View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4978-Insertion-8 (Length: 648)

Name: NF4978-Insertion-8
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4978-Insertion-8
NF4978-Insertion-8
[»] chr8 (9 HSPs)
chr8 (8-519)||(40825370-40825870)
chr8 (8-228)||(40817084-40817304)
chr8 (8-228)||(40806828-40807048)
chr8 (8-240)||(40811913-40812145)
chr8 (8-241)||(40805086-40805326)
chr8 (587-648)||(13802837-13802898)
chr8 (587-639)||(3879634-3879686)
chr8 (370-433)||(40811744-40811807)
chr8 (599-640)||(531554-531595)
[»] scaffold0415 (1 HSPs)
scaffold0415 (8-228)||(15060-15280)
[»] scaffold0559 (1 HSPs)
scaffold0559 (8-228)||(7581-7803)
[»] chr3 (7 HSPs)
chr3 (587-648)||(29703694-29703755)
chr3 (587-640)||(36950324-36950377)
chr3 (587-640)||(53282151-53282204)
chr3 (587-638)||(20104180-20104231)
chr3 (587-648)||(29833274-29833335)
chr3 (599-640)||(39833396-39833437)
chr3 (587-639)||(33216821-33216873)
[»] chr5 (3 HSPs)
chr5 (590-648)||(39884556-39884614)
chr5 (587-639)||(31482235-31482287)
chr5 (599-640)||(24788489-24788530)
[»] chr4 (6 HSPs)
chr4 (587-648)||(15531369-15531430)
chr4 (587-648)||(42069192-42069253)
chr4 (587-640)||(47031613-47031666)
chr4 (599-640)||(20133280-20133321)
chr4 (587-640)||(45989764-45989817)
chr4 (599-640)||(55919552-55919593)
[»] chr7 (4 HSPs)
chr7 (587-640)||(34093976-34094029)
chr7 (599-648)||(29243250-29243299)
chr7 (587-640)||(6442495-6442548)
chr7 (599-640)||(45972293-45972334)
[»] chr2 (3 HSPs)
chr2 (589-646)||(33755230-33755287)
chr2 (587-640)||(7089082-7089135)
chr2 (599-640)||(15330604-15330645)
[»] scaffold0166 (1 HSPs)
scaffold0166 (599-640)||(30872-30913)
[»] chr1 (1 HSPs)
chr1 (599-640)||(12981391-12981432)
[»] chr6 (1 HSPs)
chr6 (612-648)||(33694805-33694841)


Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 8 - 519
Target Start/End: Complemental strand, 40825870 - 40825370
Alignment:
Q  8 aaagtggggtcccaaaatatgtgcatagaaagaatcagtataggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaa 107  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40825870 aaagtgggatcccaaaatatgtgcatagaaagaatcagcataggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaa 40825771  T
Q  108 aacaaaaacagtcttcatccggggttgttctgagtaatgatgttctaactttggatttggcggctggcgtggatcattcccttataattgctctgatcac 207  Q
    | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40825770 agcaaaaacagtcttcatcaggggttgttctgagtaatgatgttctaactttggatttggcggctggcgtggatcattcccttataatcgctctgatcac 40825671  T
Q  208 ggtctatggtttgatatgcggcttaatgtagatattcaattcacatatgacagatattaggcacaattcaattcatttgagagccctcatttgggaaact 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40825670 ggtctatggtttgatatgcggcttaatgtagatattcaattcacatatgacagatattaggcacaattcaattcatttgagagccctcatttgggaaact 40825571  T
Q  308 tttcgctcttgtaannnnnnnnnnnnnnnnnnnnnnctgacacaatgtctttgtaacttatctaaagttttgtgattagtatttggctcagtttgtgtaa 407  Q
    ||| ||||||||||                      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40825570 ttttgctcttgtaa-tttttttttttttttttttttctgacacaatgtctttgtaacttatctaaagttttgtgattagtatttggctcagtttgtgtaa 40825472  T
Q  408 aaagatcatgaacttcatcaagatctataactagagacatgtatatgtgcacatatattgttcacagaaagaagttactagaatttattgtatatttgat 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||    
T  40825471 aaagatcatgaacttcatcaagatctataactagagacatgtatatgtgcacatatattgt----------aagttactagaatttattgtatatttgat 40825382  T
Q  508 ctttggtatgac 519  Q
    ||||||||||||    
T  40825381 ctttggtatgac 40825370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 40817304 - 40817084
Alignment:
Q  8 aaagtggggtcccaaaatatgtgcatagaaagaatcagtataggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaa 107  Q
    ||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40817304 aaagtagggtcccaaaatttgtgcatagaaagaatcagtacaggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaa 40817205  T
Q  108 aacaaaaacagtcttcatccggggttgttctgagtaatgatgttctaactttggatttggcggctggcgtggatcattcccttataattgctctgatcac 207  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   |||||||||||||||||| ||| |||| ||    
T  40817204 agcaaaaacagtcttcatccggggttgttctgagtaatgatgttctaactttggatttggctgctggaacggatcattcccttataatggctttgattac 40817105  T
Q  208 ggtctatggtttgatatgcgg 228  Q
    |||||| || |||||||||||    
T  40817104 ggtctacggattgatatgcgg 40817084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 40807048 - 40806828
Alignment:
Q  8 aaagtggggtcccaaaatatgtgcatagaaagaatcagtataggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaa 107  Q
    |||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||    
T  40807048 aaagtggggtgccaaaatttgtgtatagaaagaatcagtataggaaaatcatttgcttttaggattataaacaaagatggagaaatcattgcagaggcaa 40806949  T
Q  108 aacaaaaacagtcttcatccggggttgttctgagtaatgatgttctaactttggatttggcggctggcgtggatcattcccttataattgctctgatcac 207  Q
    | ||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||| |||||||| ||| |||| ||    
T  40806948 agcaaaaactgtcgtcatccggggttgttctgagtaatgatattctaactttggatttggcggctggcacggatcattctcttataatggctttgataac 40806849  T
Q  208 ggtctatggtttgatatgcgg 228  Q
    |||||| || |||||||||||    
T  40806848 ggtctacggattgatatgcgg 40806828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 40812145 - 40811913
Alignment:
Q  8 aaagtggggtcccaaaatatgtgcatagaaagaatcagtataggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaa 107  Q
    |||||||||  ||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||    
T  40812145 aaagtggggagccaaaatttgtgtatagaaagaatcagtataggaaaatcatttgcttttcggatagtaaacaaagatggagaaatcattgctgaggcaa 40812046  T
Q  108 aacaaaaacagtcttcatccggggttgttctgagtaatgatgttctaactttggatttggcggctggcgtggatcattcccttataattgctctgatcac 207  Q
    | ||||||||||| || || ||||||||||||||||| ||||||||||| |||||||||||  | |||||||||||||||||||| |  ||| |||| ||    
T  40812045 agcaaaaacagtcatcctcaggggttgttctgagtaacgatgttctaacgttggatttggccaccggcgtggatcattcccttattacggctttgataac 40811946  T
Q  208 ggtctatggtttgatatgcggcttaatgtagat 240  Q
    ||| ||||| |||||||||||||| ||||||||    
T  40811945 ggtatatggattgatatgcggcttgatgtagat 40811913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 40805326 - 40805086
Alignment:
Q  8 aaagtggggtcccaaaatatgtgcatagaaagaatcagtataggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaa 107  Q
    |||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| ||||    
T  40805326 aaagtggggtgccaaaatttatgcatagaaagaatcagtataggaaaatcatttgcttttcggatagtaaacaaagatggacaaatcattgcagatgcaa 40805227  T
Q  108 aacaaaaacagtcttcatccggggttgttctgagtaatgatgttctaactttggatttggcggctgg-------cgtggatcattcccttataattgctc 200  Q
    | ||||||||||| || || ||||||||||| ||||||||||||||||| ||||| ||||| |||||       | || ||||| |||||||||| |||     
T  40805226 agcaaaaacagtcatcgtcaggggttgttctaagtaatgatgttctaacgttggacttggccgctggaacggatcatgcatcatgcccttataatggctt 40805127  T
Q  201 tgatcacggtctatggtttgatatgcggcttaatgtagata 241  Q
    |||| ||||||||||| |  |||||||||||| ||||||||    
T  40805126 tgataacggtctatggatcaatatgcggcttattgtagata 40805086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 587 - 648
Target Start/End: Complemental strand, 13802898 - 13802837
Alignment:
Q  587 agcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatca 648  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||| | ||||||    
T  13802898 agcttctacgaagaagtcagtaaaatgactttttcggtaaagtcgtttgaatgaaccaatca 13802837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 587 - 639
Target Start/End: Complemental strand, 3879686 - 3879634
Alignment:
Q  587 agcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatg 639  Q
    |||||||||| |||||||||||||| |||||||||||| ||||||||||||||    
T  3879686 agcttctacgaagaagtcagaaaaacgactttttcggtgaagtcgtttgaatg 3879634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 433
Target Start/End: Complemental strand, 40811807 - 40811744
Alignment:
Q  370 taaagttttgtgattagtatttggctcagtttgtgtaaaaagatcatgaacttcatcaagatct 433  Q
    ||||||||||  | |||| ||| ||||||||||| |||||||||||||| |||||||| |||||    
T  40811807 taaagttttgcaactagtgtttagctcagtttgtataaaaagatcatgagcttcatcaggatct 40811744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 599 - 640
Target Start/End: Original strand, 531554 - 531595
Alignment:
Q  599 gaagtcagaaaaatgactttttcggtaaagtcgtttgaatgg 640  Q
    |||||||| |||||||||| |||||| |||||||||||||||    
T  531554 gaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgg 531595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0415 (Bit Score: 169; Significance: 3e-90; HSPs: 1)
Name: scaffold0415
Description:

Target: scaffold0415; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 15060 - 15280
Alignment:
Q  8 aaagtggggtcccaaaatatgtgcatagaaagaatcagtataggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaa 107  Q
    ||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15060 aaagtagggtcccaaaatttgtgcatagaaagaatcagtacaggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaa 15159  T
Q  108 aacaaaaacagtcttcatccggggttgttctgagtaatgatgttctaactttggatttggcggctggcgtggatcattcccttataattgctctgatcac 207  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   |||||||||||||||||| ||| |||| ||    
T  15160 agcaaaaacagtcttcatccggggttgttctgagtaatgatgttctaactttggatttggctgctggaacggatcattcccttataatggctttgattac 15259  T
Q  208 ggtctatggtttgatatgcgg 228  Q
    |||||| || |||||||||||    
T  15260 ggtctacggattgatatgcgg 15280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0559 (Bit Score: 135; Significance: 5e-70; HSPs: 1)
Name: scaffold0559
Description:

Target: scaffold0559; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 7581 - 7803
Alignment:
Q  8 aaagtggggtcccaaaatatgtgcatagaaagaatcagtataggaaaatcatttgctttt-aggatagtaaacaaaaatggagaaatcattgcagaggca 106  Q
    |||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||| |||||  |||||||| |||||||||||||||||||||||    
T  7581 aaagtggggtgccaaaatttgtgtatagaaagaatcagtataggaaaatcatttgctttttaggattataaacaaagatggagaaatcattgcagaggca 7680  T
Q  107 aaacaaaaa-cagtcttcatccggggttgttctgagtaatgatgttctaactttggatttggcggctggcgtggatcattcccttataattgctctgatc 205  Q
    || |||||| | ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||| |||||||| ||| ||||     
T  7681 aagcaaaaaactgtcgtcatccggggttgttctgagtaatgatattctaactttggatttggcggctggcacggatcattctcttataatggctttgata 7780  T
Q  206 acggtctatggtttgatatgcgg 228  Q
    |||||||| || |||||||||||    
T  7781 acggtctacggattgatatgcgg 7803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 587 - 648
Target Start/End: Complemental strand, 29703755 - 29703694
Alignment:
Q  587 agcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatca 648  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  29703755 agcttctacggagaagtcagaaaaatgactttttcggtgaagtcgtttgaatggaccaatca 29703694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 587 - 640
Target Start/End: Complemental strand, 36950377 - 36950324
Alignment:
Q  587 agcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatgg 640  Q
    |||||||| | |||||||||||||| |||||||||||| |||||||||||||||    
T  36950377 agcttctatgaagaagtcagaaaaacgactttttcggtgaagtcgtttgaatgg 36950324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 587 - 640
Target Start/End: Original strand, 53282151 - 53282204
Alignment:
Q  587 agcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatgg 640  Q
    |||||||| | |||||||||||||||||||| |||||| |||||||||||||||    
T  53282151 agcttctatgaagaagtcagaaaaatgacttcttcggtgaagtcgtttgaatgg 53282204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 587 - 638
Target Start/End: Original strand, 20104180 - 20104231
Alignment:
Q  587 agcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaat 638  Q
    |||||||||| ||||||||| ||||||||||||||||| || ||||||||||    
T  20104180 agcttctacgaagaagtcaggaaaatgactttttcggtgaaatcgtttgaat 20104231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 587 - 648
Target Start/End: Original strand, 29833274 - 29833335
Alignment:
Q  587 agcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatca 648  Q
    |||||||||| ||||||||| |||||||||| || ||| |||||||||||||| | ||||||    
T  29833274 agcttctacgaagaagtcagtaaaatgacttctttggtgaagtcgtttgaatgaaccaatca 29833335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 599 - 640
Target Start/End: Complemental strand, 39833437 - 39833396
Alignment:
Q  599 gaagtcagaaaaatgactttttcggtaaagtcgtttgaatgg 640  Q
    |||||||| |||||||||| |||||| |||||||||||||||    
T  39833437 gaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgg 39833396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 587 - 639
Target Start/End: Complemental strand, 33216873 - 33216821
Alignment:
Q  587 agcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatg 639  Q
    ||||||||||  |||||||  |||||||||| |||||| ||||||||||||||    
T  33216873 agcttctacgatgaagtcattaaaatgacttcttcggtgaagtcgtttgaatg 33216821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 590 - 648
Target Start/End: Original strand, 39884556 - 39884614
Alignment:
Q  590 ttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatca 648  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  39884556 ttctacggagaagtcagaaaaatgactttttcggtgaagtcgtttgaatggaccaatca 39884614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 587 - 639
Target Start/End: Complemental strand, 31482287 - 31482235
Alignment:
Q  587 agcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatg 639  Q
    |||||||||| ||||||||| |||||||||| |||||||||||||||||||||    
T  31482287 agcttctacgaagaagtcagtaaaatgacttcttcggtaaagtcgtttgaatg 31482235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 599 - 640
Target Start/End: Complemental strand, 24788530 - 24788489
Alignment:
Q  599 gaagtcagaaaaatgactttttcggtaaagtcgtttgaatgg 640  Q
    |||||||| |||||||||| |||||| |||||||||||||||    
T  24788530 gaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgg 24788489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 587 - 648
Target Start/End: Complemental strand, 15531430 - 15531369
Alignment:
Q  587 agcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatca 648  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||| | ||||||    
T  15531430 agcttctacggagaagtcagaaaaatgactttttcagtgaagtcgtttgaatgaaccaatca 15531369  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 587 - 648
Target Start/End: Complemental strand, 42069253 - 42069192
Alignment:
Q  587 agcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatca 648  Q
    |||||||| | ||||||||| |||||||||| ||||||  |||||||||||||| |||||||    
T  42069253 agcttctatgaagaagtcaggaaaatgacttcttcggtgcagtcgtttgaatgggtcaatca 42069192  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 587 - 640
Target Start/End: Complemental strand, 47031666 - 47031613
Alignment:
Q  587 agcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatgg 640  Q
    |||||||||| ||||||||| |||||||||| ||||||  ||||||||||||||    
T  47031666 agcttctacgaagaagtcaggaaaatgacttcttcggtgcagtcgtttgaatgg 47031613  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 599 - 640
Target Start/End: Original strand, 20133280 - 20133321
Alignment:
Q  599 gaagtcagaaaaatgactttttcggtaaagtcgtttgaatgg 640  Q
    |||||||| |||||||||| |||||| |||||||||||||||    
T  20133280 gaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgg 20133321  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 587 - 640
Target Start/End: Complemental strand, 45989817 - 45989764
Alignment:
Q  587 agcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatgg 640  Q
    |||||||||| ||||||||| |||||||||| || |||  ||||||||||||||    
T  45989817 agcttctacgaagaagtcaggaaaatgacttctttggtgcagtcgtttgaatgg 45989764  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 599 - 640
Target Start/End: Complemental strand, 55919593 - 55919552
Alignment:
Q  599 gaagtcagaaaaatgactttttcggtaaagtcgtttgaatgg 640  Q
    |||||||| |||||||||| |||||| |||||||||||||||    
T  55919593 gaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgg 55919552  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 587 - 640
Target Start/End: Original strand, 34093976 - 34094029
Alignment:
Q  587 agcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatgg 640  Q
    |||||||||| |||||||||||||||||||| ||||||  ||||||||||||||    
T  34093976 agcttctacgaagaagtcagaaaaatgacttcttcggtgcagtcgtttgaatgg 34094029  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 599 - 648
Target Start/End: Original strand, 29243250 - 29243299
Alignment:
Q  599 gaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatca 648  Q
    |||||||| |||||||||| |||||| ||||||||||||||| |||||||    
T  29243250 gaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggtcaatca 29243299  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 587 - 640
Target Start/End: Original strand, 6442495 - 6442548
Alignment:
Q  587 agcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatgg 640  Q
    |||||||||| ||||||||| |||||||||| || |||  ||||||||||||||    
T  6442495 agcttctacgaagaagtcaggaaaatgacttctttggtgcagtcgtttgaatgg 6442548  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 599 - 640
Target Start/End: Original strand, 45972293 - 45972334
Alignment:
Q  599 gaagtcagaaaaatgactttttcggtaaagtcgtttgaatgg 640  Q
    |||||||| |||||||||| |||||| |||||||||||||||    
T  45972293 gaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgg 45972334  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 589 - 646
Target Start/End: Complemental strand, 33755287 - 33755230
Alignment:
Q  589 cttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaat 646  Q
    |||||| | |||||||||||||| |||||||||||| ||||||||||||||| |||||    
T  33755287 cttctatgaagaagtcagaaaaacgactttttcggtgaagtcgtttgaatgggtcaat 33755230  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 587 - 640
Target Start/End: Original strand, 7089082 - 7089135
Alignment:
Q  587 agcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatgg 640  Q
    |||||||| | |||||||||||||| |||||||||| | |||||||||||||||    
T  7089082 agcttctatgaagaagtcagaaaaacgactttttcgatgaagtcgtttgaatgg 7089135  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 599 - 640
Target Start/End: Original strand, 15330604 - 15330645
Alignment:
Q  599 gaagtcagaaaaatgactttttcggtaaagtcgtttgaatgg 640  Q
    |||||||| |||||||||| |||||| |||||||||||||||    
T  15330604 gaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgg 15330645  T

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Target: scaffold0166 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 599 - 640
Target Start/End: Complemental strand, 30913 - 30872
Alignment:
Q  599 gaagtcagaaaaatgactttttcggtaaagtcgtttgaatgg 640  Q
    |||||||| |||||||||| |||||| |||||||||||||||    
T  30913 gaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgg 30872  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 599 - 640
Target Start/End: Original strand, 12981391 - 12981432
Alignment:
Q  599 gaagtcagaaaaatgactttttcggtaaagtcgtttgaatgg 640  Q
    |||||||| |||||||||| |||||| |||||||||||||||    
T  12981391 gaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgg 12981432  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 612 - 648
Target Start/End: Original strand, 33694805 - 33694841
Alignment:
Q  612 tgactttttcggtaaagtcgtttgaatggatcaatca 648  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  33694805 tgactttttcggtgaagtcgtttgaatggaccaatca 33694841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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