View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4978_high_29 (Length: 262)
Name: NF4978_high_29
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 27329505 - 27329256
Alignment:
| Q |
1 |
tgttgttaagtcatattttttaatgattttttgttgtaatgttgcacttaattcaggaagtaatgtacagaaagcaatgctcaattctaaaggaaaaagt |
100 |
Q |
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| T |
27329505 |
tgttgttaagtcatattttttaatgattttttgttgtaatgttgcacttaattcaggaagtaatgtacagaaagcaatgctcaattctaaaggaaaaagt |
27329406 |
T |
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| Q |
101 |
aagaatgatgcttaacaaaacggaaaatgagcttaatcaacttgagcttattgatgtattgcaaaggcttggagtgtcttaccattttaataatgaaatt |
200 |
Q |
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| T |
27329405 |
aagaatgatgcttaacaaaacggaaaatgagcttactcaacttgagcttattgatgtattgcaaaggcttggagtgtcttaccattttaacaatgaaatt |
27329306 |
T |
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| Q |
201 |
agggacatattggataacatttacaacaaacaaacattcaagttgaagaa |
250 |
Q |
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| T |
27329305 |
agggacatattggataacatttacaacaaacaaacattcaagttgaagaa |
27329256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 54 - 253
Target Start/End: Complemental strand, 27446961 - 27446762
Alignment:
| Q |
54 |
caggaagtaatgtacagaaagcaatgctcaattctaaaggaaaaagtaagaatgatgcttaacaaaacggaaaatgagcttaatcaacttgagcttattg |
153 |
Q |
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| T |
27446961 |
caggaagtaaagcacacaaaggaattcttaatgctaaaggaaaaagtaagaatgatgtttaacaaaatggaaaatgagattgatcaacttgaatttattg |
27446862 |
T |
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| Q |
154 |
atgtattgcaaaggcttggagtgtcttaccattttaataatgaaattagggacatattggataacatttacaacaaacaaacattcaagttgaagaataa |
253 |
Q |
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| T |
27446861 |
atgtattgcaaaggcttggtgtggcttatcaatttaacaatgaaatagggaaaatattggacaacatttacaactcacaaacatccatgttgaagaataa |
27446762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 85 - 250
Target Start/End: Original strand, 18839547 - 18839712
Alignment:
| Q |
85 |
ttctaaaggaaaaagtaagaatgatgcttaacaaaacggaaaatgagcttaatcaacttgagcttattgatgtattgcaaaggcttggagtgtcttacca |
184 |
Q |
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|||||| ||||||||||| ||| ||| | ||||| ||||| |||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
18839547 |
ttctaagggaaaaagtaaaaatcatgttgtgcaaaatagaaaacgagcttgatcaacttgagtttattgatgtattgcaaaggattggagtgtcttacca |
18839646 |
T |
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| Q |
185 |
ttttaataatgaaattagggacatattggataacatttacaacaaacaaacattcaagttgaagaa |
250 |
Q |
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| T |
18839647 |
ttttaacaatgaaattagggatatattggacaacatttacaacaaacaaacatccaagttgaagaa |
18839712 |
T |
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