View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4978-Insertion-2 (Length: 967)

Name: NF4978-Insertion-2
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4978-Insertion-2
NF4978-Insertion-2
[»] chr7 (10 HSPs)
chr7 (121-602)||(2670600-2671086)
chr7 (727-966)||(2669634-2669879)
chr7 (718-784)||(6056029-6056095)
chr7 (120-185)||(3486910-3486975)
chr7 (646-759)||(24459528-24459641)
chr7 (397-450)||(34877235-34877288)
chr7 (103-166)||(12575342-12575408)
chr7 (129-180)||(3221370-3221421)
chr7 (124-185)||(18045976-18046037)
chr7 (103-163)||(34876945-34877008)
[»] chr2 (6 HSPs)
chr2 (120-186)||(29145224-29145290)
chr2 (332-385)||(32121630-32121683)
chr2 (339-384)||(43924793-43924838)
chr2 (707-762)||(19902568-19902623)
chr2 (330-384)||(34415000-34415054)
chr2 (136-174)||(42013869-42013907)
[»] chr4 (15 HSPs)
chr4 (803-909)||(9074246-9074352)
chr4 (184-293)||(47450261-47450370)
chr4 (220-293)||(54051816-54051889)
chr4 (121-174)||(6368673-6368726)
chr4 (616-674)||(9074476-9074534)
chr4 (717-762)||(27059342-27059387)
chr4 (120-180)||(6400395-6400455)
chr4 (388-449)||(9075639-9075703)
chr4 (103-185)||(18309589-18309673)
chr4 (330-384)||(18407341-18407395)
chr4 (103-185)||(18407566-18407650)
chr4 (616-674)||(36071942-36072000)
chr4 (717-766)||(5263107-5263156)
chr4 (435-468)||(6400643-6400676)
chr4 (125-174)||(19323416-19323465)
[»] chr8 (7 HSPs)
chr8 (687-772)||(2287713-2287798)
chr8 (646-766)||(17018536-17018656)
chr8 (646-766)||(17548973-17549093)
chr8 (799-879)||(7084871-7084951)
chr8 (130-174)||(17017997-17018040)
chr8 (130-174)||(17548434-17548477)
chr8 (132-166)||(13704880-13704914)
[»] chr6 (8 HSPs)
chr6 (110-174)||(32419294-32419358)
chr6 (110-174)||(32425135-32425199)
chr6 (616-788)||(32427673-32427849)
chr6 (395-442)||(33680389-33680436)
chr6 (388-449)||(32419557-32419618)
chr6 (634-783)||(32419848-32419997)
chr6 (388-449)||(32425398-32425459)
chr6 (634-783)||(32425689-32425838)
[»] chr1 (7 HSPs)
chr1 (114-173)||(11897374-11897433)
chr1 (400-449)||(7492276-7492325)
chr1 (103-180)||(15500857-15500937)
chr1 (332-444)||(11896805-11896926)
chr1 (330-384)||(15249759-15249813)
chr1 (718-784)||(28639339-28639405)
chr1 (729-766)||(3662216-3662253)
[»] chr5 (14 HSPs)
chr5 (103-180)||(24204424-24204504)
chr5 (393-446)||(26203774-26203827)
chr5 (125-170)||(27354960-27355005)
chr5 (799-839)||(13909440-13909480)
chr5 (103-168)||(34314781-34314849)
chr5 (646-697)||(12370496-12370547)
chr5 (708-783)||(17365482-17365557)
chr5 (433-467)||(17134742-17134776)
chr5 (227-293)||(17134961-17135027)
chr5 (338-384)||(18180286-18180332)
chr5 (318-384)||(22415603-22415669)
chr5 (809-882)||(17133638-17133711)
chr5 (801-834)||(17168053-17168086)
chr5 (727-760)||(36519291-36519324)
[»] chr3 (9 HSPs)
chr3 (124-186)||(4159320-4159382)
chr3 (388-465)||(25232511-25232591)
chr3 (333-384)||(4143753-4143804)
chr3 (124-186)||(4143510-4143572)
chr3 (129-174)||(25232250-25232294)
chr3 (403-451)||(10687155-10687203)
chr3 (120-159)||(9236799-9236838)
chr3 (388-449)||(4478168-4478229)
chr3 (330-359)||(30458097-30458126)
[»] scaffold0150 (2 HSPs)
scaffold0150 (120-179)||(16975-17034)
scaffold0150 (130-179)||(11488-11537)
[»] scaffold0050 (1 HSPs)
scaffold0050 (848-917)||(77793-77862)
[»] scaffold0016 (1 HSPs)
scaffold0016 (120-185)||(106442-106507)


Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 121 - 602
Target Start/End: Complemental strand, 2671086 - 2670600
Alignment:
Q  121 tatctttcatagtacatttacattaacattgaagcttattacacaaaattattatacaccgaatgtggtgcaagaaaatggagggggaacgaggatgtgg 220  Q
    |||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  2671086 tatctttcatagcacatttacattaccattgaggcttattacacaaaattattatacaccgaatgtggtgcaagaaaatggagagggaacgaggatgggg 2670987  T
Q  221 taagatttgtttcctatttagggataataagactttgattatcaaccttacacccaaagagatcaaccttacattcatattggtgccaattaacagaatg 320  Q
    ||||||||||||||| |||||||| | | ||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| ||||| ||    
T  2670986 taagatttgtttcctctttagggagagtgagactttgattatcaaccttacacccaaacagatcaaccttacactaatattggtgccaatttacagactg 2670887  T
Q  321 acacaataccctttgatcattcatacaatccctaaaatattagagttacctgtttgtatgaaagt---------ggagcaaattgtagaagaaaagtgaa 411  Q
    ||||||||||| |||| |||||| |||||||||||||||||||    |||| |||||||||||||         | ||||||||||||||||||||||||    
T  2670886 acacaatacccgttgaccattcacacaatccctaaaatattag----acctttttgtatgaaagtacaacagtagaagcaaattgtagaagaaaagtgaa 2670791  T
Q  412 ggagagaatctgagatgaaatgagaatttgtgaaggatggtgcatagagtgtaacagtccaataatccgggtnnnnnnnnngcggtcaaacaggtttgac 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||         ||||||||||| |||||||    
T  2670790 ggagagaatctgagatgaaatgagaatttgtgaaggatggtgcatatagtgtaacagtccaataatccgggt-aaaaaacagcggtcaaacacgtttgac 2670692  T
Q  512 cagtcaaggga-tcaaagaaaaatgtctttaacaagtcagtcttattgagaaagctaccatctacactcagaactggttcagattatataat 602  Q
    ||||||||| |  ||||||||||||| ||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||    
T  2670691 cagtcaaggaacccaaagaaaaatgtgtttaacaagtcagtcttgttgagaaagcaaccatccacactcagaactggttcagattatataat 2670600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 727 - 966
Target Start/End: Complemental strand, 2669879 - 2669634
Alignment:
Q  727 ggtctacattgcaccgacagtttatgtggtccacgatgcatagaaaattttataaatagacgnnnnnnnnnngttcatttgttgtaaaacacatcaaaga 826  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||    
T  2669879 ggtctacattgcaccgacagtttatgtggtccacgatgcatagaaaattttataaatagacgtttttttt--gttcatttgttgtaaaacacatcaaaga 2669782  T
Q  827 actatgaaaaatta----tcacgcgaatctaaacacaaagaagttgttatgaacttgatcttgttgcgataccgatagaaatatgtcagttgac-agata 921  Q
    ||||||||||||||    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  2669781 actatgaaaaattaattatcacgcgaatctgaacacaaagaagttgttatgaacttgatcttgttgcggtaccgatagaaatatgtcagttgacaagata 2669682  T
Q  922 atggggtcaagttaaaa--ccctcttgc-acaccttccctttcattat 966  Q
    || || |||||||||||   |||||||| |||||||||||||||||||    
T  2669681 ataggatcaagttaaaaacacctcttgcaacaccttccctttcattat 2669634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 718 - 784
Target Start/End: Original strand, 6056029 - 6056095
Alignment:
Q  718 tttttctgaggtctacattgcaccgacagtttatgtggtccacgatgcatagaaaattttataaata 784  Q
    ||||| || ||||||||||||||||||||||||||||||||||||| || | ||| || ||||||||    
T  6056029 tttttatgtggtctacattgcaccgacagtttatgtggtccacgattcacaaaaacttctataaata 6056095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 3486910 - 3486975
Alignment:
Q  120 atatctttcatagtacatttacattaacattgaagcttattacacaaaattattatacaccgaatg 185  Q
    ||||||||||||||| ||||||| |||  |||||||||||||||||||||||| | ||||| ||||    
T  3486910 atatctttcatagtatatttacactaatgttgaagcttattacacaaaattatcaaacacctaatg 3486975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 646 - 759
Target Start/End: Complemental strand, 24459641 - 24459528
Alignment:
Q  646 tgtgttaaaactcatactttgtaaggtgacagacaatttggattttataatctcaaccaatcaagtacataatttttctgaggtctacattgcaccgaca 745  Q
    ||||||||||||||||||||||| |||  || ||| ||| ||||| ||| |   ||||| |||||||||| ||||||||  |||| | ||||||| ||||    
T  24459641 tgtgttaaaactcatactttgtagggtttcaaacattttagatttaatatttcgaaccagtcaagtacatgatttttctatggtccatattgcacagaca 24459542  T
Q  746 gtttatgtggtcca 759  Q
     |||||||||||||    
T  24459541 atttatgtggtcca 24459528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 397 - 450
Target Start/End: Original strand, 34877235 - 34877288
Alignment:
Q  397 tagaagaaaagtgaaggagagaatctgagatgaaatgagaatttgtgaaggatg 450  Q
    ||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||    
T  34877235 tagaagaaaagcgaatgagagaatgtgagatggaatgagaatttgtgaaggatg 34877288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 12575408 - 12575342
Alignment:
Q  103 tctcattttattaat---ttatatctttcatagtacatttacattaacattgaagcttattacacaa 166  Q
    |||||||||||||||   | ||||||||||||||| |||||||||  ||||||||| ||||||||||    
T  12575408 tctcattttattaatagatcatatctttcatagtaaatttacatttccattgaagcatattacacaa 12575342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 180
Target Start/End: Complemental strand, 3221421 - 3221370
Alignment:
Q  129 atagtacatttacattaacattgaagcttattacacaaaattattatacacc 180  Q
    |||||| ||||||| ||| ||||||||||||||||||||||| ||| |||||    
T  3221421 atagtatatttacaataaaattgaagcttattacacaaaattgttaaacacc 3221370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 18046037 - 18045976
Alignment:
Q  124 ctttcatagtacatttacattaacattgaagcttattacacaaaattattatacaccgaatg 185  Q
    ||||||||||||||||||| |||  || |||||| |||||||||||| ||| ||||| ||||    
T  18046037 ctttcatagtacatttacaataaatttcaagcttgttacacaaaattgttaaacacctaatg 18045976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 34876945 - 34877008
Alignment:
Q  103 tctcattttattaat---ttatatctttcatagtacatttacattaacattgaagcttattaca 163  Q
    |||||||||||||||   | ||||||||||||||| ||||||||||||| ||||| ||| ||||    
T  34876945 tctcattttattaatagatcatatctttcatagtatatttacattaacaatgaagtttagtaca 34877008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 120 - 186
Target Start/End: Original strand, 29145224 - 29145290
Alignment:
Q  120 atatctttcatagtacatttacattaacattgaagcttattacacaaaattattatacaccgaatgt 186  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| ||||| |||||    
T  29145224 atatctttcatattacatttacattaacattgaagcttattactcaacattattaaacacctaatgt 29145290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 32121630 - 32121683
Alignment:
Q  332 tttgatcattcatacaatccctaaaatattagagttacctgtttgtatgaaagt 385  Q
    ||||| ||||||||||||| ||||||||||||||| || | |||||||||||||    
T  32121630 tttgaccattcatacaatcgctaaaatattagagtaacatttttgtatgaaagt 32121683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 339 - 384
Target Start/End: Complemental strand, 43924838 - 43924793
Alignment:
Q  339 attcatacaatccctaaaatattagagttacctgtttgtatgaaag 384  Q
    ||||||||||||||||||||| |||||| |||| ||||||||||||    
T  43924838 attcatacaatccctaaaatactagagtaacctttttgtatgaaag 43924793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 707 - 762
Target Start/End: Complemental strand, 19902623 - 19902568
Alignment:
Q  707 caagtacataatttttctgaggtctacattgcaccgacagtttatgtggtccacga 762  Q
    ||||||||  |||||| || |||| |||||||||||||| ||||||||||||||||    
T  19902623 caagtacaacatttttatgtggtccacattgcaccgacaatttatgtggtccacga 19902568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 330 - 384
Target Start/End: Original strand, 34415000 - 34415054
Alignment:
Q  330 cctttgatcattcatacaatccctaaaatattagagttacctgtttgtatgaaag 384  Q
    ||||||| |||||| |||||| ||||||||||||||| |||| ||||||| ||||    
T  34415000 cctttgaccattcagacaatctctaaaatattagagtaacctttttgtataaaag 34415054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 42013869 - 42013907
Alignment:
Q  136 atttacattaacattgaagcttattacacaaaattatta 174  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  42013869 atttacaataacattgaagcttattacacataattatta 42013907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 803 - 909
Target Start/End: Complemental strand, 9074352 - 9074246
Alignment:
Q  803 atttgttgtaaaacacatcaaagaactatgaaaaattatcacgcgaatctaaacacaaagaagttgttatgaacttgatcttgttgcgataccgatagaa 902  Q
    ||||| |||||||||||| |||||||| ||||||||||||  | | || | ||||| |||| ||||||||||||| ||||||||||  || || ||||||    
T  9074352 atttgctgtaaaacacataaaagaactttgaaaaattatcttgtggatatgaacaccaagaggttgttatgaactagatcttgttgtcatgccaatagaa 9074253  T
Q  903 atatgtc 909  Q
    |||||||    
T  9074252 atatgtc 9074246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 293
Target Start/End: Complemental strand, 47450370 - 47450261
Alignment:
Q  184 tgtggtgcaagaaaatggagggggaacgaggatgtggtaagatttgtttcctatttagggataataagactttgattatcaaccttacacccaaagagat 283  Q
    |||||| |||||| |||||||||||| |||| |  |||||| |||||||||| | || ||  ||  ||||||||||  |||| |||||||||||||||||    
T  47450370 tgtggttcaagaagatggagggggaatgaggctacggtaaggtttgtttcctttctatggtgaaggagactttgatggtcaatcttacacccaaagagat 47450271  T
Q  284 caaccttaca 293  Q
    ||||||||||    
T  47450270 caaccttaca 47450261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 220 - 293
Target Start/End: Complemental strand, 54051889 - 54051816
Alignment:
Q  220 gtaagatttgtttcctatttagggataataagactttgattatcaaccttacacccaaagagatcaaccttaca 293  Q
    |||||||||||||||||| ||| || || ||||||||||| |||||||||||| ||| | ||||||||||||||    
T  54051889 gtaagatttgtttcctatctagagagaagaagactttgatgatcaaccttacatccagacagatcaaccttaca 54051816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 6368673 - 6368726
Alignment:
Q  121 tatctttcatagtacatttacattaacattgaagcttattacacaaaattatta 174  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| ||| ||||    
T  6368673 tatctttcatagtacatttacatttccattgaagcttattacacataataatta 6368726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 616 - 674
Target Start/End: Complemental strand, 9074534 - 9074476
Alignment:
Q  616 tttaatgtatgttgctgaaatttaattacttgtgttaaaactcatactttgtaaggtga 674  Q
    |||||||||||||||||||||| |||| | ||||||||||||  ||||||||| |||||    
T  9074534 tttaatgtatgttgctgaaattaaatttcatgtgttaaaacttgtactttgtagggtga 9074476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 717 - 762
Target Start/End: Original strand, 27059342 - 27059387
Alignment:
Q  717 atttttctgaggtctacattgcaccgacagtttatgtggtccacga 762  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||    
T  27059342 atttttctatggtccacattgcaccgacagtttatgtggtccacga 27059387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 6400395 - 6400455
Alignment:
Q  120 atatctttcatagtacatttacattaacattgaagcttattacacaaaattattatacacc 180  Q
    ||||||||||||||| ||||| |||  |||||||||||||||||| |||| |||| |||||    
T  6400395 atatctttcatagtaaatttatattttcattgaagcttattacactaaataattaaacacc 6400455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 388 - 449
Target Start/End: Complemental strand, 9075703 - 9075639
Alignment:
Q  388 agcaaattgtagaagaaaagtgaaggagagaatctga---gatgaaatgagaatttgtgaaggat 449  Q
    |||| ||||||||||||||| |||||||| ||| |||   ||||||||||||||| |||||||||    
T  9075703 agcacattgtagaagaaaagagaaggagaaaatgtgagatgatgaaatgagaattcgtgaaggat 9075639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 18309673 - 18309589
Alignment:
Q  103 tctcattttattaatttat--at-ctttcatagtacatttacattaacattgaagcttattacacaaaattattatacaccgaatg 185  Q
    |||||||||||||||||||  || |||||||||||||||||||| |||| |||| |||||| ||  ||||||||| ||||| ||||    
T  18309673 tctcattttattaatttatcaatactttcatagtacatttacatcaaca-tgaatcttattgcaagaaattattaaacacctaatg 18309589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 330 - 384
Target Start/End: Complemental strand, 18407395 - 18407341
Alignment:
Q  330 cctttgatcattcatacaatccctaaaatattagagttacctgtttgtatgaaag 384  Q
    ||||||| |||||||||||||||||||| |||||||| || | ||| ||||||||    
T  18407395 cctttgaccattcatacaatccctaaaacattagagtaacatttttatatgaaag 18407341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 18407650 - 18407566
Alignment:
Q  103 tctcattttattaatttat--at-ctttcatagtacatttacattaacattgaagcttattacacaaaattattatacaccgaatg 185  Q
    |||||||||||||||||||  || |||||||||||||||||||| |||| |||| |||||| ||  ||||||||| ||||| ||||    
T  18407650 tctcattttattaatttatcaatactttcatagtacatttacatcaaca-tgaatcttattgcaagaaattattaaacacctaatg 18407566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 616 - 674
Target Start/End: Complemental strand, 36072000 - 36071942
Alignment:
Q  616 tttaatgtatgttgctgaaatttaattacttgtgttaaaactcatactttgtaaggtga 674  Q
    |||| ||||||| | ||||||| |||||| | ||||||||||||||||||||| |||||    
T  36072000 tttattgtatgtcgttgaaattaaattacatttgttaaaactcatactttgtagggtga 36071942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 717 - 766
Target Start/End: Original strand, 5263107 - 5263156
Alignment:
Q  717 atttttctgaggtctacattgcaccgacagtttatgtggtccacgatgca 766  Q
    ||||||||  |||| ||||||||| ||||| |||||||||||||||||||    
T  5263107 atttttctatggtccacattgcactgacagattatgtggtccacgatgca 5263156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 435 - 468
Target Start/End: Original strand, 6400643 - 6400676
Alignment:
Q  435 gaatttgtgaaggatggtgcatagagtgtaacag 468  Q
    ||||||||||||||||||| ||||||||||||||    
T  6400643 gaatttgtgaaggatggtggatagagtgtaacag 6400676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 19323416 - 19323465
Alignment:
Q  125 tttcatagtacatttacattaacattgaagcttattacacaaaattatta 174  Q
    ||||||| ||||||||||||  ||||||||||||||||| ||||| ||||    
T  19323416 tttcataatacatttacattgtcattgaagcttattacaaaaaataatta 19323465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 687 - 772
Target Start/End: Complemental strand, 2287798 - 2287713
Alignment:
Q  687 attttataatctcaaccaatcaagtacataatttttctgaggtctacattgcaccgacagtttatgtggtccacgatgcatagaaa 772  Q
    |||||| ||||  |||||||||||||||| ||||||||| |||| ||||| |||||||| ||||| |||||||||| ||| |||||    
T  2287798 attttaaaatccaaaccaatcaagtacatgatttttctgtggtccacattacaccgacaatttatatggtccacgaggcaaagaaa 2287713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 646 - 766
Target Start/End: Original strand, 17018536 - 17018656
Alignment:
Q  646 tgtgttaaaactcatactttgtaaggtgacagacaatttggattttataatctcaaccaatcaagtacataatttttctgaggtctacattgcaccgaca 745  Q
    ||||||||||||| | ||||||||||||   |||||||   ||| |||||||| ||||| |||||||||| | |||| || |||| |||||||||  |      
T  17018536 tgtgttaaaactcgtgctttgtaaggtgtaggacaattcatattatataatctgaaccagtcaagtacatgaattttttgtggtccacattgcactaaat 17018635  T
Q  746 gtttatgtggtccacgatgca 766  Q
    |||||||||||||||||||||    
T  17018636 gtttatgtggtccacgatgca 17018656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 646 - 766
Target Start/End: Original strand, 17548973 - 17549093
Alignment:
Q  646 tgtgttaaaactcatactttgtaaggtgacagacaatttggattttataatctcaaccaatcaagtacataatttttctgaggtctacattgcaccgaca 745  Q
    ||||||||||||| | ||||||||||||   |||||||   ||| |||||||| ||||| |||||||||| | |||| || |||| |||||||||  |      
T  17548973 tgtgttaaaactcgtgctttgtaaggtgtaggacaattcatattatataatctgaaccagtcaagtacatgaattttttgtggtccacattgcactaaat 17549072  T
Q  746 gtttatgtggtccacgatgca 766  Q
    |||||||||||||||||||||    
T  17549073 gtttatgtggtccacgatgca 17549093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 799 - 879
Target Start/End: Original strand, 7084871 - 7084951
Alignment:
Q  799 gttcatttgttgtaaaacacatcaaagaactatgaaaaattatcacgcgaatctaaacacaaagaagttgttatgaacttg 879  Q
    |||||| |||||||||||||||||||||||| |||| | |||||  | |||||  ||||||||| |||| || ||||||||    
T  7084871 gttcatctgttgtaaaacacatcaaagaactgtgaatacttatctagtgaatcagaacacaaagcagtttttttgaacttg 7084951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 17017997 - 17018040
Alignment:
Q  130 tagtacatttacattaacattgaagcttattacacaaaattatta 174  Q
    |||||||||||||||||  ||||||||||||||||||||||||||    
T  17017997 tagtacatttacattaag-ttgaagcttattacacaaaattatta 17018040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 17548434 - 17548477
Alignment:
Q  130 tagtacatttacattaacattgaagcttattacacaaaattatta 174  Q
    |||||||||||||||||  ||||||||||||||||||||||||||    
T  17548434 tagtacatttacattaag-ttgaagcttattacacaaaattatta 17548477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 13704880 - 13704914
Alignment:
Q  132 gtacatttacattaacattgaagcttattacacaa 166  Q
    ||||||||||||||||||||||| |||||||||||    
T  13704880 gtacatttacattaacattgaagtttattacacaa 13704914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 32419294 - 32419358
Alignment:
Q  110 ttattaatttatatctttcatagtacatttacattaacattgaagcttattacacaaaattatta 174  Q
    ||||||| | |||| ||| |||||||||||||||||| |||||||||| ||||||||||||||||    
T  32419294 ttattaaatcatattttttatagtacatttacattaatattgaagctttttacacaaaattatta 32419358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 32425135 - 32425199
Alignment:
Q  110 ttattaatttatatctttcatagtacatttacattaacattgaagcttattacacaaaattatta 174  Q
    ||||||| | |||| ||| |||||||||||||||||| |||||||||| ||||||||||||||||    
T  32425135 ttattaaatcatattttttatagtacatttacattaatattgaagctttttacacaaaattatta 32425199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 616 - 788
Target Start/End: Original strand, 32427673 - 32427849
Alignment:
Q  616 tttaatgtatgttgctgaaatttaattacttgtgttaaaactcatactttgtaaggtgacagacaatttggattt----tataatctcaaccaatcaagt 711  Q
    |||||| ||||| | | ||||| ||||||  ||||||||| || ||||||||| ||||| ||||||||  ||||     |||| ||  ||||| | ||||    
T  32427673 tttaatatatgtcgttcaaattaaattacccgtgttaaaattcgtactttgtagggtgagagacaattcagattaattatatattccgaaccagttaagt 32427772  T
Q  712 acataatttttctgaggtctacattgcaccgacagtttatgtggtccacgatgcatagaaaattttataaatagacg 788  Q
    |||| ||||||||| |||| | |||||||||||| ||||| |||||||||| ||| |  || || ||||||||||||    
T  32427773 acatgatttttctgtggtccatattgcaccgacaatttatttggtccacgacgcacaacaacttgtataaatagacg 32427849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 442
Target Start/End: Original strand, 33680389 - 33680436
Alignment:
Q  395 tgtagaagaaaagtgaaggagagaatctgagatgaaatgagaatttgt 442  Q
    ||||||||||||| |||||||  ||| |||||||||||||||||||||    
T  33680389 tgtagaagaaaagagaaggaggaaatgtgagatgaaatgagaatttgt 33680436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 449
Target Start/End: Original strand, 32419557 - 32419618
Alignment:
Q  388 agcaaattgtagaagaaaagtgaaggagagaatctgagatgaaatgagaatttgtgaaggat 449  Q
    ||||| |||||||||||||| ||| ||||||||  |||||| | |||||||| |||||||||    
T  32419557 agcaatttgtagaagaaaagagaacgagagaatgcgagatggagtgagaattcgtgaaggat 32419618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 634 - 783
Target Start/End: Original strand, 32419848 - 32419997
Alignment:
Q  634 aatttaattacttgtgttaaaactcatactttgtaaggtgacagacaatttggattttataatctcaaccaatcaagtacataatttttctgaggtctac 733  Q
    |||| ||||| ||||||||||||||  |||||||| | ||| ||||||||   ||| |||||||  ||| | ||||| ||| ||||||| || |||||||    
T  32419848 aattcaattatttgtgttaaaactcgcactttgtaggatgagagacaattcaaattatataatccgaactagtcaagcacacaatttttatgtggtctac 32419947  T
Q  734 attgcaccgacagtttatgtggtccacgatgcatagaaaattttataaat 783  Q
    |||| ||| | | ||| | ||||| |||  ||||| |||||| |||||||    
T  32419948 attgaaccaataatttctatggtctacgtcgcataaaaaattctataaat 32419997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 449
Target Start/End: Original strand, 32425398 - 32425459
Alignment:
Q  388 agcaaattgtagaagaaaagtgaaggagagaatctgagatgaaatgagaatttgtgaaggat 449  Q
    ||||| |||||||||||||| ||| ||||||||  |||||| | |||||||| |||||||||    
T  32425398 agcaatttgtagaagaaaagagaacgagagaatgcgagatggagtgagaattcgtgaaggat 32425459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 634 - 783
Target Start/End: Original strand, 32425689 - 32425838
Alignment:
Q  634 aatttaattacttgtgttaaaactcatactttgtaaggtgacagacaatttggattttataatctcaaccaatcaagtacataatttttctgaggtctac 733  Q
    |||| ||||| ||||||||||||||  |||||||| | ||| ||||||||   ||| |||||||  ||| | ||||| ||| ||||||| || |||||||    
T  32425689 aattcaattatttgtgttaaaactcgcactttgtaggatgagagacaattcaaattatataatccgaactagtcaagcacacaatttttatgtggtctac 32425788  T
Q  734 attgcaccgacagtttatgtggtccacgatgcatagaaaattttataaat 783  Q
    |||| ||| | | ||| | ||||| |||  ||||| |||||| |||||||    
T  32425789 attgaaccaataatttctatggtctacgtcgcataaaaaattctataaat 32425838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 11897433 - 11897374
Alignment:
Q  114 taatttatatctttcatagtacatttacattaacattgaagcttattacacaaaattatt 173  Q
    |||||||||||||| || ||| |||||||||  |||||||||||||||||||||||||||    
T  11897433 taatttatatcttttattgtatatttacattgtcattgaagcttattacacaaaattatt 11897374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 400 - 449
Target Start/End: Original strand, 7492276 - 7492325
Alignment:
Q  400 aagaaaagtgaaggagagaatctgagatgaaatgagaatttgtgaaggat 449  Q
    |||||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  7492276 aagaaaagagaaggagagaatctgagatggaatgagaatttatgaaggat 7492325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 180
Target Start/End: Complemental strand, 15500937 - 15500857
Alignment:
Q  103 tctcattttattaatttata---tctttcatagtacatttacattaacattgaagcttattacacaaaattattatacacc 180  Q
    ||||||||||||||| | ||   ||||||||| |||||||||| ||| |||||||| |||||||||||||| ||| |||||    
T  15500937 tctcattttattaatatgtaaattctttcataatacatttacaataaaattgaagcctattacacaaaattgttaaacacc 15500857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 332 - 444
Target Start/End: Complemental strand, 11896926 - 11896805
Alignment:
Q  332 tttgatcattcatacaatccctaaaatattagagttacctgtttgtatgaaa--------gtgg-agcaaattgtagaagaaaagtgaaggagagaatct 422  Q
    ||||| |||||||||||||| |||||||||||||| || | |||||||||||         ||| |||| |||||||||| |||  ||| |||||||| |    
T  11896926 tttgaccattcatacaatccataaaatattagagtaacatttttgtatgaaacacaaactatggaagcacattgtagaagtaaaaagaacgagagaatgt 11896827  T
Q  423 gagatgaaatgagaatttgtga 444  Q
    |||||||||| |||||||||||    
T  11896826 gagatgaaataagaatttgtga 11896805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 330 - 384
Target Start/End: Complemental strand, 15249813 - 15249759
Alignment:
Q  330 cctttgatcattcatacaatccctaaaatattagagttacctgtttgtatgaaag 384  Q
    ||||||| | ||||||||||| || |||||||||||| |||| ||||||||||||    
T  15249813 cctttgaccgttcatacaatctctgaaatattagagtaacctttttgtatgaaag 15249759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 718 - 784
Target Start/End: Original strand, 28639339 - 28639405
Alignment:
Q  718 tttttctgaggtctacattgcaccgacagtttatgtggtccacgatgcatagaaaattttataaata 784  Q
    ||||| || |||| |||||||||||||||||||| |||||||||| ||| | |||  ||||||||||    
T  28639339 tttttgtgcggtccacattgcaccgacagtttatttggtccacgacgcacataaacctttataaata 28639405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 729 - 766
Target Start/End: Original strand, 3662216 - 3662253
Alignment:
Q  729 tctacattgcaccgacagtttatgtggtccacgatgca 766  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  3662216 tctacaatgcatcgacagtttatgtggtccacgatgca 3662253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 180
Target Start/End: Complemental strand, 24204504 - 24204424
Alignment:
Q  103 tctcattttattaatttatat---ctttcatagtacatttacattaacattgaagcttattacacaaaattattatacacc 180  Q
    ||||||||||||||| ||||    ||||||||||||||||||| ||| ||||||| |||||| |||||||||||| |||||    
T  24204504 tctcattttattaatatataaatactttcatagtacatttacaataaaattgaagtttattatacaaaattattaaacacc 24204424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 393 - 446
Target Start/End: Original strand, 26203774 - 26203827
Alignment:
Q  393 attgtagaagaaaagtgaaggagagaatctgagatgaaatgagaatttgtgaag 446  Q
    ||||||||||||||| |||||| ||||| ||||||| |||||||||||||||||    
T  26203774 attgtagaagaaaagagaaggatagaatgtgagatggaatgagaatttgtgaag 26203827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 27354960 - 27355005
Alignment:
Q  125 tttcatagtacatttacattaacattgaagcttattacacaaaatt 170  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||    
T  27354960 tttcatagtacatttacaataaaattgaagcttattacacaaaatt 27355005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 799 - 839
Target Start/End: Original strand, 13909440 - 13909480
Alignment:
Q  799 gttcatttgttgtaaaacacatcaaagaactatgaaaaatt 839  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  13909440 gttcatttgttgtaaaacacaacaaagaactatgaaaaatt 13909480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 168
Target Start/End: Complemental strand, 34314849 - 34314781
Alignment:
Q  103 tctcattttattaat---ttatatctttcatagtacatttacattaacattgaagcttattacacaaaa 168  Q
    |||||||||||||||   | |||||||||||| || ||||||||| ||||||||||||||| |||||||    
T  34314849 tctcattttattaatagatgatatctttcataatatatttacatttacattgaagcttattgcacaaaa 34314781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 646 - 697
Target Start/End: Complemental strand, 12370547 - 12370496
Alignment:
Q  646 tgtgttaaaactcatactttgtaaggtgacagacaatttggattttataatc 697  Q
    ||||||||||||||||||||||| |||||  || |||||||||| |||||||    
T  12370547 tgtgttaaaactcatactttgtagggtgaatgataatttggattgtataatc 12370496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 708 - 783
Target Start/End: Original strand, 17365482 - 17365557
Alignment:
Q  708 aagtacataatttttctgaggtctacattgcaccgacagtttatgtggtccacgatgcatagaaaattttataaat 783  Q
    ||||||||||||||| || |||| || ||||||||||||||| | |||||||| |||||   |||||| |||||||    
T  17365482 aagtacataatttttttgtggtccacgttgcaccgacagtttctatggtccacaatgcaccaaaaattctataaat 17365557  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 433 - 467
Target Start/End: Complemental strand, 17134776 - 17134742
Alignment:
Q  433 gagaatttgtgaaggatggtgcatagagtgtaaca 467  Q
    |||| ||||||||||||||||||||||||||||||    
T  17134776 gagattttgtgaaggatggtgcatagagtgtaaca 17134742  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 293
Target Start/End: Complemental strand, 17135027 - 17134961
Alignment:
Q  227 ttgtttcctatttagggataataagactttgattatcaaccttacacccaaagagatcaaccttaca 293  Q
    ||||||||| | |||||| ||| |||||||||| ||||||||||||| || | || |||||||||||    
T  17135027 ttgtttcctgtctagggagaatgagactttgatgatcaaccttacacacagacaggtcaaccttaca 17134961  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 338 - 384
Target Start/End: Complemental strand, 18180332 - 18180286
Alignment:
Q  338 cattcatacaatccctaaaatattagagttacctgtttgtatgaaag 384  Q
    |||||||||||||| ||||||| |||||| |||| ||||||||||||    
T  18180332 cattcatacaatccataaaatactagagtaacctttttgtatgaaag 18180286  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 318 - 384
Target Start/End: Original strand, 22415603 - 22415669
Alignment:
Q  318 atgacacaataccctttgatcattcatacaatccctaaaatattagagttacctgtttgtatgaaag 384  Q
    ||||||| || ||| |||| |||||||||||||||| ||||  ||||||| ||| ||||||||||||    
T  22415603 atgacaccatccccattgaccattcatacaatccctgaaattctagagtttcctttttgtatgaaag 22415669  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 809 - 882
Target Start/End: Complemental strand, 17133711 - 17133638
Alignment:
Q  809 tgtaaaacacatcaaagaactatgaaaaattatcacgcgaatctaaacacaaagaagttgttatgaacttgatc 882  Q
    ||||||||||| |||| |||||||||||||||||    | |||| |||| ||||||||| || |||||||||||    
T  17133711 tgtaaaacacaacaaataactatgaaaaattatccgatggatcttaacaaaaagaagttattgtgaacttgatc 17133638  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 801 - 834
Target Start/End: Complemental strand, 17168086 - 17168053
Alignment:
Q  801 tcatttgttgtaaaacacatcaaagaactatgaa 834  Q
    ||||||||||||||||||| ||||||||||||||    
T  17168086 tcatttgttgtaaaacacaacaaagaactatgaa 17168053  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 727 - 760
Target Start/End: Original strand, 36519291 - 36519324
Alignment:
Q  727 ggtctacattgcaccgacagtttatgtggtccac 760  Q
    ||||||||||||||||||| ||||||||||||||    
T  36519291 ggtctacattgcaccgacaatttatgtggtccac 36519324  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 4159320 - 4159382
Alignment:
Q  124 ctttcatagtacatttacattaacattgaagcttattacacaaaattattatacaccgaatgt 186  Q
    ||||||||||||||||||| ||| |||||||||| |||||||||||| ||| ||||| |||||    
T  4159320 ctttcatagtacatttacaataagattgaagcttgttacacaaaattgttaaacacctaatgt 4159382  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 388 - 465
Target Start/End: Original strand, 25232511 - 25232591
Alignment:
Q  388 agcaaattgtagaagaaaagtgaaggagagaatctgagatgaa---atgagaatttgtgaaggatggtgcatagagtgtaa 465  Q
    |||| |||||| ||||||||  ||||||| ||| ||||||||    |||||||||||||||||||||||||||||||||||    
T  25232511 agcacattgtaaaagaaaagaaaaggagataatgtgagatgatggtatgagaatttgtgaaggatggtgcatagagtgtaa 25232591  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 4143753 - 4143804
Alignment:
Q  333 ttgatcattcatacaatccctaaaatattagagttacctgtttgtatgaaag 384  Q
    |||||| ||||||||||||||||||||||||||| |||| || |||||||||    
T  4143753 ttgatcgttcatacaatccctaaaatattagagtaaccttttggtatgaaag 4143804  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 4143510 - 4143572
Alignment:
Q  124 ctttcatagtacatttacattaacattgaagcttattacacaaaattattatacaccgaatgt 186  Q
    ||||||||||||||||||| ||| |||||||||  |||||||||||| ||| ||||| |||||    
T  4143510 ctttcatagtacatttacaataagattgaagctggttacacaaaattgttaaacacctaatgt 4143572  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 25232250 - 25232294
Alignment:
Q  129 atagtacatttacattaacattgaagcttattacacaaaattatta 174  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||    
T  25232250 atagtacattt-cattaaaattgaagcttattacacaaaattatta 25232294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 403 - 451
Target Start/End: Complemental strand, 10687203 - 10687155
Alignment:
Q  403 aaaagtgaaggagagaatctgagatgaaatgagaatttgtgaaggatgg 451  Q
    ||||| ||||| || ||| ||||||||||||||||||||||||||||||    
T  10687203 aaaagagaaggcgaaaatgtgagatgaaatgagaatttgtgaaggatgg 10687155  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 159
Target Start/End: Original strand, 9236799 - 9236838
Alignment:
Q  120 atatctttcatagtacatttacattaacattgaagcttat 159  Q
    ||||||||||||||| ||||||||||||||||| ||||||    
T  9236799 atatctttcatagtatatttacattaacattgacgcttat 9236838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 449
Target Start/End: Complemental strand, 4478229 - 4478168
Alignment:
Q  388 agcaaattgtagaagaaaagtgaaggagagaatctgagatgaaatgagaatttgtgaaggat 449  Q
    |||| ||||||||||||||  |||  ||||||| ||||||| ||||| ||||||||||||||    
T  4478229 agcacattgtagaagaaaatagaaaaagagaatgtgagatggaatgataatttgtgaaggat 4478168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 330 - 359
Target Start/End: Original strand, 30458097 - 30458126
Alignment:
Q  330 cctttgatcattcatacaatccctaaaata 359  Q
    ||||||||||||||||||||||||||||||    
T  30458097 cctttgatcattcatacaatccctaaaata 30458126  T

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Target: scaffold0150 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 17034 - 16975
Alignment:
Q  120 atatctttcatagtacatttacattaacattgaagcttattacacaaaattattatacac 179  Q
    ||||||||  |||||||| ||||||||  |||||||||||||||||||||||||| ||||    
T  17034 atatcttttttagtacatatacattaatgttgaagcttattacacaaaattattaaacac 16975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 11537 - 11488
Alignment:
Q  130 tagtacatttacattaacattgaagcttattacacaaaattattatacac 179  Q
    |||||||| ||||||||  |||||||||||||||||||||||||| ||||    
T  11537 tagtacatatacattaatgttgaagcttattacacaaaattattaaacac 11488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 848 - 917
Target Start/End: Complemental strand, 77862 - 77793
Alignment:
Q  848 aatctaaacacaaagaagttgttatgaacttgatcttgttgcgataccgatagaaatatgtcagttgaca 917  Q
    ||||| ||||| |||| ||||||||||||| ||||||| |||  | || |||||||||||||||||||||    
T  77862 aatctgaacaccaagaggttgttatgaactcgatcttgctgccctgccaatagaaatatgtcagttgaca 77793  T

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Target: scaffold0016 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 106442 - 106507
Alignment:
Q  120 atatctttcatagtacatttacattaacattgaagcttattacacaaaattattatacaccgaatg 185  Q
    ||||||||| || ||| |||||||||||||||||||||||| |||| |||| ||| ||||| ||||    
T  106442 atatctttcgtattacgtttacattaacattgaagcttatttcacagaattgttaaacacctaatg 106507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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