View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4978-Insertion-27 (Length: 264)

Name: NF4978-Insertion-27
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4978-Insertion-27
NF4978-Insertion-27
[»] chr4 (12 HSPs)
chr4 (8-264)||(46303076-46303331)
chr4 (181-247)||(46260219-46260285)
chr4 (19-92)||(46028656-46028730)
chr4 (28-70)||(46028755-46028797)
chr4 (28-70)||(46259774-46259816)
chr4 (19-92)||(46259841-46259915)
chr4 (119-224)||(46302825-46302930)
chr4 (152-190)||(46306664-46306702)
chr4 (19-70)||(46302648-46302699)
chr4 (19-92)||(46028452-46028524)
chr4 (19-92)||(46260048-46260120)
chr4 (19-92)||(46302729-46302806)
[»] chr8 (1 HSPs)
chr8 (156-213)||(4524663-4524720)


Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 264
Target Start/End: Original strand, 46303076 - 46303331
Alignment:
Q  8 caagaagatttattagaataattgggatgcaaatcataatctagtttatattatagaagattactgaaaacaaacatgcagaaagtacagttttatacag 107  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46303076 caagaagattgattagaataattgggatgcaaatcataatctagtttatattatagaagattaatgaaaacaaacatgcagaaagtacagttttatacag 46303175  T
Q  108 gaaggagcattctctggccaacaacataagtcaggaataacataaacccactaacacacatgattccaacctataaatgaaagtactcaattaactgctg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46303176 gaaggagcattctctggccaacaacataagtcaggaataacat-aacccactaacacacatgattccaacctataaatgaaagtactcaattaactgctg 46303274  T
Q  208 ctatattaataactactcttattgatattctttctcttcttctcagccatcccaatc 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46303275 ctatattaataactactcttattgatattctttctcttcttctcagccatcccaatc 46303331  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 46260219 - 46260285
Alignment:
Q  181 taaatgaaagtactcaattaactgctgctatattaataactactcttattgatattctttctcttct 247  Q
    ||||||| ||| ||| ||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  46260219 taaatgagagtcctcgattaactgctgctatattaataactactcttattgctcttctttctcttct 46260285  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 46028730 - 46028656
Alignment:
Q  19 attagaataattgggatgcaaatcataatc-tagtttatattatagaagattactgaaaacaaacatgcagaaag 92  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||| | | || ||||||||| ||||    
T  46028730 attagaataattgggatgcaaatcataatcttagtttatattacagaagattattaataataaacatgcataaag 46028656  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 46028797 - 46028755
Alignment:
Q  28 attgggatgcaaatcataatctagtttatattatagaagatta 70  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  46028797 attgggatgcaaatcataatctagtttatattagagaagatta 46028755  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 46259774 - 46259816
Alignment:
Q  28 attgggatgcaaatcataatctagtttatattatagaagatta 70  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  46259774 attgggatgcaaatcataatctagtttatattagagaagatta 46259816  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 46259841 - 46259915
Alignment:
Q  19 attagaataattgggatgcaaatcataatc-tagtttatattatagaagattactgaaaacaaacatgcagaaag 92  Q
    |||||||| ||||||||||||||||||||| |||||||||||| ||||||||| | | || ||||||||| ||||    
T  46259841 attagaatgattgggatgcaaatcataatcttagtttatattacagaagattattaataataaacatgcataaag 46259915  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 224
Target Start/End: Original strand, 46302825 - 46302930
Alignment:
Q  119 ctctggccaacaacataagtcaggaataacataaacccactaacacacatgattccaacctataaatgaaa-gtactcaattaactgctgctatattaat 217  Q
    |||| ||||||||||||| | | | ||||||||| |||||||||||||||||||||||| ||||| | ||| |||||||| ||| ||||||  ||||||     
T  46302825 ctctagccaacaacataaattacgcataacataa-cccactaacacacatgattccaacttataatttaaaggtactcaagtaattgctgccttattaaa 46302923  T
Q  218 aactact 224  Q
    |||||||    
T  46302924 aactact 46302930  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 46306664 - 46306702
Alignment:
Q  152 aacccactaacacacatgattccaacctataaatgaaag 190  Q
    |||||||||||||||||||||||||||||||||||||||    
T  46306664 aacccactaacacacatgattccaacctataaatgaaag 46306702  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 46302648 - 46302699
Alignment:
Q  19 attagaataattgggatgcaaatcataatctagtttatattatagaagatta 70  Q
    |||||||||| ||||||| |||||||||| |||||||||||| |||||||||    
T  46302648 attagaataactgggatggaaatcataatatagtttatattacagaagatta 46302699  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 46028524 - 46028452
Alignment:
Q  19 attagaataattgggatgcaaatcataatctagtttatattatagaagattactgaaaacaaacatgcagaaag 92  Q
    ||||||||||||||||||||||  ||||||||| |||||||| ||||  ||| ||| |||||||||||| ||||    
T  46028524 attagaataattgggatgcaaactataatctag-ttatattacagaaacttagtgataacaaacatgcataaag 46028452  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 46260048 - 46260120
Alignment:
Q  19 attagaataattgggatgcaaatcataatctagtttatattatagaagattactgaaaacaaacatgcagaaag 92  Q
    ||||||||||||||||||||||  ||||||||| |||||||| ||||  ||| ||| |||||||||||| ||||    
T  46260048 attagaataattgggatgcaaactataatctag-ttatattacagaaacttagtgataacaaacatgcataaag 46260120  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 46302729 - 46302806
Alignment:
Q  19 attagaataattgggatgcaaatcataatctagt---ttatattatagaagattactgaa-aacaaacatgcagaaag 92  Q
    |||| ||||||| |||||||||||||||||||||   |||||||| ||||||||| | || ||| |||||||||||||    
T  46302729 attaaaataattaggatgcaaatcataatctagtttattatattacagaagattattaaataaccaacatgcagaaag 46302806  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 4524663 - 4524720
Alignment:
Q  156 cactaacacacatgattccaacctataaatgaaagtactcaattaactgctgctatat 213  Q
    |||||||||||||||||||||||||||| ||||||||||  | |||||||| ||||||    
T  4524663 cactaacacacatgattccaacctataattgaaagtacttcagtaactgctcctatat 4524720  T

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