View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4978-Insertion-26 (Length: 232)
Name: NF4978-Insertion-26
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978-Insertion-26 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 232
Target Start/End: Original strand, 11386967 - 11387193
Alignment:
| Q |
7 |
agttgaagagttcccggtttggtccgggaattggtttcatcatgatcatt-acggataattttacgccactcggtatcaaatccgatcaccttggttcca |
105 |
Q |
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| T |
11386967 |
agttgaagagttcccggtttggtctgggaattggtttcatcatgatcatttaccgataattttacgccactcggtatcaaatccgatcaccttggttaca |
11387066 |
T |
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| Q |
106 |
taattgtctgtagggtgtaagaaagacgatatatgtttgtcaatcactttcttttgatttgtaatagtggttttgatttccattccatttagctcaaacg |
205 |
Q |
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| T |
11387067 |
taattgtctgtagggtgtaagaaagacgacatatgtttgtcaatcactttcttttgatttgtaatagtggttttgatttccattccatttagctcaaacg |
11387166 |
T |
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| Q |
206 |
atagaactttggtgtcatacatgatgt |
232 |
Q |
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| T |
11387167 |
atagaactttggtgtcatacatgatgt |
11387193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 11392962 - 11393184
Alignment:
| Q |
7 |
agttgaagagttcccggtttggtccgggaattggtttcatcatgatcattacggataattttacgccactcggtatcaaatccgatcaccttggttccat |
106 |
Q |
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| T |
11392962 |
agttgaatagttcccggtttggtccgggaattggttccatcttgatccttatcgataattttacgccactcagtatcaaatccgatcaccttggttccat |
11393061 |
T |
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| Q |
107 |
aattgtctgtagggtgtaagaaagacgatatatgtttgtcaatcactttcttttgatttgtaatagtggttttgatttccattccatttagctcaaacga |
206 |
Q |
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| T |
11393062 |
gattgtctgtagggcgtaagaaagacgatatatgttcgtcaatcactttcttttgatctgtaatggtggttttgatttccattccatttagctcaaacga |
11393161 |
T |
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| Q |
207 |
tagaactttggtgtcatacatga |
229 |
Q |
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| T |
11393162 |
tagaactttggtgtcatgcatga |
11393184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 157
Target Start/End: Original strand, 17198494 - 17198613
Alignment:
| Q |
38 |
tggtttcatcatgatcattacggataattttacgccactcggtatcaaatccgatcaccttggttccataattgtctgtagggtgtaagaaagacgatat |
137 |
Q |
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| T |
17198494 |
tggtttcatcgtgattgttatagataattggacgccactcggtatcaatcccaataaccttcgttccgtgattgttggtagggcgtaagaaagatgatat |
17198593 |
T |
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| Q |
138 |
atgtttgtcaatcactttct |
157 |
Q |
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| T |
17198594 |
atgatcgtcaatcaatttct |
17198613 |
T |
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