View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4978-Insertion-7 (Length: 718)
Name: NF4978-Insertion-7
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978-Insertion-7 |
 | |
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| [»] chr1 (9 HSPs) |
| |
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| [»] chr8 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 458 - 718
Target Start/End: Complemental strand, 42287387 - 42287127
Alignment:
| Q |
458 |
ttcaataccaaaccatataagtataaccctaacatttggcaaaagtgtagcatatattatgtatatagagtgatgaattcatatttatgaaatataatta |
557 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42287387 |
ttcaataccaaaccatataagtataaccctaacatttggcaaaagtgtagcatatattatgtatatagagtgatgaattcatatttatgaaatataatta |
42287288 |
T |
|
| Q |
558 |
gactaacatcgatgtgaagatataaatataaagatgatgtttgttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtctt |
657 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42287287 |
gactaacatcgatgtgaagatataaatataaagatgatgtttgttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtctt |
42287188 |
T |
|
| Q |
658 |
agaatgtgctttccaatcagattgaacagcatatttctttgagcatttttcacatttccac |
718 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42287187 |
agaatgtgctttccagtcagattgaacagcatatttctttgagcatttttcacatttccac |
42287127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 352
Target Start/End: Complemental strand, 42287825 - 42287479
Alignment:
| Q |
7 |
acagagaaagggtgaaagctcttgttcacnnnnnnnngggataagaacataaaagagactgt-gttcaaatttaacctttgtgtgtttttacttattgta |
105 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42287825 |
acagagaaagggtgaaagctcttgttcacttttttttgggataagaacataaaagagactgttgttcaaatttaacctttgtgtgtttttacttattgta |
42287726 |
T |
|
| Q |
106 |
aaaaagttcaactnnnnnnnnnnnnnnnnnnncacacacctttttatatgtaaaaggttccttagtaaagaagtttaaagagtacttcaatttatataaa |
205 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42287725 |
aaaaaattcaacttattatatttatatatatacacacacctttttatatgtaaaaggttccttagtaaagaagtttaaagagtacttcaatttagataaa |
42287626 |
T |
|
| Q |
206 |
ttagagctcaatacgaagaggaaagaaagagagcgatatataaggagtctatgaatttgatctatggtttggttggattttacttgctttcttgcaaaac |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42287625 |
ttagagctcaatacgaagaggaaagaaagagaacgatatataaggagtctatgagtttgatctacggtttggttggattttacttgctttcttgcaaaac |
42287526 |
T |
|
| Q |
306 |
ttcagattgttatgacttatgaccattttccttgcaatcgaatgatg |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42287525 |
ttcagattgttatgacttatgaccattttccttgcaattgaatgatg |
42287479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 596 - 718
Target Start/End: Original strand, 12804505 - 12804627
Alignment:
| Q |
596 |
gtttgttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttct |
695 |
Q |
| |
|
||||| ||||| |||||||| |||||||| ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
12804505 |
gtttggtaccttgagaagagagtgccacagtcacatctatactccctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttct |
12804604 |
T |
|
| Q |
696 |
ttgagcatttttcacatttccac |
718 |
Q |
| |
|
| || || ||||||||||||||| |
|
|
| T |
12804605 |
tagaacacttttcacatttccac |
12804627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 599 - 717
Target Start/End: Original strand, 50788816 - 50788934
Alignment:
| Q |
599 |
tgttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttg |
698 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||| | |
|
|
| T |
50788816 |
tgttacctggagaagagagtgccacagtcacacctatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcatacttcttag |
50788915 |
T |
|
| Q |
699 |
agcatttttcacatttcca |
717 |
Q |
| |
|
|||| || ||||| ||||| |
|
|
| T |
50788916 |
agcacttatcacacttcca |
50788934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 594 - 717
Target Start/End: Complemental strand, 12775071 - 12774948
Alignment:
| Q |
594 |
atgtttgttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatattt |
693 |
Q |
| |
|
|||||| |||||| |||||||| |||||||| ||||||||||| || ||||||||||||| |||||||| |||||||||||||||||||||||||| || |
|
|
| T |
12775071 |
atgtttattacctggagaagagagtgccacagtcacatctatactccttagtaccacaagttttagaatgagctttccaatcagattgaacagcatactt |
12774972 |
T |
|
| Q |
694 |
ctttgagcatttttcacatttcca |
717 |
Q |
| |
|
||| || || |||||||| ||||| |
|
|
| T |
12774971 |
cttagaacacttttcacacttcca |
12774948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 602 - 718
Target Start/End: Original strand, 28496106 - 28496222
Alignment:
| Q |
602 |
tacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgagc |
701 |
Q |
| |
|
||||| ||||||||||||||||| |||||| | |||||||| |||||||| || || | ||| ||||||||||||||||| || |||||||| || || | |
|
|
| T |
28496106 |
taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac |
28496205 |
T |
|
| Q |
702 |
atttttcacatttccac |
718 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
28496206 |
atttttcacatttccac |
28496222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 614 - 717
Target Start/End: Original strand, 31644070 - 31644173
Alignment:
| Q |
614 |
agggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgagcatttttcacatt |
713 |
Q |
| |
|
||||| |||||||||||| ||||||||| ||||||||| || ||||| || |||||||||||||| ||||||||||| |||||||||| || ||||||| |
|
|
| T |
31644070 |
agggtaccacaatcacatttatattctcgagtaccacaggttttagagtgagctttccaatcagaatgaacagcatagatctttgagcacttatcacatt |
31644169 |
T |
|
| Q |
714 |
tcca |
717 |
Q |
| |
|
|||| |
|
|
| T |
31644170 |
tcca |
31644173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 602 - 718
Target Start/End: Complemental strand, 36989466 - 36989350
Alignment:
| Q |
602 |
tacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgagc |
701 |
Q |
| |
|
||||| || |||| ||| ||||| |||||| | ||||| || |||||||| | || ||||| |||||||||||||||||||||||||||||||| || | |
|
|
| T |
36989466 |
tacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaac |
36989367 |
T |
|
| Q |
702 |
atttttcacatttccac |
718 |
Q |
| |
|
| || |||||||||||| |
|
|
| T |
36989366 |
acttatcacatttccac |
36989350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 601 - 691
Target Start/End: Complemental strand, 4160504 - 4160414
Alignment:
| Q |
601 |
ttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatat |
691 |
Q |
| |
|
|||||| ||||||||||| ||||| ||||| |||| ||| |||| |||||| | || ||||| ||||||||||| || ||||| |||||| |
|
|
| T |
4160504 |
ttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatat |
4160414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 6e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 600 - 718
Target Start/End: Original strand, 5788721 - 5788839
Alignment:
| Q |
600 |
gttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttga |
699 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5788721 |
gttaccttgagaagagggttccacagtcacatctatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttga |
5788820 |
T |
|
| Q |
700 |
gcatttttcacatttccac |
718 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
5788821 |
acacttttcacatttccac |
5788839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 620 - 718
Target Start/End: Complemental strand, 33186843 - 33186745
Alignment:
| Q |
620 |
ccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgagcatttttcacatttccac |
718 |
Q |
| |
|
|||||||||||| |||| ||||||| ||||||| ||||| || |||||||||||||||||||||||||||||||| || ||||| |||||||||||| |
|
|
| T |
33186843 |
ccacaatcacatttatactctctagaaccacaaactttagagtgagctttccaatcagattgaacagcatatttcttagaacatttctcacatttccac |
33186745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 617 - 690
Target Start/End: Original strand, 38895872 - 38895945
Alignment:
| Q |
617 |
gtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcata |
690 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |
|
|
| T |
38895872 |
gtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcata |
38895945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 602 - 718
Target Start/End: Complemental strand, 40040915 - 40040799
Alignment:
| Q |
602 |
tacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgagc |
701 |
Q |
| |
|
||||| ||||| || ||||||||||||||||| || ||| |||| |||||| ||||| ||| || ||||||||||||||||| ||||||||||| || | |
|
|
| T |
40040915 |
tacctggagaatagtgtgccacaatcacatctgtactctttagtgccacaaatcttactatgagccttccaatcagattgaactgcatatttcttagaac |
40040816 |
T |
|
| Q |
702 |
atttttcacatttccac |
718 |
Q |
| |
|
| || ||||| |||||| |
|
|
| T |
40040815 |
acttatcacacttccac |
40040799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 602 - 718
Target Start/End: Complemental strand, 42898424 - 42898308
Alignment:
| Q |
602 |
tacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgagc |
701 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||| |||||||| || ||||| || || || || |||||||| || |||||||| ||||| ||||| |||| |
|
|
| T |
42898424 |
taccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagc |
42898325 |
T |
|
| Q |
702 |
atttttcacatttccac |
718 |
Q |
| |
|
| || |||||||||||| |
|
|
| T |
42898324 |
acttgtcacatttccac |
42898308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 601 - 717
Target Start/End: Complemental strand, 40749517 - 40749401
Alignment:
| Q |
601 |
ttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgag |
700 |
Q |
| |
|
|||||| |||||||| || ||||||||||| |||||||||||||||||||||| |||| || ||||||||||||||||| || ||||||||||| || |
|
|
| T |
40749517 |
ttaccttgagaagagtgtaccacaatcacacttatattctctagtaccacaagttttagtgtgagctttccaatcagattggactgcatatttcttggaa |
40749418 |
T |
|
| Q |
701 |
catttttcacatttcca |
717 |
Q |
| |
|
|| || ||||| ||||| |
|
|
| T |
40749417 |
cacttatcacacttcca |
40749401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 602 - 717
Target Start/End: Original strand, 44150800 - 44150915
Alignment:
| Q |
602 |
tacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgagc |
701 |
Q |
| |
|
|||||||| || | ||| |||||||||||| | ||||| |||||||||||||| || || || |||||||| ||||||||||||||| | || |||| |
|
|
| T |
44150800 |
tacctagaaaatatggttccacaatcacatttgtattccctagtaccacaagttttctggtgagccttccaatctgattgaacagcatatcttttagagc |
44150899 |
T |
|
| Q |
702 |
atttttcacatttcca |
717 |
Q |
| |
|
| || ||||||||||| |
|
|
| T |
44150900 |
acttgtcacatttcca |
44150915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 617 - 718
Target Start/End: Original strand, 22085521 - 22085622
Alignment:
| Q |
617 |
gtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgagcatttttcacatttcc |
716 |
Q |
| |
|
||||||||||||||| | || |||||||| |||||| |||| ||| |||||||||||||||||||| ||||||||||| || || |||||||| |||| |
|
|
| T |
22085521 |
gtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaacacttttcacacttcc |
22085620 |
T |
|
| Q |
717 |
ac |
718 |
Q |
| |
|
|| |
|
|
| T |
22085621 |
ac |
22085622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 620 - 690
Target Start/End: Original strand, 30518166 - 30518236
Alignment:
| Q |
620 |
ccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcata |
690 |
Q |
| |
|
||||| |||||| | ||||||||||||||||| || || || || ||||||||||| || ||||||||||| |
|
|
| T |
30518166 |
ccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcata |
30518236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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