View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4978_high_43 (Length: 225)
Name: NF4978_high_43
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978_high_43 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 11386781 - 11386972
Alignment:
| Q |
20 |
aagggtccaagttcaactgcatttctgcatccaatcccatgatgcttctccaagttaacaaaattttccttaattccgcagcccacgaaggtataatttg |
119 |
Q |
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| T |
11386781 |
aagggtccaagttcaactgcatttctgcatccaatcccatgatgcttctccaagttaacaaaattttccttaattccgcagcccacgaaggtataatttg |
11386880 |
T |
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| Q |
120 |
gttgacgaagaaaattaagcagagaaaggggaacatccttatgccgacaatgtaactcaataataagacatgaatgtccatcacaaagttga |
211 |
Q |
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| T |
11386881 |
gttgacaaagaaaattaagcagagaaaggggaacatccttatgccgacaatgtaactcaataataagacatgaatgtccatcacaaagttga |
11386972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 23 - 211
Target Start/End: Original strand, 11392773 - 11392967
Alignment:
| Q |
23 |
ggtccaagttcaactgcatttctgcatccaatcccatgatgcttctccaagttaacaaaattttccttaattccgcagcccacgaaggtataatttggtt |
122 |
Q |
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| T |
11392773 |
ggtccaagttcaactgcatttctgcttccaatcccatgatgcttctccaagttaataaaattgtctttaattccgcagcccacgaaggtataatttggtt |
11392872 |
T |
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| Q |
123 |
gacgaagaaaattaagcagagaaaggggaacatccttatgccg------acaatgtaactcaataataagacatgaatgtccatcacaaagttga |
211 |
Q |
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| T |
11392873 |
gacgaagaaaattaagcagtgaaaggggaagattataatcccgaaagcaataatgtaactcaataataagacacgaatgtccatcacaaagttga |
11392967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 25 - 153
Target Start/End: Original strand, 17198297 - 17198425
Alignment:
| Q |
25 |
tccaagttcaactgcatttctgcatccaatcccatgatgcttctccaagttaacaaaattttccttaattccgcagcccacgaaggtataatttggttga |
124 |
Q |
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| T |
17198297 |
tccaagttcaactgcatttctgcatccaatcccatgatgcttctccaagttaacaaaattatccttaatgccacaaccaacgaaggtataatttggttga |
17198396 |
T |
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| Q |
125 |
cgaagaaaattaagcagagaaaggggaac |
153 |
Q |
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| T |
17198397 |
cgaagaaaattaagaagtgagaggggaac |
17198425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 38814234 - 38814109
Alignment:
| Q |
16 |
agcaaagggtccaagttcaactgcatttctgcatccaatcccatgatgcttctccaagttaacaaaattttccttaattccgcagcccacgaaggtataa |
115 |
Q |
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| T |
38814234 |
agcaaagggtccaagttcaacagcatttctacatccaaatccatactgcttctccaacttagccaaattctctttgattccaactccaacaaatgtaaca |
38814135 |
T |
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| Q |
116 |
tttggttgacgaagaaaattaagcag |
141 |
Q |
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||||| ||||||||||||||||||| |
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| T |
38814134 |
tttgggagacgaagaaaattaagcag |
38814109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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