View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4978_high_26 (Length: 268)

Name: NF4978_high_26
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4978_high_26
NF4978_high_26
[»] chr6 (15 HSPs)
chr6 (22-252)||(33390432-33390674)
chr6 (89-252)||(33642096-33642259)
chr6 (96-252)||(31566603-31566759)
chr6 (25-252)||(33402985-33403212)
chr6 (90-252)||(33306925-33307087)
chr6 (86-252)||(33059990-33060156)
chr6 (86-252)||(33288010-33288176)
chr6 (96-252)||(33412363-33412519)
chr6 (87-236)||(33265318-33265467)
chr6 (87-236)||(33274462-33274611)
chr6 (86-252)||(33360933-33361099)
chr6 (87-252)||(9169294-9169459)
chr6 (22-72)||(33642281-33642331)
chr6 (96-160)||(12781945-12782009)
chr6 (96-160)||(12786136-12786200)
[»] chr2 (1 HSPs)
chr2 (86-252)||(17438168-17438334)
[»] scaffold1749 (1 HSPs)
scaffold1749 (88-252)||(583-747)
[»] scaffold0428 (1 HSPs)
scaffold0428 (88-252)||(9344-9508)
[»] chr4 (9 HSPs)
chr4 (97-237)||(31496450-31496590)
chr4 (97-237)||(31501620-31501760)
chr4 (96-252)||(31020316-31020472)
chr4 (96-252)||(31489080-31489236)
chr4 (96-225)||(31162097-31162224)
chr4 (96-252)||(31030197-31030353)
chr4 (97-252)||(31476495-31476650)
chr4 (96-201)||(31150820-31150925)
chr4 (193-251)||(31482335-31482393)


Alignment Details
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 22 - 252
Target Start/End: Original strand, 33390432 - 33390674
Alignment:
Q  22 ctttgagtttctgttcaggactcgtgcaccatctcttcaacttatattttctactnnnnnnnnn------------ctataaatttcttacttatcacgt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||                      |||||||||||||||||||||| |    
T  33390432 ctttgagtttctgttcaggactcgtgcaccatctcttcaacttatattttctacggaaaaaaaaaaaaaaaaaaaactataaatttcttacttatcacat 33390531  T
Q  110 agatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttcatgtttgacaaaag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33390532 agatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttcatgtttgacaaaag 33390631  T
Q  210 ctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  33390632 ctttatcataaattccactttgctttcgaacctcagaaggatc 33390674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 89 - 252
Target Start/End: Complemental strand, 33642259 - 33642096
Alignment:
Q  89 taaatttcttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatc 188  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| |||||||||||    
T  33642259 taaattacttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttccctccatcttgacaccatttgaaagtcttgttggaatc 33642160  T
Q  189 tttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    ||||||||||||||||||||||||    ||||||||||||||||||||| ||||||||||||||    
T  33642159 tttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatc 33642096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 96 - 252
Target Start/End: Complemental strand, 31566759 - 31566603
Alignment:
Q  96 cttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttc 195  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  31566759 cttacttatcacgtagatcccaaccaaagatactcgccacttgttttagagcttctctccatcttgacaccatctgagagtcttgtcggaatctttgttc 31566660  T
Q  196 atgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    ||||||| ||||||||| |  |||||| |||||||||||||||||||||||||||||    
T  31566659 atgtttggcaaaagcttcagaataaatcccactttgctttcgaacctcagaaggatc 31566603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 25 - 252
Target Start/End: Original strand, 33402985 - 33403212
Alignment:
Q  25 tgagtttctgttcaggactcgtgcaccatctcttcaacttatattttctactnnnnnnnnnctataaatttcttacttatcacgtagatcccaaccagag 124  Q
    ||||||||||| | |||||||||||||||||||||| ||||||||| ||||          ||||||||| |||||||||||| |||||||||||||||     
T  33402985 tgagtttctgtcctggactcgtgcaccatctcttcaccttatatttactacaaaaaaaacactataaattacttacttatcacatagatcccaaccagat 33403084  T
Q  125 atactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttcatgtttgacaaaagctttatcataaattc 224  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| | ||  |||||||||||||| |||||| |||||||| |||| |  |||||| |    
T  33403085 atactccccacttgttttagagcttccctccatcttgacaccatctcaaagccttgttggaatcttttttcatgcttgacaaaggcttcacaataaatac 33403184  T
Q  225 cactttgctttcgaacctcagaaggatc 252  Q
    ||||||||||||||||||||||||||||    
T  33403185 cactttgctttcgaacctcagaaggatc 33403212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 90 - 252
Target Start/End: Original strand, 33306925 - 33307087
Alignment:
Q  90 aaatttcttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatct 189  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| | ||| ||||||||||||    
T  33306925 aaattacttacttatcacgtagatcccaaccagagatactccccacatgttttagagcttccctccatcttgacaccatctcaaagtcttgttggaatct 33307024  T
Q  190 ttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    |||||||||||||||||| |||| |  |||||| |||||||||||||||||| ||||||||||    
T  33307025 ttgttcatgtttgacaaaggcttcacaataaatcccactttgctttcgaaccacagaaggatc 33307087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 86 - 252
Target Start/End: Original strand, 33059990 - 33060156
Alignment:
Q  86 ctataaatttcttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttgga 185  Q
    ||||||||| |||||| ||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||| ||  ||||| ||||||||    
T  33059990 ctataaattacttactcatcacgtagatcccaaccagatatactccccacttgctctagagcttctctccatcttgacaccttcatagagtcttgttgga 33060089  T
Q  186 atctttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    ||||||||||||||||||||||||||| |  |||||||||||||||||| || ||||||||||||||    
T  33060090 atctttgttcatgtttgacaaaagcttcactataaattccactttgcttccgcacctcagaaggatc 33060156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 86 - 252
Target Start/End: Original strand, 33288010 - 33288176
Alignment:
Q  86 ctataaatttcttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttgga 185  Q
    ||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||    
T  33288010 ctataaattacttacttatcacatagatcccaaccagcgatactccccacttgttttagggcttccctccatcttgacaccatctgagagtcttgttgga 33288109  T
Q  186 atctttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    || ||||||||||| ||  ||| |||| | ||||||| |||||||||||||| ||||||||||||||    
T  33288110 atgtttgttcatgtatggtaaaggcttcaccataaatcccactttgctttcgcacctcagaaggatc 33288176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 96 - 252
Target Start/End: Original strand, 33412363 - 33412519
Alignment:
Q  96 cttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| | |||| || ||||||||||||||||||    
T  33412363 cttacttatcacgtagatcccaaccagagatactccccacttggtttaaagcttccctccatcttgacaccttatgagggtcttgttggaatctttgttc 33412462  T
Q  196 atgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    |||||||||||||| || |  |||||| ||||||||||| || ||||||||||||||    
T  33412463 atgtttgacaaaagattcacaataaatcccactttgcttccgcacctcagaaggatc 33412519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 87 - 236
Target Start/End: Original strand, 33265318 - 33265467
Alignment:
Q  87 tataaatttcttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaa 186  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||| |||||   | |||||||||    
T  33265318 tataaattacttacttatcacgtagatcccaaccagagatactccccacttgttttagagcgtccctccattttgacaccttctgatgttcttgttggaa 33265417  T
Q  187 tctttgttcatgtttgacaaaagctttatcataaattccactttgctttc 236  Q
    ||||||||||||||||| ||| |||| | ||||||| |||||||||||||    
T  33265418 tctttgttcatgtttgataaaggcttcaccataaatcccactttgctttc 33265467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 87 - 236
Target Start/End: Original strand, 33274462 - 33274611
Alignment:
Q  87 tataaatttcttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaa 186  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||| |||||   | |||||||||    
T  33274462 tataaattacttacttatcacgtagatcccaaccagagatactccccacttgttttagagcgtccctccattttgacaccttctgatgttcttgttggaa 33274561  T
Q  187 tctttgttcatgtttgacaaaagctttatcataaattccactttgctttc 236  Q
    ||||||||||||||||| ||| |||| | ||||||| |||||||||||||    
T  33274562 tctttgttcatgtttgataaaggcttcaccataaatcccactttgctttc 33274611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 86 - 252
Target Start/End: Original strand, 33360933 - 33361099
Alignment:
Q  86 ctataaatttcttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttgga 185  Q
    |||||| || ||||||||||| ||||||||||||||||||||  ||||||||| | ||||||||| |||||| |||||||| ||| ||||| ||||||||    
T  33360933 ctataagttacttacttatcatgtagatcccaaccagagatatcccccacttgctctagagcttccctccatattgacaccttcttagagtcttgttgga 33361032  T
Q  186 atctttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    ||||||||||||||||||||||||||| |  ||||||  |||||||||| || ||||||||||||||    
T  33361033 atctttgttcatgtttgacaaaagcttcactataaatctcactttgcttccgcacctcagaaggatc 33361099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 87 - 252
Target Start/End: Original strand, 9169294 - 9169459
Alignment:
Q  87 tataaatttcttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaa 186  Q
    |||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||| | |||  ||||||| ||||||||| ||||| | || || |||    
T  9169294 tatagattacttacttatcacgtaggtcccaaccagagatactccccacttgttttaaacctttcctccatcctgacaccatgtgagaatcttatttgaa 9169393  T
Q  187 tctttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    |||||||||||||||| |||| |||| |  |||||| |||||||||||||| ||||||||||||||    
T  9169394 tctttgttcatgtttggcaaatgcttcacaataaatcccactttgctttcgcacctcagaaggatc 9169459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 33642331 - 33642281
Alignment:
Q  22 ctttgagtttctgttcaggactcgtgcaccatctcttcaacttatattttc 72  Q
    ||||||||||||||||  ||||||||||||||||||||| |||||||||||    
T  33642331 ctttgagtttctgttctagactcgtgcaccatctcttcaccttatattttc 33642281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 12781945 - 12782009
Alignment:
Q  96 cttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatctt 160  Q
    |||||||||||||||||||||| ||||||||| | |||||| | | ||||| |||||||| ||||    
T  12781945 cttacttatcacgtagatcccagccagagatattacccactagctgtagagtttctctccttctt 12782009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 12786136 - 12786200
Alignment:
Q  96 cttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatctt 160  Q
    ||||||||| || ||||||||| || |||||| | |||||| | | |||||||||||||||||||    
T  12786136 cttacttatgacatagatcccagccggagatattacccactagctgtagagcttctctccatctt 12786200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 86 - 252
Target Start/End: Complemental strand, 17438334 - 17438168
Alignment:
Q  86 ctataaatttcttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttgga 185  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||| |||||  || ||||||||    
T  17438334 ctataaattacttacttatcacgtagatcccaaccagcgatactccccacttgctttagagcttccctccatcttgacaccttctgaaggtcttgttgga 17438235  T
Q  186 atctttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    ||||||||||||||||||||||||||| || |||||| |||||||||||||| ||||||||||||||    
T  17438234 atctttgttcatgtttgacaaaagcttcatgataaatcccactttgctttcgcacctcagaaggatc 17438168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 88 - 252
Target Start/End: Original strand, 583 - 747
Alignment:
Q  88 ataaatttcttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaat 187  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||| | |||| || ||||| ||||    
T  583 ataaattacttacttatcacgtagatcccaaccagcgatactccccacttggtttagagcttccctccatcttgacaccttatgagggtcttgtttgaat 682  T
Q  188 ctttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    ||||||||||||||| ||||| | |    |||||| ||||||||||||   ||||||||||||||    
T  683 ctttgttcatgtttggcaaaatcgtcccaataaatcccactttgcttttttacctcagaaggatc 747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 88 - 252
Target Start/End: Original strand, 9344 - 9508
Alignment:
Q  88 ataaatttcttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaat 187  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||| | |||| || ||||| ||||    
T  9344 ataaattacttacttatcacgtagatcccaaccagcgatactccccacttggtttagagcttccctccatcttgacaccttatgagggtcttgtttgaat 9443  T
Q  188 ctttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    ||||||||||||||| ||||| | |    |||||| ||||||||||||   ||||||||||||||    
T  9444 ctttgttcatgtttggcaaaatcgtcccaataaatcccactttgcttttttacctcagaaggatc 9508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 97 - 237
Target Start/End: Complemental strand, 31496590 - 31496450
Alignment:
Q  97 ttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttca 196  Q
    |||||||||| |||||||||||||||||| |    | |||||| |||||||||| |||||||||  |||||||||||||| |||||||||||||||||||    
T  31496590 ttacttatcatgtagatcccaaccagagagatcagcgacttgtattagagcttccctccatctttgcaccatctgagagtcttgttggaatctttgttca 31496491  T
Q  197 tgtttgacaaaagctttatcataaattccactttgctttcg 237  Q
    ||||||||||| |||| | ||||||||||||||||||||||    
T  31496490 tgtttgacaaatgcttcaccataaattccactttgctttcg 31496450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 237
Target Start/End: Complemental strand, 31501760 - 31501620
Alignment:
Q  97 ttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttca 196  Q
    |||||||||||||||||| |||||||| | ||   | |||||| | |||||||| |||||||||  |||||||||||||| |||||||||| ||||||||    
T  31501760 ttacttatcacgtagatcgcaaccagatagaccggcgacttgtgtcagagcttccctccatcttagcaccatctgagagtcttgttggaatatttgttca 31501661  T
Q  197 tgtttgacaaaagctttatcataaattccactttgctttcg 237  Q
    ||||||||||| |||| |  |||||| ||||||||||||||    
T  31501660 tgtttgacaaatgcttcacaataaatcccactttgctttcg 31501620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 252
Target Start/End: Original strand, 31020316 - 31020472
Alignment:
Q  96 cttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttc 195  Q
    ||||||||||||| |||||||| ||||||||| ||||||||||| | |||||||| ||||| |||   ||||  |||||||  ||||||||| |||||||    
T  31020316 cttacttatcacgaagatcccagccagagatattccccacttgtgtcagagcttccctccaactttgtaccacatgagagtcatgttggaatgtttgttc 31020415  T
Q  196 atgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    |||||||  ||| |||| | | ||||||||  |||| | ||  ||||||||||||||    
T  31020416 atgtttggaaaaggcttcaccgtaaattcctttttgatgtctcacctcagaaggatc 31020472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 252
Target Start/End: Complemental strand, 31489236 - 31489080
Alignment:
Q  96 cttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttc 195  Q
    ||||||||||||| |||||||| || |||||| ||||||||||| | |||||||| |||||||||   ||||  |||||||  ||||||||| |||||||    
T  31489236 cttacttatcacgaagatcccagcctgagatattccccacttgtgtcagagcttccctccatctttgtaccacatgagagtcatgttggaatgtttgttc 31489137  T
Q  196 atgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    |||||||  ||| |||| | | ||||||||  |||| | ||  ||||||||||||||    
T  31489136 atgtttggaaaaggcttcaccgtaaattcctttttgatgtctcacctcagaaggatc 31489080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 96 - 225
Target Start/End: Original strand, 31162097 - 31162224
Alignment:
Q  96 cttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttc 195  Q
    ||||||||| ||| | |||||||||||||||  |  | |||||| || ||||||| |||||||||  |||||||| ||||| ||||||||||||||||||    
T  31162097 cttacttatgacgcacatcccaaccagagat--tggcgacttgtgtttgagcttccctccatctttgcaccatctcagagtcttgttggaatctttgttc 31162194  T
Q  196 atgtttgacaaaagctttatcataaattcc 225  Q
    |||||||| ||| |||| | ||||| ||||    
T  31162195 atgtttgaaaaaggcttcaacataatttcc 31162224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 252
Target Start/End: Original strand, 31030197 - 31030353
Alignment:
Q  96 cttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttc 195  Q
    ||||||||||||| |||||||| ||||||||| ||||||||||| | |||||||| ||||| |||   ||||  ||||| |  ||||||||| |||||||    
T  31030197 cttacttatcacgaagatcccagccagagatattccccacttgtgtcagagcttccctccaactttgtaccacatgagattcatgttggaatgtttgttc 31030296  T
Q  196 atgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    |||||||  ||| |||| | | ||||||||  |||| | ||  ||||||||||||||    
T  31030297 atgtttggaaaaggcttcaccgtaaattcctttttgatgtctcacctcagaaggatc 31030353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 252
Target Start/End: Complemental strand, 31476650 - 31476495
Alignment:
Q  97 ttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttca 196  Q
    ||||||||||||||||||||||||||||| |    | |||||| | |||||| | ||||||| |  |||||| ||||||| ||||| |||||| ||| ||    
T  31476650 ttacttatcacgtagatcccaaccagagagatcggcgacttgtgtcagagctgccctccatcgtagcaccatttgagagtcttgtttgaatctgtgtcca 31476551  T
Q  197 tgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    |||| |||||| |||| |  |||||| ||| |||||||||| |||  |||||||||    
T  31476550 tgttggacaaatgcttcactataaatcccagtttgctttcgcaccaaagaaggatc 31476495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 201
Target Start/End: Original strand, 31150820 - 31150925
Alignment:
Q  96 cttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttc 195  Q
    ||||||||| ||||| |||||| ||||||| | |  |||||||| | || ||||| |||||||||  ||| || | | |||||||||||||||||| |||    
T  31150820 cttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatctttcttc 31150919  T
Q  196 atgttt 201  Q
    ||||||    
T  31150920 atgttt 31150925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 31482393 - 31482335
Alignment:
Q  193 ttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggat 251  Q
    |||||||||| |||| |||||| ||||| | |||||||||||||| |||||||| ||||    
T  31482393 ttcatgtttggcaaaggctttagcataactcccactttgctttcgtacctcagatggat 31482335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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