View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4978_high_19 (Length: 302)
Name: NF4978_high_19
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 2671601 - 2671890
Alignment:
| Q |
1 |
gattgtgtttgatgatctgaatgtgtaacgtggaaccaaaaaggtaccaagtagtctatttagttactcaactagtctaggactcttggtgccatcattt |
100 |
Q |
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| T |
2671601 |
gattgtgtttgacgatctgaatgtgtaacgtggaaccaaaaaggtaccaagtagtctatttaattactcaactagtctaggactcttggtgccatcattt |
2671700 |
T |
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| Q |
101 |
gtagaggttataagttcaagagacaaatgtcaaaataaccgcataaaagttttgtttgacaaaaaatagtagataattgataagctagtttataacagat |
200 |
Q |
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| T |
2671701 |
gtagaggttataagttcaagagacaaatgtcaaaataaccgcataaaagccttgtttgacaaaaaatagtagataactgataaactagtttataacggat |
2671800 |
T |
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| Q |
201 |
gaacttattttaaaatttaagaagagtgccactcctcattcaactcttccatcaactcctccttcaattcgtccgtcaactcttccttca |
290 |
Q |
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| T |
2671801 |
gaacttattttaaaatttaagaagagtgccactcctcgttcaactcttccatcaactcctccttcaattcatccttcaactcctccttca |
2671890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 2671855 - 2671915
Alignment:
| Q |
231 |
actcctcattcaactcttccatcaactcctccttcaattcgtccgtcaactcttccttcat |
291 |
Q |
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| T |
2671855 |
actcctccttcaattcatccttcaactcctccttcaattcgtccgtcaactcttccttcat |
2671915 |
T |
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