View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4978-Insertion-23 (Length: 400)

Name: NF4978-Insertion-23
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4978-Insertion-23
NF4978-Insertion-23
[»] chr1 (1 HSPs)
chr1 (8-400)||(32190174-32190566)


Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 8 - 400
Target Start/End: Complemental strand, 32190566 - 32190174
Alignment:
Q  8 gaaacatctttatttatttgttcaaaactctccttacccccctcaagcaaaaatggaacaattatttgataatcaataatattatttctgtggtgaacaa 107  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32190566 gaaacatctttatttatttgttcaaaactctccttaaccccctcaagcaaaaatggaacaattatttgataatcaataatattatttctgtggtgaacaa 32190467  T
Q  108 aatttcatcatcttcaacatgttgcagtagccataagatcaccctgagaaattggcactctaagattggaagaagattttacaacattagcaggatttct 207  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32190466 aatttcatcatcttcaacatgttgcagtagccattagatcaccctgagaaattggcactctaagattggaagaagattttacaacgttagcaggatttct 32190367  T
Q  208 tgagttatataaaaattgtgccacaatcatagcactaggctctgcaacaatcttcttccatgtttcatcagcttcttttccatgcttcttaaaaacaggt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32190366 tgagttatataaaaattgtgccacaatcatagcactaggctctgcaacaatcttcttccatgtttcatcagcttcttttccatgcttcttaaaaacaggt 32190267  T
Q  308 gtagcatctaatcgatgaatgttccatctcttaacattcttaagccaatcaatttttcccagttgtttcttagctaatttccatgtatttatc 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32190266 gtagcatctaatcgatgaatgttccatctcttaacattcttaagccaatcaatttttcccagttgtttcttagctaatttccatgtatttatc 32190174  T

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