View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4978_high_20 (Length: 298)
Name: NF4978_high_20
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 5519852 - 5519710
Alignment:
| Q |
22 |
agactatagtcataagggaaaaccatcccataggccacccatcaataatcaccaacctaataatccatagtgtataatatt---atttcaggttcacatt |
118 |
Q |
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| T |
5519852 |
agactatagtcataagggaaaaccatcccataggccacccatcaataaccaccaacctaataatccatagtgtataatatttcaggttcatgatcatatt |
5519753 |
T |
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| Q |
119 |
caattttgtactaagttgctagcaacttatagtaatcacctag |
161 |
Q |
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| T |
5519752 |
caattttgtaccaagttgctagcaacttatagtaatcacctag |
5519710 |
T |
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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 5519670 - 5519584
Alignment:
| Q |
201 |
tttcttttttcatgtaccaaaaagtttgtttgtttgtttcaaaatattaaaaagagatatatgtagactgcatgcgttttcagtatt |
287 |
Q |
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| T |
5519670 |
tttcttttttcatgtgccaaaaagtttgtttgtttgtttccaaatattaaaaagagatatatgtagactgcatgcattttcagtatt |
5519584 |
T |
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