View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4978_high_13 (Length: 355)
Name: NF4978_high_13
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 42007031 - 42006688
Alignment:
| Q |
1 |
aatgtagccaattaagtacgacacatattcaattgtggctgcaatgtgaccagaaagatcaaaattttaaatcgtggttatgtcacagttgtgatcctgg |
100 |
Q |
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| T |
42007031 |
aatgtagccaattaagtacgacacatattcaattgtggctgcaatgtgaccagaaagatcaaaattt-aaatcgtggttatgtcacagttgtgatcctgg |
42006933 |
T |
|
| Q |
101 |
tctgtgagaaaattaaagtcaataaggtatgatacaagtgcggttgtggttaggatgaaatcaccaagatcgaggttttaaattgcatttccatcatgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42006932 |
tctgtgagaaaattaaagtcaataaggtatgatacaagtgcggttgtggttaggatgaaatcaccaagatcgaggttttaaattgcatttccatcatgat |
42006833 |
T |
|
| Q |
201 |
tgtgttgtgattcctcatattgggcacattgcggtccattaggtatgtgccgctgtgtggctacaattgcaatcgtgatacggttaaggagatcaaagtt |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42006832 |
tgtgttgtgattcctcatattgggcacattgcagtccagtaggtatgtgccgctgtgtggctacaattgcaatcgtgatacggttaaggagatcaaagtt |
42006733 |
T |
|
| Q |
301 |
ttaaactataactgcttcacgattgtattgtggtcattgatgatg |
345 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42006732 |
ttaaactatgactgcttcacgattgtattgtggtcattgatgatg |
42006688 |
T |
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