View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4978-Insertion-20 (Length: 345)
Name: NF4978-Insertion-20
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978-Insertion-20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 29 - 342
Target Start/End: Original strand, 15176646 - 15176959
Alignment:
| Q |
29 |
caaatcttcttctctaatttctttctcctttttatcatctccaatcacccctttaatctcttgtacaagtttttgttgtatatcttggtacttcaccaaa |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15176646 |
caaatcttcttctctaatttctttctcctttttatcatctccaatcacccctttaatctcttgtacaagtttttcttgtatatcttggtacttcaccaaa |
15176745 |
T |
|
| Q |
129 |
ttcgccatgatccattccaatgcagttgaagttgtatctgttcccgcattcagaaactcggaacataaagtacaaattttaccatcatcaagttggctcc |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15176746 |
ttcgccatgatccattccaatgcagttgaagttgtatctgttcccgcatttagaaactcggaacataaagtacaaattttaccatcatcaagttggctcc |
15176845 |
T |
|
| Q |
229 |
ttttattatcttcttccaataactccaaatccaacaatgtatctacatatgacaaaacaaactcaccatgtgattcattgacattgttctctctatcaat |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
15176846 |
ttttattatcttcttccaataactccaaatccaacaatgtatctacatatgacaaaacaaattcaccatgtgattcattgagattgttctctctatcagt |
15176945 |
T |
|
| Q |
329 |
ccttaatctctctt |
342 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
15176946 |
ccttaatctctctt |
15176959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 193
Target Start/End: Complemental strand, 26506582 - 26506512
Alignment:
| Q |
123 |
accaaattcgccatgatccattccaatgcagttgaagttgtatctgttcccgcattcagaaactcggaaca |
193 |
Q |
| |
|
|||||||||||||| | ||| || |||||||||||||||||||||||||| ||| | |||||||| ||||| |
|
|
| T |
26506582 |
accaaattcgccataacccactctaatgcagttgaagttgtatctgttccggcagtgagaaactccgaaca |
26506512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 193
Target Start/End: Complemental strand, 2326945 - 2326867
Alignment:
| Q |
115 |
ggtacttcaccaaattcgccatgatccattccaatgcagttgaagttgtatctgttcccgcattcagaaactcggaaca |
193 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||| || || ||||| |||||||| || ||||||| |||||| ||||| |
|
|
| T |
2326945 |
ggtacttcaccaaattcgccataatccaatgcaaagcggtggaagtagtatctgtaccagcattcaaaaactccgaaca |
2326867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 193
Target Start/End: Complemental strand, 2303390 - 2303312
Alignment:
| Q |
115 |
ggtacttcaccaaattcgccatgatccattccaatgcagttgaagttgtatctgttcccgcattcagaaactcggaaca |
193 |
Q |
| |
|
||||||| |||||||||||||| ||||||| ||| | ||| ||||| ||||| || || ||||||||||||| ||||| |
|
|
| T |
2303390 |
ggtacttaaccaaattcgccataatccattgcaaagtagtggaagtagtatccgtcccaccattcagaaactctgaaca |
2303312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 193
Target Start/End: Complemental strand, 2350966 - 2350888
Alignment:
| Q |
115 |
ggtacttcaccaaattcgccatgatccattccaatgcagttgaagttgtatctgttcccgcattcagaaactcggaaca |
193 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| ||| || || ||||| |||||| | || ||||||| |||||| ||||| |
|
|
| T |
2350966 |
ggtacttcaccaaatttgccataatccattgcaaagccgtggaagtagtatctatcccagcattcaaaaactctgaaca |
2350888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University