View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4978_high_25 (Length: 270)
Name: NF4978_high_25
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 42007043 - 42007293
Alignment:
| Q |
1 |
caaggatcacaaatcctgagaaactcgattttaaatcttgacctctatggttgcatcacgaccgtaattgcaattgcatcatacctaattgactacaatt |
100 |
Q |
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| T |
42007043 |
caaggatcacaaatcctgagaaactcgattttaaatcttgacctctatggttgcatcacgaccgtaattgcaattgcatcatacctaattgactacaatt |
42007142 |
T |
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| Q |
101 |
tgctcaggatcaaggatcacaacgcgatcacgatttaaaaccttggtcaacatgataaactaaagtgatataactcatcctacaaccatctccatcgaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42007143 |
tgctcaggatcaaggatcacaacgcgatcacgatttaaaaccttggtcaacatgataaactaaagtgatataactcatcctacaaccatctccatcgaat |
42007242 |
T |
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| Q |
201 |
tttatactaggcgaaaacaactccaaaatcaatttgaaattacaaaggatg |
251 |
Q |
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| T |
42007243 |
tctatactaggggaaaacaactccaaaatcaatttgaaattacaaaggatg |
42007293 |
T |
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