View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4978-Insertion-5 (Length: 813)

Name: NF4978-Insertion-5
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4978-Insertion-5
NF4978-Insertion-5
[»] chr2 (9 HSPs)
chr2 (8-410)||(17109853-17110266)
chr2 (409-813)||(17110288-17110690)
chr2 (10-223)||(17030395-17030608)
chr2 (10-223)||(17048733-17048946)
chr2 (16-223)||(16978529-16978736)
chr2 (554-638)||(17126147-17126230)
chr2 (664-813)||(16980058-16980209)
chr2 (664-813)||(17031930-17032081)
chr2 (664-747)||(17050269-17050352)
[»] chr5 (1 HSPs)
chr5 (541-616)||(35052192-35052265)


Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 8 - 410
Target Start/End: Original strand, 17109853 - 17110266
Alignment:
Q  8 gattccactctctcttaccactctaaatatcactggttgtcaaaatctcaaacaacttgactacaagggtctcgaccacctcccctctctttcatcatta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17109853 gattccactctctcttaccactctaaatatcactggttgtcaaaatctcaaacaacttgactacaagggtctcgaccacctcccctctctttcatcatta 17109952  T
Q  108 actcttaaaaactgtcccaacataaaacgtttaccgaaggagggtctacctagatccatatcaactttacagattttggggaactgtccattccttttag 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17109953 actcttaaaaactgtcccaacataaaacgtttaccgaaggagggtctacctagatccatatcaactttacagatttcggggaactgtccattccttttag 17110052  T
Q  208 aaagatgcaagaaaccttatggaa-----------aggattgcgcatattcaatgtataatgattgacgatcctgagagggaccaacagtcatagtgccc 296  Q
    ||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17110053 aaagatgcaagaaaccttatggaaaggattgcgagaggattgcgcatattcaatgtataatgattgacgatcctgagagggaccaacagtcatagtgccc 17110152  T
Q  297 aacaattactcaggtacctactatttacatgttttcttttggtatatctcatatcaagtggtgcagatttatattcaaatagtatttacttgaactggac 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17110153 aacaattactcaggtacctactatttacatgttttcttttggtatatctcatatcaagtggtgcagatttatattcaaatagtatttacttgaactggac 17110252  T
Q  397 ccactttaaaatga 410  Q
    ||||||||||||||    
T  17110253 ccactttaaaatga 17110266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 409 - 813
Target Start/End: Original strand, 17110288 - 17110690
Alignment:
Q  409 gatcagtgggatttatgttgtaatctgaaatgcagtgtttaaatacaaatttgtaccctgtaaatcccaagtgggtaataatataaatcaatacagttgg 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17110288 gatcagtgggatttatgttgtaatctgaaatgcagtgtttaaatacaaatttgtaccctgtaaatcctaagtgggtaataatataaatcaatacagttgg 17110387  T
Q  509 agacgtacacacaattggccgagcttaattagttaccaaacttcgtgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctg 608  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17110388 agacgtacacgcaattggccgagcttaattagttaccaaacgtcgtgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctg 17110487  T
Q  609 ttctaacactatctgatctgtgtttgctgatctctacttatcgtaacacaaaagtttaatattttcaaatattcatttaacgttgaatatcactcgtatt 708  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||| |||||||||||    
T  17110488 ttctaacactatctgatctgtgtttgctgatctctacttatcgtaacac--aagtttaatattttcaaatattcatttaaccttgaatttcactcgtatt 17110585  T
Q  709 gctagggatgggtatggagctatcaggattctggaacttggtttcttgcatcgtcaaaacgtgtacaatataaaggtaatgtgttttgttattaaacatg 808  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17110586 gctagggatgggtatggagctatcaggattctggaacttggtttcttgcattgtcaaaaagtgtacaatataaaggtaatgtgttttgttattaaacatg 17110685  T
Q  809 aatga 813  Q
    |||||    
T  17110686 aatga 17110690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 17030395 - 17030608
Alignment:
Q  10 ttccactctctcttaccactctaaatatcactggttgtcaaaatctcaaacaacttgactacaagggtctcgaccacctcccctctctttcatcattaac 109  Q
    |||| |||||||||||   ||||||||||  |||||||| |||||||||||||||||||||||||||||| ||  |||| |||||||||  | |||| |     
T  17030395 ttcccctctctcttacttatctaaatatccgtggttgtcgaaatctcaaacaacttgactacaagggtcttgagaaccttccctctcttagaacattgag 17030494  T
Q  110 tcttaaaaactgtcccaacataaaacgtttaccgaaggagggtctacctagatccatatcaactttacagattttggggaactgtccattccttttagaa 209  Q
    ||| || || |||||||||||  || | || || ||||||||||| |||| |||||| |||||| |||| || |||||||| ||| || | |||  | ||    
T  17030495 tctaaataattgtcccaacatccaatgcttgccaaaggagggtcttcctaaatccatttcaactctacaaatattggggaattgttcactgcttaaacaa 17030594  T
Q  210 agatgcaagaaacc 223  Q
     |||||||||||||    
T  17030595 cgatgcaagaaacc 17030608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 17048733 - 17048946
Alignment:
Q  10 ttccactctctcttaccactctaaatatcactggttgtcaaaatctcaaacaacttgactacaagggtctcgaccacctcccctctctttcatcattaac 109  Q
    |||| |||||||||||   ||||||||||  |||||||| |||||||||||||||||||||||||||||| ||  |||| |||||||||  | |||| |     
T  17048733 ttcccctctctcttacttatctaaatatccgtggttgtcgaaatctcaaacaacttgactacaagggtcttgagaaccttccctctcttagaacattgag 17048832  T
Q  110 tcttaaaaactgtcccaacataaaacgtttaccgaaggagggtctacctagatccatatcaactttacagattttggggaactgtccattccttttagaa 209  Q
    ||| || || |||||||||||  || | || || ||||||||||| |||| |||||| |||||| |||| || |||||||| ||| || | |||  | ||    
T  17048833 tctaaataattgtcccaacatccaatgcttgccaaaggagggtcttcctaaatccatttcaactctacaaatattggggaattgttcactgcttaaacaa 17048932  T
Q  210 agatgcaagaaacc 223  Q
     |||||||||||||    
T  17048933 cgatgcaagaaacc 17048946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 16978529 - 16978736
Alignment:
Q  16 tctctcttaccactctaaatatcactggttgtcaaaatctcaaacaacttgactacaagggtctcgaccacctcccctctctttcatcattaactcttaa 115  Q
    ||||||||||   |||||||||   |||||||| |||||||||||||||||||||||||||||| ||  |||| |||||||||  | |||| | ||| ||    
T  16978529 tctctcttacttatctaaatatttgtggttgtcgaaatctcaaacaacttgactacaagggtcttgagaaccttccctctcttagaacattgagtctaaa 16978628  T
Q  116 aaactgtcccaacataaaacgtttaccgaaggagggtctacctagatccatatcaactttacagattttggggaactgtccattccttttagaaagatgc 215  Q
     || |||||||||||  || | || || ||||||||||| |||| |||||| |||||| |||| || |||||||| ||| || | |||  | || |||||    
T  16978629 taattgtcccaacatccaatgcttgccaaaggagggtctgcctaaatccatttcaactctacaaatattggggaattgttcactgcttaaacaacgatgc 16978728  T
Q  216 aagaaacc 223  Q
    ||||||||    
T  16978729 aagaaacc 16978736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 554 - 638
Target Start/End: Original strand, 17126147 - 17126230
Alignment:
Q  554 tgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctgttctaacactatctgatctgtgtttgctga 638  Q
    |||||||||||||||||||||||   || |||| ||||||| ||||| |||| ||||||||||||||||||||||| ||||||||    
T  17126147 tgtgttcattgtttgcgttttttga-atttttactcttttgaactagggttgatgttctaacactatctgatctgtatttgctga 17126230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 664 - 813
Target Start/End: Original strand, 16980058 - 16980209
Alignment:
Q  664 ttaatattttcaaatattcatttaacgttgaatatcactcgtattgctagggatgggtatggagctatcaggattctggaacttggtttcttgcatcgt- 762  Q
    |||||||||||||||||| ||||||| |||||| ||| | |||  ||||| ||||||||| |||||||| ||||||| ||||||  |||||| |||  |     
T  16980058 ttaatattttcaaatattgatttaactttgaatttcatttgtacagctagtgatgggtattgagctatctggattctagaacttaatttcttacatacta 16980157  T
Q  763 -caaaacgtgtacaatataaaggtaatgtgttttgttattaaacatgaatga 813  Q
      ||||  | ||| |||||||| |||| |||||| ||||||| |||||||||    
T  16980158 aaaaaaaatatactatataaagataatttgttttattattaatcatgaatga 16980209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 664 - 813
Target Start/End: Original strand, 17031930 - 17032081
Alignment:
Q  664 ttaatattttcaaatattcatttaacgttgaatatcactcgtattgctagggatgggtatggagctatcaggattctggaacttggtttcttgcatcgt- 762  Q
    |||||||||||||||||| ||||||| |||||| ||| | |||  ||||| ||||||||| |||||||| ||||||| ||||||  |||||| |||  |     
T  17031930 ttaatattttcaaatattgatttaactttgaatttcatttgtacagctagtgatgggtattgagctatctggattctagaacttaatttcttacatacta 17032029  T
Q  763 -caaaacgtgtacaatataaaggtaatgtgttttgttattaaacatgaatga 813  Q
      ||||  | ||| |||||||| |||| |||||| ||||||| |||||||||    
T  17032030 aaaaaaaatatactatataaagataatttgttttattattaatcatgaatga 17032081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 664 - 747
Target Start/End: Original strand, 17050269 - 17050352
Alignment:
Q  664 ttaatattttcaaatattcatttaacgttgaatatcactcgtattgctagggatgggtatggagctatcaggattctggaactt 747  Q
    |||||||||||||||||| ||||||| |||||| ||| | |||  ||||| ||||||||| |||||||| ||||||| ||||||    
T  17050269 ttaatattttcaaatattgatttaactttgaatttcatttgtacagctagtgatgggtattgagctatctggattctagaactt 17050352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 616
Target Start/End: Original strand, 35052192 - 35052265
Alignment:
Q  541 ttaccaaacttcgtgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctgttctaaca 616  Q
    |||||||||  ||||||||||||||||||| |||||| |||||||| ||||||| ||  || ||||||||||||||    
T  35052192 ttaccaaacaacgtgtgttcattgtttgcg-tttttcgtatctttattcttttgaaccgga-ttgctgttctaaca 35052265  T

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