View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4978-Insertion-15 (Length: 129)
Name: NF4978-Insertion-15
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978-Insertion-15 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 86; Significance: 2e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 40080575 - 40080699
Alignment:
| Q |
8 |
gcaataactatcagaaatactacttgttcaaatnnnnnnn---catcagaaatgctatatgaactaatcccatacaaggtgtaaactatatacaagtcaa |
104 |
Q |
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| T |
40080575 |
gcaataactattagaaatactacttgttcaaataaaaaaaaaacatcagaaatgctatatgaactaatcccatacaaggtgtaaactatatacaagtcaa |
40080674 |
T |
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| Q |
105 |
gctcataacacagttcacacctcac |
129 |
Q |
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| T |
40080675 |
gctcataacacagttcacacctcac |
40080699 |
T |
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Target: chr4; HSP #2
Raw Score: 58; E-Value: 8e-25
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 40079003 - 40079093
Alignment:
| Q |
11 |
ataactatcagaaatactacttgttcaaatnnnnnnn-catcagaaatgctatatgaactaatcccatacaaggtgtaaactatatacaag |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40079003 |
ataactatcagaaatactacttgttcaaataaaaaaaacatcagaaatgctatatgaactaattccatacaaggtgtaaactatatacaag |
40079093 |
T |
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