcacttttcaacacactctctttgattagttaaaattcacatga 21057732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 272
Target Start/End: Original strand, 42072661 - 42072782
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata--aatttggtggatctcatatga 248  Q
    ||||||||||||  ||||| ||||||||| ||| ||||| ||||||||| || |||| |||||||  ||||| ||||  |||||||||| || ||| | |    
T  42072661 taacacacactt--caacacactctctttgattggttaacattcacatgggtcccaccaaatcatatgggtctcatataaatttggtgggtcccatgtaa 42072758  T
Q  249 attttaagcaataataaatagtgt 272  Q
    ||||||| |||||| ||| |||||    
T  42072759 attttaaccaataaaaaagagtgt 42072782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 35586543 - 35586496
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacat 198  Q
    ||||||||||||||||||| | |||||||||||  |||||||||||||    
T  35586543 taacacacacttttcaacacattctctttaattgattaaaattcacat 35586496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 260
Target Start/End: Original strand, 24306275 - 24306374
Alignment:
Q  162 tttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata--aatttggtggatctcatatgaattttaagcaa 259  Q
    |||||||| ||||||||| ||| ||| |||||||  |  ||||||| |||||||| ||||||||||  ||| | ||||||||||||| |||||||| |||    
T  24306275 tttcaacacactctcttttattggttgaaattcatctcggttccaccaaatcatg-gggtcccatattaatgttgtggatctcatataaattttaaccaa 24306373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 36009962 - 36009913
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatga 200  Q
    ||||||||||||| ||||| |||||||||  || ||||||||||||||||    
T  36009962 taacacacactttccaacacactctctttggttggttaaaattcacatga 36009913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 38835002 - 38835075
Alignment:
Q  154 cacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata 227  Q
    ||||||| |||||||| | ||||||| |||   ||||||||||||| ||  ||| |||||||||||||||||||    
T  38835002 cacacacatttcaacacattctctttgattgactaaaattcacatgggtctcaccaaatcatgcgggtcccata 38835075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 34504517 - 34504441
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata 227  Q
    ||||| ||||||||||||| ||| | ||| ||| |||||||||| |||| ||  ||| |||||||| ||||||||||    
T  34504517 taacatacacttttcaacacactttttttgattggttaaaattcgcatgggtcacaccaaatcatgtgggtcccata 34504441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 36914889 - 36914937
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatg 199  Q
    ||||||||| ||||||||||| | |||||||||  ||||||||||||||    
T  36914889 taacacacatttttcaacatattatctttaattgattaaaattcacatg 36914937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 151 - 255
Target Start/End: Original strand, 2324757 - 2324863
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtccc--ataaatttggtggatctcatatga 248  Q
    |||| |||||||||||| ||||||||||| ||| ||||||||||||||||||| ||| |||||||| |||||||  ||||||||||||| || ||| | |    
T  2324757 taacgcacacttttcaatatactctctttgattggttaaaattcacatgagtttcaccaaatcatgtgggtcccatataaatttggtgggtcccatgtaa 2324856  T
Q  249 attttaa 255  Q
    |||||||    
T  2324857 attttaa 2324863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 151 - 260
Target Start/End: Original strand, 33414002 - 33414113
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcc--cataaatttggtggatctcatatga 248  Q
    ||||||||||||||||||| ||||||||| ||| |||||||||||||||  | |||| |||||| | ||||||   ||||||||||||| || |||||||    
T  33414002 taacacacacttttcaacacactctctttgattggttaaaattcacatggatcccaccaaatcacgtgggtcctatataaatttggtgggtcccatatga 33414101  T
Q  249 attttaagcaat 260  Q
    ||||||| ||||    
T  33414102 attttaatcaat 33414113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 21434013 - 21433902
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtccc--ataaatttggtggatctcatatga 248  Q
    ||||| ||||||||||||| |||||| || ||| |||||||||||||||  | |||| |||||||| ||||| |  ||||||||||||| |||||| |||    
T  21434013 taacatacacttttcaacacactctcattgattggttaaaattcacatggatcccaccaaatcatgtgggtctcatataaatttggtgggtctcatgtga 21433914  T
Q  249 attttaagcaat 260  Q
    ||||||| ||||    
T  21433913 attttaaccaat 21433902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 155 - 260
Target Start/End: Original strand, 31758690 - 31758797
Alignment:
Q  155 acacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtccca--taaatttggtggatctcatatgaattt 252  Q
    ||||||||||||||| | ||| ||| ||| |||||||||||||| || ||||| |||||||| ||||| ||  |||||||||||| ||||||| ||||||    
T  31758690 acacacttttcaacacattctatttgattggttaaaattcacataagctccaccaaatcatgtgggtctcatgtaaatttggtgggtctcataagaattt 31758789  T
Q  253 taagcaat 260  Q
    ||| ||||    
T  31758790 taatcaat 31758797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 151 - 260
Target Start/End: Original strand, 15134566 - 15134677
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtccc--ataaatttggtggatctcatatga 248  Q
    ||||||||| ||||||||| | ||||||| ||| ||||||||||||||| || | ||||||||||  |||||||  ||||||||||||  || ||| |||    
T  15134566 taacacacatttttcaacacattctcttttattggttaaaattcacatgggtccgactaaatcatttgggtcccatataaatttggtgagtcccatgtga 15134665  T
Q  249 attttaagcaat 260  Q
    ||||||| ||||    
T  15134666 attttaaccaat 15134677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 2247579 - 2247635
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccac 207  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||| ||| |||||    
T  2247579 taacacacacttttcaacacactctctttaattgattaaaattcacacgagatccac 2247635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 252
Target Start/End: Original strand, 16457920 - 16458022
Alignment:
Q  152 aacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtccc--ataaatttggtggatctcatatgaa 249  Q
    |||||||| |||  |||| ||||||||| ||| |||||||||||||||  | |||  |||||||| |||||||  ||||||||||||| ||||| |||||    
T  16457920 aacacacattttctaacacactctctttgattggttaaaattcacatggatcccatcaaatcatgtgggtcccatataaatttggtgggtctcacatgaa 16458019  T
Q  250 ttt 252  Q
    |||    
T  16458020 ttt 16458022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 21433872 - 21433922
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgag 201  Q
    ||||||||| ||||||||| ||||||||| ||| |||||||||||||||||    
T  21433872 taacacacatttttcaacacactctctttgattggttaaaattcacatgag 21433922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 7403223 - 7403174
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatga 200  Q
    ||||||||||| ||||||| ||||||||| ||| ||||||||||||||||    
T  7403223 taacacacactattcaacacactctctttgattggttaaaattcacatga 7403174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 41840720 - 41840671
Alignment:
Q  163 ttcaacatactctctttaatttgttaaaattcacatgagttccactaaat 212  Q
    ||||||| ||||| ||| ||| ||||||||||||||||||||||||||||    
T  41840720 ttcaacacactctatttgattggttaaaattcacatgagttccactaaat 41840671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 993239 - 993291
Alignment:
Q  174 ctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccat 226  Q
    |||||| ||| |||||||||||||||||| |||| |||||||| |||||||||    
T  993239 ctctttgattggttaaaattcacatgagtcccaccaaatcatgtgggtcccat 993291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 993337 - 993289
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatg 199  Q
    ||||||||||||| ||||| ||||||||| |||||||| ||||||||||    
T  993337 taacacacactttccaacaaactctctttgatttgttagaattcacatg 993289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 7403090 - 7403138
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatg 199  Q
    |||||||||||||| | |||||||||||||||| ||||||| |||||||    
T  7403090 taacacacactttttatcatactctctttaattggttaaaactcacatg 7403138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 42516585 - 42516513
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcc 223  Q
    ||||||||||||||||||| | |||||||| || ||| |||||||||| |||  ||||||| |||| ||||||    
T  42516585 taacacacacttttcaacacattctctttatttggtttaaattcacataagtcacactaaaccatgtgggtcc 42516513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 260
Target Start/End: Original strand, 52374916 - 52375027
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtccc--ataaatttggtggatctcatatga 248  Q
    ||||||||||||||||||| ||||||||| ||   ||||||||||||||  |  ||| |||| ||| |||||||  ||||||||| ||||||  || |||    
T  52374916 taacacacacttttcaacacactctctttgatagattaaaattcacatggatctcaccaaattatgtgggtcccgtataaatttgatggatcaaatgtga 52375015  T
Q  249 attttaagcaat 260  Q
    ||||||| ||||    
T  52375016 attttaaccaat 52375027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 3688570 - 3688645
Alignment:
Q  152 aacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata 227  Q
    |||||||| ||||||||| | | ||||| ||| ||||||||||||||| ||  ||| |||||||| ||||||||||    
T  3688570 aacacacatttttcaacacattttctttgattagttaaaattcacatgggtctcaccaaatcatgtgggtcccata 3688645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 9024046 - 9024002
Alignment:
Q  155 acacacttttcaacatactctctttaatttgttaaaattcacatg 199  Q
    ||||||||||||||| | ||||||| ||||||||||||| |||||    
T  9024046 acacacttttcaacacattctctttgatttgttaaaatttacatg 9024002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 166 - 260
Target Start/End: Original strand, 23317923 - 23318019
Alignment:
Q  166 aacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtccc--ataaatttggtggatctcatatgaattttaagcaat 260  Q
    |||| |||| |||||||||||||||||||||||  || |||| |||||||| |||||||  |||||||| ||||||||||| |||||||||| ||||    
T  23317923 aacacactccctttaatttgttaaaattcacataggtcccaccaaatcatgtgggtcccatataaatttagtggatctcatgtgaattttaaccaat 23318019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 260
Target Start/End: Original strand, 34437598 - 34437707
Alignment:
Q  152 aacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata-aatttggtggatctcatatgaat 250  Q
    |||||||| ||||||||| ||||||||| ||| ||||||||||||||| || |||| |||||||| ||| |||||| ||||||| ||  | ||| |||||    
T  34437598 aacacacatttttcaacaaactctctttgattggttaaaattcacatgggtcccaccaaatcatgtgggacccatataatttggggggacccatgtgaat 34437697  T
Q  251 tttaagcaat 260  Q
    ||||| ||||    
T  34437698 tttaaccaat 34437707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 260
Target Start/End: Complemental strand, 731468 - 731359
Alignment:
Q  152 aacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata--aatttggtggatctcatatgaa 249  Q
    |||||||| ||||||||| | ||| ||| ||| ||||||||| ||||||||  ||| |||||||| ||||||||||  ||||||||| ||||||| ||||    
T  731468 aacacaca-ttttcaacaaagtcttttttattggttaaaatttacatgagtcgcaccaaatcatgtgggtcccatataaatttggtgaatctcatgtgaa 731370  T
Q  250 ttttaagcaat 260  Q
    |||||| ||||    
T  731369 ttttaatcaat 731359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 40669065 - 40669008
Alignment:
Q  155 acacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaat 212  Q
    ||||||||||||||| ||||||||| ||| ||||||||||||| | ||||||| ||||    
T  40669065 acacacttttcaacacactctctttgattggttaaaattcacacgggttccaccaaat 40669008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 49822669 - 49822620
Alignment:
Q  150 ataacacacacttttcaacatactctctttaatttgttaaaattcacatg 199  Q
    |||||||||| ||||||||| ||||||||| ||| |||||||||||||||    
T  49822669 ataacacacatttttcaacacactctctttgattggttaaaattcacatg 49822620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 34437737 - 34437689
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatg 199  Q
    |||||| |||||||||||| ||||||||| ||| |||||||||||||||    
T  34437737 taacacgcacttttcaacacactctctttgattggttaaaattcacatg 34437689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 260
Target Start/End: Original strand, 38663650 - 38663761
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata--aatttggtggatctcatatga 248  Q
    ||||||| | ||||||||| ||||||||| ||| |||| |||||||||  || |||| |||||||  |||||| |||  |||||||||| || ||| |||    
T  38663650 taacacatatttttcaacacactctctttgattggttacaattcacataggtcccaccaaatcatatgggtcctatataaatttggtgggtcccatgtga 38663749  T
Q  249 attttaagcaat 260  Q
    ||||||| ||||    
T  38663750 attttaaccaat 38663761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 38663790 - 38663743
Alignment:
Q  152 aacacacacttttcaacatactctctttaatttgttaaaattcacatg 199  Q
    ||||| || ||||||||||||||| ||||||| |||||||||||||||    
T  38663790 aacacgcatttttcaacatactctttttaattggttaaaattcacatg 38663743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 260
Target Start/End: Complemental strand, 2542820 - 2542731
Alignment:
Q  173 tctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtccc--ataaatttggtggatctcatatgaattttaagcaat 260  Q
    ||||||| ||| |||||||||||||||  |||||| |||||||| |||| ||  |||||||||||||  ||||| | |||||||| ||||    
T  2542820 tctctttgattggttaaaattcacatggcttccaccaaatcatgtgggttccatataaatttggtgggcctcatgtaaattttaaccaat 2542731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 23318026 - 23317988
Alignment:
Q  174 ctctttaatttgttaaaattcacatgagttccactaaat 212  Q
    |||||||||| ||||||||||||||||| ||||||||||    
T  23318026 ctctttaattggttaaaattcacatgagatccactaaat 23317988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 260
Target Start/End: Original strand, 23412779 - 23412875
Alignment:
Q  166 aacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata--aatttggtggatctcatatgaattttaagcaat 260  Q
    |||||||| ||||| ||| |||| |||||||||  ||||||| ||||||| ||||||  |||  ||||||||| |||||| || |||||||| ||||    
T  23412779 aacatactttctttgattagttataattcacataggttccaccaaatcatacgggtcatatataaatttggtgaatctcaaataaattttaatcaat 23412875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 31851989 - 31851952
Alignment:
Q  161 ttttcaacatactctctttaatttgttaaaattcacat 198  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  31851989 ttttcaacacactctctttgatttgttaaaattcacat 31851952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 255
Target Start/End: Original strand, 7444280 - 7444386
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagtt-ccactaaatcatgcgggtccc--ataaatttggtggatctcatatg 247  Q
    ||||||||| ||||||||| | | ||||||||  ||||||||||| | ||||| |||| |||||||| |||||||  ||||||||||| | || ||| ||    
T  7444280 taacacacatttttcaacacattttctttaatcggttaaaattca-aagagttcccaccaaatcatgtgggtcccatataaatttggtaggtcccatgtg 7444378  T
Q  248 aattttaa 255  Q
    ||||||||    
T  7444379 aattttaa 7444386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 38948232 - 38948188
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattca 195  Q
    |||||||||||||| |||| ||||||||| |||||||| ||||||    
T  38948232 taacacacactttttaacacactctctttgatttgttagaattca 38948188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 272
Target Start/End: Original strand, 49403471 - 49403594
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata--aatttggtggatctcatatga 248  Q
    ||||||||| |||| |||||| | | | | ||| |||||||||||||| ||| |||  |||| ||| |||| |||||  |||||||||| |||||| |||    
T  49403471 taacacacattttttaacatattttttatgattggttaaaattcacataagtcccatcaaattatgtgggttccatataaatttggtgggtctcatgtga 49403570  T
Q  249 attttaagcaataataaatagtgt 272  Q
    |||||||  ||||| ||| |||||    
T  49403571 attttaacaaataaaaaaaagtgt 49403594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 155 - 260
Target Start/End: Complemental strand, 26863049 - 26862942
Alignment:
Q  155 acacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcc--cataaatttggtggatctcatatgaattt 252  Q
    |||||||||||| || ||||||||||||| ||||||||||||||| || |||| |||||||| ||||||   |||||| ||||| ||| ||| |||||||    
T  26863049 acacacttttcatcaaactctctttaattggttaaaattcacatgggtcccaccaaatcatgtgggtcctatataaatatggtgaatcccatgtgaattt 26862950  T
Q  253 taagcaat 260  Q
    ||| ||||    
T  26862949 taaccaat 26862942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 151 - 255
Target Start/End: Complemental strand, 316499 - 316393
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccat--aaatttggtggatctcatatga 248  Q
    ||||||||| ||||||||| | ||||||| ||| | ||||||  |||||||||||||||||||| | ||||| |||  |||||||||||| ||||| |||    
T  316499 taacacacatttttcaacacattctctttgattggataaaatctacatgagttccactaaatcaagtgggtctcatacaaatttggtggaactcatgtga 316400  T
Q  249 attttaa 255  Q
    |||||||    
T  316399 attttaa 316393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 49107045 - 49106935
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcc-cataaatttggtggatctcatatgaa 249  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||||||||  || |||| |||||||||||| ||  ||||||||||| |  | ||| ||||    
T  49107045 taacacacacttttcaacacactctctttgattggttaaaattcacataggtcccaccaaatcatgcgggaccatataaatttggtaggacccatgtgaa 49106946  T
Q  250 ttttaagcaat 260  Q
    |||||| ||||    
T  49106945 ttttaatcaat 49106935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 249
Target Start/End: Complemental strand, 47497840 - 47497740
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccat--aaatttggtggatctcatatga 248  Q
    ||||||||| ||||||| ||| | ||||| ||| |||||||||||||||||| |||| |||| ||| |||||||||  ||||||||||| |||||| |||    
T  47497840 taacacacatttttcaatatattttctttgattggttaaaattcacatgagtcccaccaaattatgtgggtcccatacaaatttggtgggtctcatttga 47497741  T
Q  249 a 249  Q
    |    
T  47497740 a 47497740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 12275878 - 12275767
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtccc--ataaatttggtggatctcatatga 248  Q
    ||||||||||||| ||||| ||||||||  ||| ||||||||||| ||| || |||| |||||||| |||||||  ||||||||||||| || ||| |||    
T  12275878 taacacacactttccaacacactctcttcgattggttaaaattcatatgggtcccaccaaatcatgtgggtcccatataaatttggtgggtcccatgtga 12275779  T
Q  249 attttaagcaat 260  Q
     |||||| ||||    
T  12275778 tttttaaccaat 12275767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 2276276 - 2276324
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatg 199  Q
    ||||||||||||||||||| ||||||||| ||| |||||||||||||||    
T  2276276 taacacacacttttcaacacactctctttgattggttaaaattcacatg 2276324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 10056763 - 10056687
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata 227  Q
    |||||| |||||||||||| ||||||||||||| |||||||| || ||| || || | |||||||| ||||||||||    
T  10056763 taacacgcacttttcaacacactctctttaattagttaaaatccatatgggtccctccaaatcatgtgggtcccata 10056687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 260
Target Start/End: Original strand, 24516559 - 24516666
Alignment:
Q  155 acacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtccca--taaatttggtggatctcatatgaattt 252  Q
    |||| |||| ||||||||| ||||| ||| ||||||||||||||| || |||| |||||||| || | |||  ||||||| ||||||| ||| |||||||    
T  24516559 acactctttccaacatactttctttgattggttaaaattcacatgggtcccaccaaatcatgtggattccatctaaatttagtggatcccatgtgaattt 24516658  T
Q  253 taagcaat 260  Q
    ||| ||||    
T  24516659 taatcaat 24516666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 11201293 - 11201368
Alignment:
Q  152 aacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata 227  Q
    |||||||||||| ||||| ||||||||| ||| ||||||||||||||| || |||| |||||| | ||||| ||||    
T  11201293 aacacacactttccaacacactctctttcattagttaaaattcacatgggtcccaccaaatcacgtgggtctcata 11201368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 2276413 - 2276329
Alignment:
Q  155 acacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtccc--ataaatttggtgg 237  Q
    |||||| ||| |||| ||| ||||||||| |||||||||||||||| | |||| |||| ||| |||||||  |||||||||||||    
T  2276413 acacacattttaacacactatctttaattggttaaaattcacatgaatcccaccaaattatgtgggtcccttataaatttggtgg 2276329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 5443669 - 5443594
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata 227  Q
    ||||||||| ||||||||||||| ||||| ||| |||||||||||||| || ||||| |||| ||| || |||||||    
T  5443669 taacacacatttttcaacatactttctttgattggttaaaattcacat-agctccaccaaattatgtggatcccata 5443594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 31042138 - 31042198
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaa 211  Q
    ||||||||||||||||| | | | ||||| ||| ||||||||||||| |||||||||||||    
T  31042138 taacacacacttttcaatacattatctttgattggttaaaattcacacgagttccactaaa 31042198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 272
Target Start/End: Original strand, 40803177 - 40803265
Alignment:
Q  185 gttaaaattcacatgagttccactaaatcatgcgggtccc-ataaatttggtggatctcatatgaattttaagcaataataaatagtgt 272  Q
    ||||||||| | ||||| ||||| ||||||||| | |||  |||| ||||||||||| ||| |||||||||| |||||| |||||||||    
T  40803177 gttaaaatttatatgagatccaccaaatcatgcagatccatataagtttggtggatcccatgtgaattttaaccaataaaaaatagtgt 40803265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 260
Target Start/End: Original strand, 45200465 - 45200560
Alignment:
Q  167 acatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata--aatttggtggatctcatatgaattttaagcaat 260  Q
    |||| |||||||| |||| |||||||| | ||| ||||||| |||||||| || || ||||  ||||||||||| |||| ||||||||||| ||||    
T  45200465 acattctctctttgatttattaaaatttatatgggttccaccaaatcatgtggatctcatataaatttggtggacctcaaatgaattttaatcaat 45200560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 46074191 - 46074119
Alignment:
Q  155 acacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata 227  Q
    |||||| ||| |||| ||||||||||||| |||||||||||||||||| |||  |||||| | || |||||||    
T  46074191 acacacattttaacacactctctttaattggttaaaattcacatgagtcccatcaaatcacgtggatcccata 46074119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 5452714 - 5452667
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacat 198  Q
    ||||||||| ||||||||||||| ||||| ||| ||||||||||||||    
T  5452714 taacacacatttttcaacatactttctttgattggttaaaattcacat 5452667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 3235558 - 3235608
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgag 201  Q
    ||||||||||||| ||| | ||||||||| ||| |||||||||||||||||    
T  3235558 taacacacactttccaatacactctctttgattggttaaaattcacatgag 3235608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 26647690 - 26647740
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgag 201  Q
    ||||||||| ||||||||||| ||| ||| ||| |||||||||||||||||    
T  26647690 taacacacatttttcaacatagtctttttcattggttaaaattcacatgag 26647740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 40134524 - 40134450
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata 227  Q
    ||||||||||||| ||||| |||||||   ||| ||||||||||||||| || |||| |||| ||| ||||||||||    
T  40134524 taacacacactttccaacacactctctg--attggttaaaattcacatgggtcccaccaaattatgtgggtcccata 40134450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 260
Target Start/End: Original strand, 18802843 - 18802950
Alignment:
Q  155 acacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtccc--ataaatttggtggatctcatatgaattt 252  Q
    ||||| ||||||| |||||||  || ||||||||||||||||||  || |||| |||| |||  ||| ||  |||||||| | ||||| |||||||||||    
T  18802843 acacatttttcaatatactctagttgatttgttaaaattcacataggtcccaccaaataatgttggttccatataaatttcgcggatcccatatgaattt 18802942  T
Q  253 taagcaat 260  Q
    ||| ||||    
T  18802943 taaccaat 18802950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 152 - 260
Target Start/End: Complemental strand, 24110196 - 24110092
Alignment:
Q  152 aacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccataaatttggtggatctcatatgaatt 251  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||| ||  | | ||| ||||   ||||  ||||||||||||||| ||||||||||    
T  24110196 aacacacacttttcaatatactctctttaattggttaaaattcacatgggt--ctccaaaccatgtatgtcc--taaatttggtggatcacatatgaatt 24110101  T
Q  252 ttaagcaat 260  Q
    |||| ||||    
T  24110100 ttaaccaat 24110092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 1473618 - 1473689
Alignment:
Q  155 acacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccat 226  Q
    ||||| ||||||||| ||| ||||| ||| ||||||||||||||| ||||||| |||||||| |||||||||    
T  1473618 acacatttttcaacacactatctttgattggttaaaattcacatgggttccaccaaatcatgtgggtcccat 1473689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 34093948 - 34093891
Alignment:
Q  155 acacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaat 212  Q
    ||||||||||||||||| ||||||| ||| ||||||||||||||| | ||||||||||    
T  34093948 acacacttttcaacataatctctttgattggttaaaattcacatgggatccactaaat 34093891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 1473735 - 1473687
Alignment:
Q  152 aacacacacttttcaacatactctctttaatt-tgttaaaattcacatg 199  Q
    |||||||||||||||||||||||||||| ||| | | ||||||||||||    
T  1473735 aacacacacttttcaacatactctctttgattgtttaaaaattcacatg 1473687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 155 - 260
Target Start/End: Complemental strand, 25545354 - 25545247
Alignment:
Q  155 acacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtccc--ataaatttggtggatctcatatgaattt 252  Q
    |||||| ||| |||| ||||||||| ||| |||||||||||| ||||| |||| ||||||||  ||||||  |||||||| |||| |||||| |||||||    
T  25545354 acacacattttaacacactctctttgattggttaaaattcacgtgagtcccaccaaatcatgtcggtcccatataaatttagtgggtctcatgtgaattt 25545255  T
Q  253 taagcaat 260  Q
    ||| ||||    
T  25545254 taaccaat 25545247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 22399890 - 22399805
Alignment:
Q  171 actctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata--aatttggtggatctcatatgaatttta 254  Q
    ||||||||| ||| |||||||||||||||||| | ||||||||||  ||||| ||||  |||||||||| |||||| |||||||||    
T  22399890 actctctttgattggttaaaattcacatgagtcctactaaatcatctgggtctcatatgaatttggtgggtctcatgtgaatttta 22399805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 260
Target Start/End: Complemental strand, 3907792 - 3907683
Alignment:
Q  155 acacactttt--caacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtccc--ataaatttggtggatctcatatgaat 250  Q
    ||||||||||  ||||| | ||| ||| ||| ||||||||||||||| || |||| |||||||| |||||||  ||||||||||||| || ||| |||||    
T  3907792 acacactttttccaacacattctttttgattggttaaaattcacatgggtcccaccaaatcatgtgggtcccatataaatttggtgggtcccatgtgaat 3907693  T
Q  251 tttaagcaat 260  Q
    ||||| ||||    
T  3907692 tttaaccaat 3907683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 41169409 - 41169495
Alignment:
Q  171 actctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtccc--ataaatttggtggatctcatatgaattttaa 255  Q
    ||||| ||| ||| ||| |||||||||||  |||||| |||||||||| |||||  |||||||||||||||| ||| ||||||||||    
T  41169409 actctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtggatcacatgtgaattttaa 41169495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 32309737 - 32309661
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata 227  Q
    ||||||||||||||||||  | ||||||| ||||||||||||| |||| | | |||| |||||||| | ||||||||    
T  32309737 taacacacacttttcaacgcattctctttgatttgttaaaatttacattaatcccaccaaatcatgtgagtcccata 32309661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 260
Target Start/End: Original strand, 42420016 - 42420127
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtccc--ataaatttggtggatctcatatga 248  Q
    ||||||||| ||||||||| | ||||||||||| |||||||   || || || |||| |||||||| || ||||  ||||||||| |||||||||| |||    
T  42420016 taacacacatttttcaacacattctctttaattggttaaaacatacgtgggtcccaccaaatcatgtggatcccatataaatttgatggatctcatgtga 42420115  T
Q  249 attttaagcaat 260  Q
     |||||| ||||    
T  42420116 gttttaaccaat 42420127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 13122043 - 13122086
Alignment:
Q  156 cacacttttcaacatactctctttaatttgttaaaattcacatg 199  Q
    |||||||||||||||||||||||| ||| | |||||||||||||    
T  13122043 cacacttttcaacatactctctttgattgggtaaaattcacatg 13122086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 36005126 - 36005053
Alignment:
Q  184 tgttaaaattcacatgagttccactaaatcatgcgggtcccata--aatttggtggatctcatatgaattttaa 255  Q
    |||||||||||||||| ||  |||| ||||| | || |||||||  ||||||||||||| ||||||||||||||    
T  36005126 tgttaaaattcacatgggtctcactgaatcacgtggatcccatataaatttggtggatcccatatgaattttaa 36005053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 40530090 - 40530052
Alignment:
Q  174 ctctttaatttgttaaaattcacatgagttccactaaat 212  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  40530090 ctctttaatttgttaaaattcacaggagatccactaaat 40530052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 3771283 - 3771230
Alignment:
Q  174 ctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata 227  Q
    |||||| ||| ||||||||||||||  ||||||| |||||||||||| ||||||    
T  3771283 ctctttgattggttaaaattcacattggttccaccaaatcatgcgggacccata 3771230  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 41169530 - 41169469
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaat 212  Q
    ||||||||| ||||||||| ||||||||| ||  ||||||||||||||| | ||||| ||||    
T  41169530 taacacacatttttcaacacactctctttgatccgttaaaattcacatgtgatccaccaaat 41169469  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 17474913 - 17474865
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatg 199  Q
    ||||||||||||||||||| || |||||| |||  ||||||||||||||    
T  17474913 taacacacacttttcaacacacactctttgattgattaaaattcacatg 17474865  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 260
Target Start/End: Complemental strand, 27195372 - 27195281
Alignment:
Q  171 actctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtccc--ataaatttggtggatctcatatgaattttaagcaat 260  Q
    ||||||||| |||  ||||||||||||||||| |||| ||||||||  || |||  ||||||||||||||   ||| |||||||||| ||||    
T  27195372 actctctttgattgattaaaattcacatgagtcccacaaaatcatgtcggacccatataaatttggtggaatccatgtgaattttaatcaat 27195281  T

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Target: scaffold0015 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 201097 - 201034
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatca 214  Q
    |||||||||||| |||||| ||||||||| ||||||||| ||||||||| || |||||||||||    
T  201097 taacacacacttatcaacacactctctttgatttgttaagattcacatgtgtcccactaaatca 201034  T

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Target: scaffold0620 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 9282 - 9225
Alignment:
Q  155 acacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaat 212  Q
    ||||||||||||||||| ||||||| ||| ||||||||||||||| | ||||||||||    
T  9282 acacacttttcaacataatctctttgattggttaaaattcacatgggatccactaaat 9225  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 136461 - 136350
Alignment:
Q  151 taacacacacttttcaacatactctctttaatttgttaaaattcacatgagttccactaaatcatgcgggtcccata--aatttggtggatctcatatga 248  Q
    ||||||||| ||||||||| ||||| ||| ||| ||||||| ||||||| || |||  |||||||| | | ||||||  |||||| |||  |||||||||    
T  136461 taacacacatttttcaacacactctttttgattggttaaaactcacatgtgtcccatcaaatcatgtgtgacccatataaatttgatgggactcatatga 136362  T
Q  249 attttaagcaat 260  Q
    ||||||| ||||    
T  136361 attttaaccaat 136350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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