View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4978-Insertion-6 (Length: 742)
Name: NF4978-Insertion-6
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978-Insertion-6 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 691; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 691; E-Value: 0
Query Start/End: Original strand, 8 - 742
Target Start/End: Original strand, 32205877 - 32206605
Alignment:
| Q |
8 |
gtacttaaggctaactatctggtagtctactaagaactgagtgttctggtttatgttcgcattcgaagtctagatgaacaaacgctcgttcaacttccgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32205877 |
gtacttaaggctaactatctggtagtctactaagaactgagtgttctggtttatgttcgcattcgaagtctagatgaacaaacgctcgctcaacttccgg |
32205976 |
T |
|
| Q |
108 |
aagtttctcgagatttatctgtagactttctccaatgatatgtgcttcttttaagggtaaatcctctggcagttcaatgtcaacctgttttacaattgaa |
207 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32205977 |
aagtttctcgagatttatctgcagactttctccaatgatatgtgcttcttttaagggtaaatcctctggcagttcaatgtcaacctgttttacaattgaa |
32206076 |
T |
|
| Q |
208 |
aagttatatcatatcatacataaaattgaggttaccgatttacaattttagagttagtagtactagaaagtgatttaagttttggatacatacctctaca |
307 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32206077 |
aagttatatcata-----cataaaattgaggttacagatttacaattttagagttagtagtactagaaagtgatttaagttt-ggatacatacctctacg |
32206170 |
T |
|
| Q |
308 |
aagtatagaactccaaatgagtaagcgcgaacagtatcaatgcgcttaatttgagagtgcattatgacaagatacgttagcttctgcagaagttcaggag |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32206171 |
aagtatagaactccaaatgagtaagcgcgaacagtatcaatgcgcttaatttgagagtgcattatgacaagatacgttagcttctgcagaagttcaggag |
32206270 |
T |
|
| Q |
408 |
gtgcagattgtcccactagtgaaactgcataagaaattatctagcatcaatattcatacaccacataattcaagttaactgtattatcgaagaaataata |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32206271 |
gtgcagattgtcccactagtgaaactgcataagaaattatctagcatcaatattcatacaccacataattcaagttaactgtattatcgaagaaataata |
32206370 |
T |
|
| Q |
508 |
gttaatgcggcaatgaacttcgaaaatgacaattaaaaatggacagtttttctgcaaaacggacgattaaaaaaggttggagggagtagtaaatgaattc |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32206371 |
gttaatgcggcaatgaacttcgaaaatgacaattaaaaatggacagtttttctgcaaaacggacgattaaaaaaggttggagggagtagtaaatgaattc |
32206470 |
T |
|
| Q |
608 |
tacctgcattttccataacagtaccagaccaatttgaaatagtgtaaattgcaagtaaaatagcaccaatagggtcaatccaccagtaaaatttatcacc |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32206471 |
tacctgcattttccataacagtaccagaccaatttgaaatagtgtaaattgcaagtaaaatagcaccaatagggtcaatccaccagtaaaatttatcacc |
32206570 |
T |
|
| Q |
708 |
aagaacagctgcaattaatccaaccacatttgtta |
742 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
32206571 |
aagaacagctgcaattaatccaaccacatttgtta |
32206605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 9e-32; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 608 - 742
Target Start/End: Original strand, 28295391 - 28295525
Alignment:
| Q |
608 |
tacctgcattttccataacagtaccagaccaatttgaaatagtgtaaattgcaagtaaaatagcaccaatagggtcaatccaccagtaaaatttatcacc |
707 |
Q |
| |
|
|||| ||||| ||||| ||||| | |||||||||||| || |||||||||||||| |||||||| || || || |||||||||||||||||||||||||| |
|
|
| T |
28295391 |
taccggcattctccatgacagtgcgagaccaatttgagatggtgtaaattgcaagcaaaatagctcctatcggatcaatccaccagtaaaatttatcacc |
28295490 |
T |
|
| Q |
708 |
aagaacagctgcaattaatccaaccacatttgtta |
742 |
Q |
| |
|
||||| ||| |||| ||||||||| |||||||||| |
|
|
| T |
28295491 |
aagaatagccgcaactaatccaactacatttgtta |
28295525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 28 - 194
Target Start/End: Original strand, 28294365 - 28294531
Alignment:
| Q |
28 |
ggtagtctactaagaactgagtgttctggtttatgttcgcattcgaagtctagatgaacaaacgctcgttcaacttccggaagtttctcgagatttatct |
127 |
Q |
| |
|
|||||| |||| ||||||||||| |||||||| || ||||| || |||||||||||||| || || | ||||||||| ||||||||| || ||||| | |
|
|
| T |
28294365 |
ggtagtttactgagaactgagtgctctggtttgtgatcgcactcaaagtctagatgaacgaatgccctctcaacttccaaaagtttctcaagctttattt |
28294464 |
T |
|
| Q |
128 |
gtagactttctccaatgatatgtgcttcttttaagggtaaatcctctggcagttcaatgtcaacctg |
194 |
Q |
| |
|
||| | | || |||||| ||||||||||||||| ||||| |||||||||||||||||||| ||||| |
|
|
| T |
28294465 |
gtaaagtctccccaatggcatgtgcttcttttaatggtaattcctctggcagttcaatgtctacctg |
28294531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 298 - 434
Target Start/End: Original strand, 28294999 - 28295135
Alignment:
| Q |
298 |
tacctctacaaagtatagaactccaaatgagtaagcgcgaacagtatcaatgcgcttaatttgagagtgcattatgacaagatacgttagcttctgcaga |
397 |
Q |
| |
|
|||||| ||||| |||| ||| ||||||| || ||||| ||||| ||||| || | |||| | |||| |||| || ||||| ||||||||||||| | |
|
|
| T |
28294999 |
tacctccacaaaatataaaacaccaaatgtatatgcgcggacagtgtcaatacgttgaattccggggtgccttataacgagatatgttagcttctgcaaa |
28295098 |
T |
|
| Q |
398 |
agttcaggaggtgcagattgtcccactagtgaaactg |
434 |
Q |
| |
|
| |||||||||||||||||||||||| | |||||||| |
|
|
| T |
28295099 |
acttcaggaggtgcagattgtcccaccaatgaaactg |
28295135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 4918494 - 4918593
Alignment:
| Q |
81 |
atgaacaaacgctcgttcaacttccggaagtttctcgagatttatctgtagactttctccaatgatatgtgcttcttttaagggtaaatcctctggcagt |
180 |
Q |
| |
|
||||||||| || || |||||||| ||||||||||| || ||||| | ||| | ||||||||| |||||||||||||||| ||||||| ||||||||| |
|
|
| T |
4918494 |
atgaacaaatgcacgctcaacttctggaagtttctcaagttttattt--agaatatctccaatgtcatgtgcttcttttaagtgtaaatcttctggcagt |
4918591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 633 - 671
Target Start/End: Original strand, 4918758 - 4918796
Alignment:
| Q |
633 |
agaccaatttgaaatagtgtaaattgcaagtaaaatagc |
671 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4918758 |
agaccaatttgaaatagtgtaaattgcaagcaaaatagc |
4918796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University