View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4978_high_41 (Length: 238)
Name: NF4978_high_41
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978_high_41 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 15427107 - 15426886
Alignment:
| Q |
1 |
cttgtgtttttagaactcatagtgaaatatataatgaaggagcttataaacttcaagttttatctgaataagtatattgatgagtaatgaagaaacttga |
100 |
Q |
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| T |
15427107 |
cttgtgtttttagaactcatagtgaaatatataatgaaggagcttataaacttcaagttttatctgaataagtatattgatgagtaatgaagaaacttga |
15427008 |
T |
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| Q |
101 |
tttcaccatgctatatataatggtctaggcaatggaaatatggtaatttactccaacatttctgttccatttcgtatacattttcagatgatattatcct |
200 |
Q |
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| T |
15427007 |
tttcaccatgctatatataatggtctaggcaatggaaatatggtaatttactccaacatttctgttccatttcgtatatattttcagatgatattatcct |
15426908 |
T |
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| Q |
201 |
tttaatcttagtaaatgaatat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
15426907 |
tttaatcttagtaaatgaatat |
15426886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 15426797 - 15426743
Alignment:
| Q |
166 |
tccatttcgtatacattttcagatgatattatccttttaatcttagtaaatgaat |
220 |
Q |
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|||||||| |||| |||||| |||||||||||||| |||| ||||||||||||| |
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| T |
15426797 |
tccatttcttatatattttccgatgatattatcctattaacgttagtaaatgaat |
15426743 |
T |
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