View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4978_high_46 (Length: 207)
Name: NF4978_high_46
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978_high_46 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 47600732 - 47600542
Alignment:
| Q |
1 |
aacgtaatttgaatcagtcattaaagcaatggagaaattcatgaacaaatctaaagaatgaggggaaaaattgatgacagtgagaaaagtttccaacctc |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47600732 |
aacgtaatttgattcagtcattaaagcaatggagaaattcatgaacgaatctacagaatgagggaaaaaattgatgacagtgagaaaagtttccaacctc |
47600633 |
T |
|
| Q |
101 |
aattgacgaccagcttggctcgccggagttgcgatttctggaatggaacaaaagaaatcgcagcggcggcgaaaggtggttacgatctgtg |
191 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47600632 |
aattgacgaccagcttggctcgccggagttgcaatttctggaatggaacaaaagaaatcgcagcggcggcgaaaggtggttacgatctgtg |
47600542 |
T |
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