View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4978-Insertion-4 (Length: 846)
Name: NF4978-Insertion-4
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978-Insertion-4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 761; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 761; E-Value: 0
Query Start/End: Original strand, 7 - 846
Target Start/End: Original strand, 12559038 - 12559875
Alignment:
| Q |
7 |
aagtgtaataagcaactcaaacaccaccatgctccaaagtgatgatgagttggatcttcgacgagggccatggaccgtcgatgaagatcttgctctcatc |
106 |
Q |
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| T |
12559038 |
aagtgtaataagcaactcaaacagcaccatgctccaaagtgatgatgagttggatcttcgacgagggccatggaccgtcgatgaagatcttgctctcatc |
12559137 |
T |
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| Q |
107 |
aattacattgcaaatcatggtgaaggtcgatggaatactcttgctcgttcagctggtaattcacaactcnnnnnnnnncttctactttttatggaagaat |
206 |
Q |
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| T |
12559138 |
aattacattgcaaatcatggtgaaggtcgatggaatactcttgctcgttccgctggtaattcacaact----ttttttcttctgctttttatggaagaat |
12559233 |
T |
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| Q |
207 |
aataagaactatatat--tatattatggaccactatagctgtttcatgattgcaattgttgatgggaaatcatatacttccactattttcttcaacgcta |
304 |
Q |
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| T |
12559234 |
aataagaactatatatattatattatggaccactatagctgtttcatgattgcaattgttgatgggaaatcatatacttccactattttcttcaacgcta |
12559333 |
T |
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| Q |
305 |
tgcttgatttctagctagttaatttctataattatggtgtgaaagctccttcacttctcgtcttgtttcatcacaccaatcaattttttggaaaaagcca |
404 |
Q |
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| T |
12559334 |
tgcttgatttctagctagttaatttctataattatggtgtgaaagctccttcacttctcgtcttgtttcatcacaccaatcaattttttggaaaaagcca |
12559433 |
T |
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| Q |
405 |
aagtttgcggttttt-catatgaagagcaccatatgatagtgattatattagccaggactttaatacaaggcatatacttctgtgtgtggtggggcataa |
503 |
Q |
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| T |
12559434 |
aagtttgcggttttttcttatgaagagcaccatatgatagtgattatgttagccaggactttaatacaaggcatatacttctgtgtgtggtggggcataa |
12559533 |
T |
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| Q |
504 |
acaaattaattatggaaatgaaataccatataactataggtggcccatatataattgcttggctgcatcacgtttatgaaaatagaaaagaataatgaat |
603 |
Q |
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| T |
12559534 |
acaaattaattatggaaatgaaataccatataactataggtggcccatatataattgcttggctgcatcacgtttatgaaaatagaaaagaataatgaat |
12559633 |
T |
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| Q |
604 |
ttgatactacaacgcaatatcatatatttcccgtattaattaaaagtacaaaaaatttgctctttatttttacttgatttgtttttacttgcattcttga |
703 |
Q |
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| T |
12559634 |
ttgatactacaacgcaatatcatatatttcccgtattaattaaaagtacaaaaaatttgctctttatttttacttgatttgttttt-cttgcattcttga |
12559732 |
T |
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| Q |
704 |
aaactttactaattgaagaaatttggttttttgttataggactcaagcgaactggcaagagttgtagattgagatggttgaattatcttcgtccagatgt |
803 |
Q |
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| T |
12559733 |
aaactttactaattgaagaaatttggttttttgttataggactcaagcgaactggcaagagttgtagattgagatggttgaattatcttcgtccagatgt |
12559832 |
T |
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| Q |
804 |
tcgtcgtggcaacatcacacttgaagaacaacttcttattctt |
846 |
Q |
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| T |
12559833 |
tcgtcgtggcaacatcacacttgaagaacaacttcttattctt |
12559875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 740 - 837
Target Start/End: Complemental strand, 50777979 - 50777882
Alignment:
| Q |
740 |
taggactcaagcgaactggcaagagttgtagattgagatggttgaattatcttcgtccagatgttcgtcgtggcaacatcacacttgaagaacaactt |
837 |
Q |
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|||| ||||||||||| || |||||||| |||||||| | | | |||||||| ||||||||||| | ||||| || ||||||||||||||||||||| |
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| T |
50777979 |
taggtctcaagcgaacgggaaagagttgcagattgaggttgcttaattatctccgtccagatgtcagacgtggaaatatcacacttgaagaacaactt |
50777882 |
T |
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