View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4978_low_1 (Length: 784)

Name: NF4978_low_1
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4978_low_1
NF4978_low_1
[»] chr3 (27 HSPs)
chr3 (566-754)||(5366110-5366299)
chr3 (562-751)||(29100268-29100459)
chr3 (571-700)||(3328198-3328326)
chr3 (566-646)||(21353674-21353753)
chr3 (659-758)||(33386461-33386557)
chr3 (571-754)||(1417281-1417460)
chr3 (558-617)||(4386851-4386911)
chr3 (571-700)||(8126748-8126875)
chr3 (572-700)||(18552726-18552851)
chr3 (572-754)||(40592572-40592750)
chr3 (558-618)||(25517085-25517146)
chr3 (722-755)||(25517446-25517479)
chr3 (659-755)||(27986245-27986338)
chr3 (567-646)||(21156542-21156620)
chr3 (566-600)||(29196507-29196541)
chr3 (573-700)||(35925599-35925723)
chr3 (572-700)||(36029212-36029338)
chr3 (571-613)||(37466408-37466450)
chr3 (659-700)||(1306154-1306195)
chr3 (659-700)||(1736145-1736186)
chr3 (659-700)||(3715843-3715884)
chr3 (659-700)||(16264553-16264594)
chr3 (659-700)||(27453164-27453205)
chr3 (659-700)||(27974793-27974834)
chr3 (659-700)||(32143527-32143568)
chr3 (659-700)||(39032395-39032436)
chr3 (659-700)||(47923745-47923786)
[»] chr4 (12 HSPs)
chr4 (566-755)||(34670463-34670650)
chr4 (562-706)||(37781970-37782114)
chr4 (669-755)||(873316-873401)
chr4 (582-700)||(5112365-5112482)
chr4 (337-412)||(873731-873807)
chr4 (659-754)||(16623094-16623186)
chr4 (659-754)||(16628673-16628765)
chr4 (563-639)||(18912276-18912351)
chr4 (659-700)||(10047585-10047626)
chr4 (659-700)||(24334015-24334056)
chr4 (659-700)||(28468388-28468429)
chr4 (659-700)||(31985485-31985526)
[»] chr2 (17 HSPs)
chr2 (566-740)||(18674213-18674386)
chr2 (558-755)||(28770572-28770768)
chr2 (664-754)||(12632890-12632980)
chr2 (337-420)||(16388261-16388344)
chr2 (337-420)||(16388674-16388757)
chr2 (558-645)||(2869599-2869687)
chr2 (572-754)||(3278118-3278297)
chr2 (566-642)||(15903800-15903875)
chr2 (572-700)||(14698861-14698986)
chr2 (674-754)||(41586351-41586429)
chr2 (566-700)||(2837881-2838015)
chr2 (659-700)||(23078323-23078364)
chr2 (659-754)||(36757563-36757655)
chr2 (572-700)||(34388969-34389096)
chr2 (659-700)||(8040268-8040309)
chr2 (659-700)||(10445319-10445360)
chr2 (659-700)||(21630149-21630190)
[»] scaffold0002 (1 HSPs)
scaffold0002 (558-752)||(14785-14979)
[»] chr1 (30 HSPs)
chr1 (562-755)||(25116498-25116690)
chr1 (566-758)||(8281430-8281620)
chr1 (571-754)||(47098626-47098804)
chr1 (337-420)||(8281135-8281219)
chr1 (571-754)||(47102640-47102821)
chr1 (571-700)||(19073046-19073173)
chr1 (571-700)||(19120936-19121063)
chr1 (337-420)||(10996772-10996856)
chr1 (572-754)||(32889558-32889734)
chr1 (568-642)||(17345429-17345502)
chr1 (558-646)||(35109443-35109531)
chr1 (571-646)||(32736902-32736976)
chr1 (339-403)||(35109745-35109811)
chr1 (562-603)||(11032268-11032309)
chr1 (563-603)||(918428-918468)
chr1 (571-700)||(40816668-40816793)
chr1 (563-646)||(3019839-3019921)
chr1 (592-707)||(11031320-11031433)
chr1 (566-700)||(22819541-22819676)
chr1 (659-700)||(3281911-3281952)
chr1 (569-618)||(10997071-10997120)
chr1 (669-755)||(10997173-10997263)
chr1 (659-700)||(13598604-13598645)
chr1 (659-700)||(13604474-13604515)
chr1 (659-700)||(16124366-16124407)
chr1 (659-700)||(19358693-19358734)
chr1 (659-700)||(19361282-19361323)
chr1 (659-700)||(19366158-19366199)
chr1 (659-700)||(19379922-19379963)
chr1 (659-700)||(29652017-29652058)
[»] chr7 (20 HSPs)
chr7 (571-754)||(23402814-23402993)
chr7 (571-754)||(20284206-20284385)
chr7 (566-700)||(5817122-5817255)
chr7 (572-700)||(9185026-9185153)
chr7 (572-700)||(9189859-9189986)
chr7 (572-700)||(2580508-2580635)
chr7 (688-758)||(27984678-27984747)
chr7 (659-754)||(46516106-46516198)
chr7 (571-700)||(9235434-9235562)
chr7 (572-700)||(29159922-29160050)
chr7 (468-512)||(28617334-28617378)
chr7 (566-600)||(24526017-24526051)
chr7 (558-603)||(28617173-28617219)
chr7 (659-700)||(56153-56194)
chr7 (659-700)||(2479540-2479581)
chr7 (564-621)||(4162699-4162756)
chr7 (659-700)||(4796520-4796561)
chr7 (659-700)||(21640014-21640055)
chr7 (659-700)||(21646212-21646253)
chr7 (659-700)||(21983490-21983531)
[»] chr8 (17 HSPs)
chr8 (567-750)||(31513135-31513314)
chr8 (566-758)||(3051232-3051420)
chr8 (572-700)||(19752246-19752372)
chr8 (573-756)||(8863425-8863604)
chr8 (568-641)||(9054748-9054820)
chr8 (566-700)||(7493025-7493158)
chr8 (566-615)||(6813795-6813845)
chr8 (659-700)||(19175606-19175647)
chr8 (659-754)||(7412544-7412636)
chr8 (572-700)||(26403081-26403208)
chr8 (566-600)||(30291620-30291654)
chr8 (558-646)||(5990467-5990555)
chr8 (725-754)||(11712237-11712266)
chr8 (659-700)||(26288096-26288137)
chr8 (659-700)||(26301353-26301394)
chr8 (659-700)||(26313347-26313388)
chr8 (659-700)||(31071079-31071120)
[»] chr6 (15 HSPs)
chr6 (567-755)||(30517922-30518112)
chr6 (562-707)||(33721404-33721548)
chr6 (572-700)||(31936695-31936820)
chr6 (566-700)||(14521785-14521919)
chr6 (582-754)||(24435773-24435939)
chr6 (571-754)||(31979631-31979808)
chr6 (571-700)||(21801196-21801323)
chr6 (332-418)||(98967-99055)
chr6 (566-600)||(16569047-16569081)
chr6 (662-700)||(21356244-21356282)
chr6 (663-700)||(5572095-5572132)
chr6 (659-700)||(5757330-5757371)
chr6 (659-700)||(18233050-18233091)
chr6 (659-700)||(22963903-22963944)
chr6 (659-700)||(23824449-23824490)
[»] scaffold0016 (1 HSPs)
scaffold0016 (566-755)||(102292-102479)
[»] chr5 (19 HSPs)
chr5 (562-755)||(2630339-2630530)
chr5 (572-754)||(31300396-31300574)
chr5 (571-700)||(28832374-28832502)
chr5 (558-638)||(33030854-33030934)
chr5 (563-642)||(6741961-6742039)
chr5 (582-700)||(11181684-11181800)
chr5 (355-420)||(34842436-34842500)
chr5 (567-641)||(3651613-3651686)
chr5 (571-696)||(42127266-42127390)
chr5 (684-751)||(3325821-3325885)
chr5 (659-754)||(30900070-30900161)
chr5 (567-646)||(5611255-5611333)
chr5 (572-700)||(10281870-10281997)
chr5 (572-700)||(17003811-17003938)
chr5 (659-700)||(9353184-9353225)
chr5 (659-700)||(11916824-11916865)
chr5 (563-600)||(31182986-31183022)
chr5 (659-700)||(36932200-36932241)
chr5 (659-700)||(38219604-38219645)
[»] scaffold0140 (1 HSPs)
scaffold0140 (659-755)||(8217-8310)
[»] scaffold0148 (1 HSPs)
scaffold0148 (659-700)||(10935-10976)
[»] scaffold0098 (1 HSPs)
scaffold0098 (659-700)||(45402-45443)
[»] scaffold0087 (2 HSPs)
scaffold0087 (659-700)||(36684-36725)
scaffold0087 (659-700)||(43813-43854)
[»] scaffold0076 (2 HSPs)
scaffold0076 (562-646)||(15895-15977)
scaffold0076 (337-409)||(16190-16263)
[»] scaffold0006 (2 HSPs)
scaffold0006 (659-700)||(5889-5930)
scaffold0006 (659-700)||(133131-133172)


Alignment Details
Target: chr3 (Bit Score: 83; Significance: 7e-39; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 566 - 754
Target Start/End: Complemental strand, 5366299 - 5366110
Alignment:
Q  566 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 665  Q
    ||||||| ||| ||||| |||||||||||| ||||||  ||||| |||||| ||||||||| |||||| |||||||||||| ||         |||||||    
T  5366299 ctcacaatgaaaaaatcttaatttctacccttttttctagtcacccacactaataaatgaatcctaagcgaaaacactaaaggaaacttttcgatccttc 5366200  T
Q  666 caataat-gaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 754  Q
    |||| || ||||| | ||||||||||||||||||||||||||  || ||||||||||||||||||||||||||| |||||||||||||||    
T  5366199 caattattgaaatcttactacccaaggtgtttacaaatgttttccaactcaagaaataaactctcaccaaagactctcaaccctaaagtt 5366110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 562 - 751
Target Start/End: Original strand, 29100268 - 29100459
Alignment:
Q  562 aaaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatc 661  Q
    ||||||||||||||||||| |||||||||||| | ||||||| |||||  ||||||||||||||| | ||||||| || |||||| ||         |||    
T  29100268 aaaactcacaaagaacaaaccctaatttctactcgtttttcaagtcacctacactcataaatgaatcataagagataatactaaaggaaacttttttatc 29100367  T
Q  662 cttccaataatgaaatttcactacccaaggtgtttac--aaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaa 751  Q
    |||| | ||||  ||| |||| |||| | ||||| ||  ||||||||| || |  |||||||||||||||||||||||||||||||||||||    
T  29100368 cttcaattaatataatctcaccacccgatgtgttcacaaaaatgtttcccaacctaagaaataaactctcaccaaagacactcaaccctaaa 29100459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 571 - 700
Target Start/End: Complemental strand, 3328326 - 3328198
Alignment:
Q  571 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 670  Q
    ||||||||| |||||||||||||||||||||||  |||| ||||||| | |||| | ||||||||||||||| ||| ||         |||||||||||     
T  3328326 aaagaacaagtcctaatttctacccatttttcatatcacccacactc-tcaatgtatcctaagagaaaacacaaaaggaagttttttgatccttccaatg 3328228  T
Q  671 atgaaatttcactacccaaggtgtttacaa 700  Q
     |||||| ||||||||||||||||||||||    
T  3328227 ctgaaatctcactacccaaggtgtttacaa 3328198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 566 - 646
Target Start/End: Original strand, 21353674 - 21353753
Alignment:
Q  566 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 646  Q
    ||||||||||||| | |||||||||||||||||||||| | |||||||||| |  |||||| | |||||||||||||||||    
T  21353674 ctcacaaagaacacaacctaatttctacccatttttcatgccactcacactta-caatgaatcttaagagaaaacactaaa 21353753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 659 - 758
Target Start/End: Complemental strand, 33386557 - 33386461
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttctct 758  Q
    |||||||||||  |||||| |||||||||||||||||||| ||||||||||| | ||||| ||   ||| |  |||||||||||||||||||||||||||    
T  33386557 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttctcaacccaagagat--cctcactacaaagacactcaaccctaaagttctct 33386461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 571 - 754
Target Start/End: Complemental strand, 1417460 - 1417281
Alignment:
Q  571 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 670  Q
    ||||||||| |||||||||||||||||||||||  |||| |||||||   |||||| ||||||||||||||| |||  |         |||||| ||||     
T  1417460 aaagaacaagtcctaatttctacccatttttcatatcacccacactc-ccaatgaatcctaagagaaaacacaaaagaaaactttttgatcctttcaatg 1417362  T
Q  671 atgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 754  Q
     |||||| |||||||| || |||||||| |||||||| || | ||||  |||| ||| |  |||||||||||||||||||||||    
T  1417361 gtgaaatctcactacctaaagtgtttac-aatgtttcccaacccaag--ataacctcactacaaagacactcaaccctaaagtt 1417281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 558 - 617
Target Start/End: Complemental strand, 4386911 - 4386851
Alignment:
Q  558 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactc 617  Q
    |||||||| ||||||||||||||| |||||||||||| ||||||||| ||||| |||||||    
T  4386911 gcttaaaagctcacaaagaacaaaacctaatttctactcatttttcaagtcacccacactc 4386851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 571 - 700
Target Start/End: Original strand, 8126748 - 8126875
Alignment:
Q  571 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 670  Q
    |||||||||  | ||||||||||||||||||   ||||| ||||||| | |||||| | ||||||||||||| ||| ||         |||||||||||     
T  8126748 aaagaacaatacttaatttctacccatttttgt-gtcacccacactc-tcaatgaatcttaagagaaaacacaaaaagaagctttttgatccttccaatg 8126845  T
Q  671 atgaaatttcactacccaaggtgtttacaa 700  Q
    ||||||| ||||||||||||||||||||||    
T  8126846 atgaaatctcactacccaaggtgtttacaa 8126875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 572 - 700
Target Start/End: Complemental strand, 18552851 - 18552726
Alignment:
Q  572 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 671  Q
    ||||||||  |||||||||||||||||||    ||||| ||||||| | |||||| ||||||||||||||| ||| ||         |||||||||||      
T  18552851 aagaacaagacctaatttctacccattttgt--gtcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagttttttgatccttccaatgg 18552755  T
Q  672 tgaaatttcactacccaaggtgtttacaa 700  Q
    |||||| ||||||||||||||||||||||    
T  18552754 tgaaatctcactacccaaggtgtttacaa 18552726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 572 - 754
Target Start/End: Complemental strand, 40592750 - 40592572
Alignment:
Q  572 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 670  Q
    |||||||||  ||||||||||||||||||    ||||| ||| |||| || ||||| ||||||||||||||| ||| ||         |||||||||||     
T  40592750 aagaacaaaatctaatttctacccattttgt--gtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 40592653  T
Q  671 atgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 754  Q
     |||||| |||||||||||||||||||| |||||||| || | ||||| ||   ||| |  |||||||||||||||||||||||    
T  40592652 gtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaagagat--cctcactacaaagacactcaaccctaaagtt 40592572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 618
Target Start/End: Original strand, 25517085 - 25517146
Alignment:
Q  558 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactca 618  Q
    |||||||| ||||||||||||||| ||||||||||||  |||||||| ||||| ||||||||    
T  25517085 gcttaaaagctcacaaagaacaaaccctaatttctacttatttttcaagtcacccacactca 25517146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 722 - 755
Target Start/End: Original strand, 25517446 - 25517479
Alignment:
Q  722 aaactctcaccaaagacactcaaccctaaagttc 755  Q
    ||||||||||||||||||||||||||||||||||    
T  25517446 aaactctcaccaaagacactcaaccctaaagttc 25517479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 659 - 755
Target Start/End: Complemental strand, 27986338 - 27986245
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 755  Q
    |||||||||||  |||||| |||||||||||||||||||| |||||||| || | ||||| ||   ||| |  ||||||||||||||||||||||||    
T  27986338 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaagagat--cctcactacaaagacactcaaccctaaagttc 27986245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 646
Target Start/End: Original strand, 21156542 - 21156620
Alignment:
Q  567 tcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 646  Q
    ||||||||||||||  || ||||||| |||||||| | ||||   ||||||||||||||  |||||||||||||||||||    
T  21156542 tcacaaagaacaaaatcttatttctatccatttttaa-gtcataaacactcataaatgattcctaagagaaaacactaaa 21156620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 566 - 600
Target Start/End: Original strand, 29196507 - 29196541
Alignment:
Q  566 ctcacaaagaacaaatcctaatttctacccatttt 600  Q
    ||||||||||||||| |||||||||||||||||||    
T  29196507 ctcacaaagaacaaaccctaatttctacccatttt 29196541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 573 - 700
Target Start/End: Original strand, 35925599 - 35925723
Alignment:
Q  573 agaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 671  Q
    |||||||| |||||||||||||||||| |   ||||| ||| |||| || ||||| ||||||||||||||| ||| ||         |||||||||||      
T  35925599 agaacaaaacctaatttctacccatttgt---gtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaagcttttg-atccttccaatgg 35925694  T
Q  672 tgaaatttcactacccaaggtgtttacaa 700  Q
    |||||| ||||||||||||||||||||||    
T  35925695 tgaaatctcactacccaaggtgtttacaa 35925723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 572 - 700
Target Start/End: Original strand, 36029212 - 36029338
Alignment:
Q  572 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 670  Q
    ||||||||  |||||||||||||||||||    ||||||||| |||| || ||||| ||||||||||||||| ||| ||         |||||||||||     
T  36029212 aagaacaagacctaatttctacccattttgt--gtcactcactctcaaaatatgaatcctaagagaaaacacaaaaggaagcttttg-atccttccaatg 36029308  T
Q  671 atgaaatttcactacccaaggtgtttacaa 700  Q
     |||||| ||||||||||||||||||||||    
T  36029309 gtgaaatctcactacccaaggtgtttacaa 36029338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 571 - 613
Target Start/End: Original strand, 37466408 - 37466450
Alignment:
Q  571 aaagaacaaatcctaatttctacccatttttcacgtcactcac 613  Q
    ||||||||| |||||||||||||||||||||||  ||||||||    
T  37466408 aaagaacaagtcctaatttctacccatttttcatatcactcac 37466450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Original strand, 1306154 - 1306195
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  1306154 atccttccaatggtgaaatctcactacccaaggtgtttacaa 1306195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Complemental strand, 1736186 - 1736145
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  1736186 atccttccaatggtgaaatctcactacccaaggtgtttacaa 1736145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Complemental strand, 3715884 - 3715843
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  3715884 atccttccaatggtgaaatctcactacccaaggtgtttacaa 3715843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Original strand, 16264553 - 16264594
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  16264553 atccttccaatggtgaaatctcactacccaaggtgtttacaa 16264594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Original strand, 27453164 - 27453205
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  27453164 atccttccaatggtgaaatctcactacccaaggtgtttacaa 27453205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Complemental strand, 27974834 - 27974793
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  27974834 atccttccaatggtgaaatctcactacccaaggtgtttacaa 27974793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Original strand, 32143527 - 32143568
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  32143527 atccttccaatggtgaaatctcactacccaaggtgtttacaa 32143568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Complemental strand, 39032436 - 39032395
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  39032436 atccttccaatggtgaaatctcactacccaaggtgtttacaa 39032395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Complemental strand, 47923786 - 47923745
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  47923786 atccttccaatggtgaaatctcactacccaaggtgtttacaa 47923745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 2e-36; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 566 - 755
Target Start/End: Complemental strand, 34670650 - 34670463
Alignment:
Q  566 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 665  Q
    ||||||||||||||||| ||||||||| |||||||||| ||||||||||||||  |||||| |||||||||||||||||||  |         |||||||    
T  34670650 ctcacaaagaacaaatcataatttctatccatttttcaagtcactcacactca-caatgaatcctaagagaaaacactaaagaaaacttttagatccttc 34670552  T
Q  666 caataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 755  Q
    |  |||||| || |||||||||||| || |||||||||||||||| ||||||||| |||||||||| ||| |||||| ||||||||||||    
T  34670551 ctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaagaaa-aaactctcactaaatacactctaccctaaagttc 34670463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 562 - 706
Target Start/End: Original strand, 37781970 - 37782114
Alignment:
Q  562 aaaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatc 661  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||  |||||| |||||||| | ||||||||||||||||| ||         ||     
T  37781970 aaaactcacaaagaacaaatcttaatttctacccatttttcaagtcacctacactcgtaaatgaatcttaagagaaaacactaaaagagactttttgatt 37782069  T
Q  662 cttccaataatgaaatttcactacccaaggtgtttacaaatgttt 706  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  37782070 cttccaataatgaaatctcactacccaaggtgtttacaaatgttt 37782114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 669 - 755
Target Start/End: Complemental strand, 873401 - 873316
Alignment:
Q  669 taatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 755  Q
    |||||| || ||||||| ||||||||||||||||||| | || | ||||||| ||| | ||||||||||||||||||||||||||||    
T  873401 taatgagatctcactactcaaggtgtttacaaatgttccccaacccaagaaa-aaattatcaccaaagacactcaaccctaaagttc 873316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 582 - 700
Target Start/End: Original strand, 5112365 - 5112482
Alignment:
Q  582 cctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataatgaaatttca 681  Q
    |||||||| |||| |||||| | |||||||||||||| || |||| ||||||||||||||  ||| ||         |||||||||||  |||||| |||    
T  5112365 cctaatttgtacctattttttaagtcactcacactcacaa-tgaatcctaagagaaaacataaaaggaagctttttgatccttccaatggtgaaatctca 5112463  T
Q  682 ctacccaaggtgtttacaa 700  Q
    |||||||||||||||||||    
T  5112464 ctacccaaggtgtttacaa 5112482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 337 - 412
Target Start/End: Complemental strand, 873807 - 873731
Alignment:
Q  337 ttgtgaattcaaacaaataatcaaaccaataaa-cttagatgtgtagagtaaagtaagtagtaatcaaagagtaaag 412  Q
    ||||||||| ||||||||||| | ||||||||| ||||||||| |||||||| | |||| |||||||| ||| ||||    
T  873807 ttgtgaatttaaacaaataattacaccaataaaacttagatgtatagagtaatggaagttgtaatcaatgagcaaag 873731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 659 - 754
Target Start/End: Complemental strand, 16623186 - 16623094
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 754  Q
    |||||||||||  |||||| |||||||||||||||||||| |||||||| || | ||||| ||   ||| |  |||||||||||||||||||||||    
T  16623186 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaagagat--cctcactacaaagacactcaaccctaaagtt 16623094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 659 - 754
Target Start/End: Complemental strand, 16628765 - 16628673
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 754  Q
    |||||||||||  |||||| |||||||||||||||||||| |||||||| || | ||||| ||   ||| |  |||||||||||||||||||||||    
T  16628765 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaagagat--cctcactacaaagacactcaaccctaaagtt 16628673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 563 - 639
Target Start/End: Complemental strand, 18912351 - 18912276
Alignment:
Q  563 aaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaa 639  Q
    |||||||||||||||||| ||||| || || |||||||||| |||||||| || ||  |||||| ||||||||||||    
T  18912351 aaactcacaaagaacaaaccctaaattatatccatttttcaagtcactcaaaccca-caatgaatcctaagagaaaa 18912276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Original strand, 10047585 - 10047626
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  10047585 atccttccaatggtgaaatctcactacccaaggtgtttacaa 10047626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Original strand, 24334015 - 24334056
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  24334015 atccttccaatggtgaaatctcactacccaaggtgtttacaa 24334056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Complemental strand, 28468429 - 28468388
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  28468429 atccttccaatggtgaaatctcactacccaaggtgtttacaa 28468388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Complemental strand, 31985526 - 31985485
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||| ||  |||||||||||||||||||||||||||||    
T  31985526 atccttcccatggtgaaatttcactacccaaggtgtttacaa 31985485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 566 - 740
Target Start/End: Complemental strand, 18674386 - 18674213
Alignment:
Q  566 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 665  Q
    ||||||||||||||| | ||||||||| |||||||||| ||||| |||||||||||||||| | |||||||||||| |||| ||         ||||||     
T  18674386 ctcacaaagaacaaaccataatttctatccatttttcaagtcacccacactcataaatgaatcataagagaaaacattaaaggaagctttttgatcctt- 18674288  T
Q  666 caataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacac 740  Q
    |||||||||||| ||||| | |||||||||||| |||||||| || | |||||| ||||||||||||||||||||    
T  18674287 caataatgaaatctcactgctcaaggtgtttacgaatgtttcccaacccaagaattaaactctcaccaaagacac 18674213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 558 - 755
Target Start/End: Complemental strand, 28770768 - 28770572
Alignment:
Q  558 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnn 656  Q
    |||||||| |||||||||||||||  ||||||||||||||||||||| ||||  |||||||  || |||| ||||||||||||||||||| ||           
T  28770768 gcttaaaagctcacaaagaacaaactctaatttctacccatttttcaagtcatacacactcgcaa-tgaatcctaagagaaaacactaaaggaaactttt 28770670  T
Q  657 nnatccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 755  Q
      |||||||   |||||| || ||||||||||||||||||||||||||||  || |  |||||| |||| |||||||||||||||||||||||||||||    
T  28770669 ttatccttcagctaatgagatctcactacccaaggtgtttacaaatgttttccaaccaaagaaa-aaacactcaccaaagacactcaaccctaaagttc 28770572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 664 - 754
Target Start/End: Original strand, 12632890 - 12632980
Alignment:
Q  664 tccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 754  Q
    ||||||||| |||| |||  ||||||||||||||||||||||||||| | ||| |||||||||||||  ||||||||||||||||||||||    
T  12632890 tccaataataaaatctcatcacccaaggtgtttacaaatgtttctcaacccaataaataaactctcattaaagacactcaaccctaaagtt 12632980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 337 - 420
Target Start/End: Original strand, 16388261 - 16388344
Alignment:
Q  337 ttgtgaattcaaacaaataatcaaaccaataaacttagatgtgtagagtaaagtaagtagtaatcaaagagtaaagtagtctca 420  Q
    |||||||||| |||||||||||| ||| |||||||||||||||| ||| |||| ||||||||||||| || |||||||||||||    
T  16388261 ttgtgaattcgaacaaataatcacaccgataaacttagatgtgtggagcaaagaaagtagtaatcaatgaataaagtagtctca 16388344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 337 - 420
Target Start/End: Complemental strand, 16388757 - 16388674
Alignment:
Q  337 ttgtgaattcaaacaaataatcaaaccaataaacttagatgtgtagagtaaagtaagtagtaatcaaagagtaaagtagtctca 420  Q
    ||||||||||||||||||||||| | |||||||||||||||||| ||| |||   |||||||||||| ||||||||||||||||    
T  16388757 ttgtgaattcaaacaaataatcacatcaataaacttagatgtgtggagcaaaaatagtagtaatcaatgagtaaagtagtctca 16388674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 558 - 645
Target Start/End: Complemental strand, 2869687 - 2869599
Alignment:
Q  558 gcttaaaa-ctcacaaagaacaaat-cctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaa 645  Q
    |||||||| |||||||||||||||  |||||||||||||||||||||| ||||| ||||||| | |||||| ||||||||||||||||||    
T  2869687 gcttaaaagctcacaaagaacaaaaacctaatttctacccatttttcaagtcacccacactc-tcaatgaatcctaagagaaaacactaa 2869599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 572 - 754
Target Start/End: Original strand, 3278118 - 3278297
Alignment:
Q  572 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 671  Q
    |||||||||| |  |||||| | |||||||||  ||||||||||||| || |||||||||||||||||| ||||| ||         |||| ||| ||||    
T  3278118 aagaacaaattccgatttcttctcatttttcaattcactcacactcacaa-tgaaccctaagagaaaacgctaaaggaagttttttgatccgtcctataa 3278216  T
Q  672 tgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 754  Q
    |||||| |||||| |||||||||||||||||||||  || | ||||  | || |||||| ||| || ||||||||||||||||    
T  3278217 tgaaatctcactatccaaggtgtttacaaatgttttccaacccaag--agaatctctcatcaacgatactcaaccctaaagtt 3278297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 566 - 642
Target Start/End: Complemental strand, 15903875 - 15903800
Alignment:
Q  566 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacac 642  Q
    |||||||||||||||| ||||||||||||||||||||| ||||| ||||||| | |||||| |||| ||||||||||    
T  15903875 ctcacaaagaacaaattctaatttctacccatttttcaagtcacccacactc-tcaatgaatcctatgagaaaacac 15903800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 572 - 700
Target Start/End: Complemental strand, 14698986 - 14698861
Alignment:
Q  572 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 671  Q
    ||||||||  |||||||||||||||||||    ||||| ||||||| | |||||| ||||||||||||||| ||| ||         ||||||||||||     
T  14698986 aagaacaagacctaatttctacccattttgt--gtcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatag 14698890  T
Q  672 tgaaatttcactacccaaggtgtttacaa 700  Q
    |||||| ||||||||||||||||||||||    
T  14698889 tgaaatctcactacccaaggtgtttacaa 14698861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 674 - 754
Target Start/End: Complemental strand, 41586429 - 41586351
Alignment:
Q  674 aaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 754  Q
    |||| |||||||||||||||||||||| |||||  || | ||||| |  | ||||||||||||||||||||||||||||||    
T  41586429 aaatctcactacccaaggtgtttacaactgttttccaacccaagaga--agctctcaccaaagacactcaaccctaaagtt 41586351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 566 - 700
Target Start/End: Complemental strand, 2838015 - 2837881
Alignment:
Q  566 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 665  Q
    ||||||||||||| | |||||||| | ||||||||||| ||||| ||| ||  | |||||| ||||||||||||||||||| ||         |||||||    
T  2838015 ctcacaaagaacacaacctaatttttgcccatttttcatgtcacccac-cttctcaatgaatcctaagagaaaacactaaaggaatattttttatccttc 2837917  T
Q  666 caataatgaaatt-tcactacccaaggtgtttacaa 700  Q
    ||||  ||||||| |||||| |||||||||||||||    
T  2837916 caatggtgaaattctcactatccaaggtgtttacaa 2837881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 659 - 700
Target Start/End: Complemental strand, 23078364 - 23078323
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    ||||||||||| ||||||| ||||||||||||||||||||||    
T  23078364 atccttccaatgatgaaatctcactacccaaggtgtttacaa 23078323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 659 - 754
Target Start/End: Complemental strand, 36757655 - 36757563
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 754  Q
    |||||||||||  |||||| |||||||||||||||||||| |||||||| || | ||||| ||   ||| |  |||||||||||||||||||||||    
T  36757655 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaagagat--cctcactacaaagacactcaaccctaaagtt 36757563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 572 - 700
Target Start/End: Original strand, 34388969 - 34389096
Alignment:
Q  572 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 670  Q
    ||||||||  |||||||||||||||||||    ||||| ||| |||| || ||||| ||||||||||||||| ||| ||         |||||||||||     
T  34388969 aagaacaagacctaatttctacccattttgt--gtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 34389066  T
Q  671 atgaaatttcactacccaaggtgtttacaa 700  Q
     |||||| ||||||||||||||||||||||    
T  34389067 gtgaaatctcactacccaaggtgtttacaa 34389096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Original strand, 8040268 - 8040309
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  8040268 atccttccaatggtgaaatctcactacccaaggtgtttacaa 8040309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Complemental strand, 10445360 - 10445319
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  10445360 atccttccaatggtgaaatctcactacccaaggtgtttacaa 10445319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Original strand, 21630149 - 21630190
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  21630149 atccttccaatggtgaaatctcactacccaaggtgtttacaa 21630190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 558 - 752
Target Start/End: Original strand, 14785 - 14979
Alignment:
Q  558 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaa-tgaaccctaagagaaaacactaaatgannnnnn 655  Q
    |||||||| |||||||||||| || |||| || ||||| |||||||| ||||| |||||||| ||| |||| ||||||||||||||||||| ||          
T  14785 gcttaaaagctcacaaagaactaaccctagttcctacctatttttcaagtcacccacactcacaaagtgaatcctaagagaaaacactaaaggagttttt 14884  T
Q  656 nnnatccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaag 752  Q
       || ||||||||||| |||| |||| ||| ||||| |||||||||||||| || | ||| |||||||||||||||||||||| ||||||||||||    
T  14885 g--atgcttccaataataaaatctcaccaccaaaggtatttacaaatgtttcccaacccaaaaaataaactctcaccaaagacattcaaccctaaag 14979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 4e-28; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 562 - 755
Target Start/End: Complemental strand, 25116690 - 25116498
Alignment:
Q  562 aaaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatc 661  Q
    ||||||||||||||| ||  |||||||| |||||  |||||| ||||  ||||||||||||| || | |||||||||||||||||  |         |||    
T  25116690 aaaactcacaaagaagaacccctaatttttaccc--ttttcaagtcatccacactcataaataaatcttaagagaaaacactaaagaaatttttttaatc 25116593  T
Q  662 cttccaataatgaaatttcactaccc-aaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 755  Q
    |||| ||||||||||| ||||||||| || ||||||||||||||||| || | ||| |||||||||||||| ||||||||||||| |||||||||    
T  25116592 cttcaaataatgaaatctcactaccctaatgtgtttacaaatgtttcccaacccaataaataaactctcacaaaagacactcaactctaaagttc 25116498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 566 - 758
Target Start/End: Original strand, 8281430 - 8281620
Alignment:
Q  566 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 665  Q
    |||||||||||||||| |||||||||| | ||| || | ||||| | |||||| || |||| || |||||||||||||||| ||         || ||||    
T  8281430 ctcacaaagaacaaattctaatttctatcaattatttaagtcacccgcactcacaa-tgaatccaaagagaaaacactaaaggaagtttttttattcttc 8281528  T
Q  666 caataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttctct 758  Q
    |  |||||| || ||||||||||||||||||||||||| ||| || | ||||||| ||||||||| ||||||  | |||||||||||||||||    
T  8281529 ctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaagaaa-aaactctcatcaaagatgcccaaccctaaagttctct 8281620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 571 - 754
Target Start/End: Complemental strand, 47098804 - 47098626
Alignment:
Q  571 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 670  Q
    ||||||||| |||||||||||||||| ||||||| |||| ||||||| | |||||| ||||||| ||||||| ||| ||         |||||||||||     
T  47098804 aaagaacaagtcctaatttctaccca-ttttcacatcacccacactc-tcaatgaaacctaagaaaaaacacaaaaggaagctttttgatccttccaatg 47098707  T
Q  671 atgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 754  Q
     |||||| |||||||||||||||||||| |||||||| || | ||||  | || ||| |  |||||||||||||||||||||||    
T  47098706 gtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaag--agaacctcgctacaaagacactcaaccctaaagtt 47098626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 337 - 420
Target Start/End: Original strand, 8281135 - 8281219
Alignment:
Q  337 ttgtgaattcaaacaaataatcaaaccaata-aacttagatgtgtagagtaaagtaagtagtaatcaaagagtaaagtagtctca 420  Q
    |||||||||||||| |||||| | ||||||| |||||||||||||||| ||||| || |||||||||| || |||||||||||||    
T  8281135 ttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaaatagtaatcaatgaataaagtagtctca 8281219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 571 - 754
Target Start/End: Complemental strand, 47102821 - 47102640
Alignment:
Q  571 aaagaacaaatcctaatttcta--cccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaa 668  Q
    ||||||||| ||||||||||||  |||||||||||  |||||||||||| | |||||| ||||||| ||||||| |||  |         ||||||||||    
T  47102821 aaagaacaagtcctaatttctatacccatttttcatatcactcacactc-tcaatgaatcctaagaaaaaacacaaaagaaagctttttgatccttccaa 47102723  T
Q  669 taatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 754  Q
    | ||||||| |||||||||||||||||||| |||||||| || | ||||  | || ||| |  |||||||||||||||||||||||    
T  47102722 tgatgaaatctcactacccaaggtgtttac-aatgtttcccaacccaag--agaacctcactacaaagacactcaaccctaaagtt 47102640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 571 - 700
Target Start/End: Original strand, 19073046 - 19073173
Alignment:
Q  571 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 670  Q
    |||||||||  |||||||||||||||||||    |||||||||||||  ||||||||||||||||||||||| ||| ||         |||||||||||     
T  19073046 aaagaacaatacctaatttctacccattttgt--gtcactcacactctcaaatgaaccctaagagaaaacacaaaaggaagctttttgatccttccaatg 19073143  T
Q  671 atgaaatttcactacccaaggtgtttacaa 700  Q
     |||||| |||||| |||||||||||||||    
T  19073144 gtgaaatctcactatccaaggtgtttacaa 19073173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 571 - 700
Target Start/End: Original strand, 19120936 - 19121063
Alignment:
Q  571 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 670  Q
    |||||||||  |||||||||||||||||||    |||||||||||||  ||||||||||||||||||||||| ||| ||         |||||||||||     
T  19120936 aaagaacaatacctaatttctacccattttgt--gtcactcacactctcaaatgaaccctaagagaaaacacaaaaggaagctttttgatccttccaatg 19121033  T
Q  671 atgaaatttcactacccaaggtgtttacaa 700  Q
     |||||| |||||| |||||||||||||||    
T  19121034 gtgaaatctcactatccaaggtgtttacaa 19121063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 337 - 420
Target Start/End: Original strand, 10996772 - 10996856
Alignment:
Q  337 ttgtgaattcaaacaaataatcaaaccaataaa-cttagatgtgtagagtaaagtaagtagtaatcaaagagtaaagtagtctca 420  Q
    |||||||||| |||||| ||||| ||||||||| |||| || |||||||||||| ||||||||||||| || |||||||| ||||    
T  10996772 ttgtgaattcgaacaaacaatcacaccaataaaacttacatatgtagagtaaagaaagtagtaatcaatgaataaagtagcctca 10996856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 572 - 754
Target Start/End: Original strand, 32889558 - 32889734
Alignment:
Q  572 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 671  Q
    |||||||| |||||||||||||||||||||||  |||| ||||||| | |||||| ||||||||||||||| ||| ||         | |||||||||      
T  32889558 aagaacaagtcctaatttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaacac-aaaagaagcttttgaa-ccttccaatgg 32889654  T
Q  672 tgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 754  Q
    |||||| |||||||||||||||||||| |||||||| || | ||  ||| || ||| |  |||||||||||||||||||||||    
T  32889655 tgaaatctcactacccaaggtgtttac-aatgtttcccaaccca--aaaaaacctcactacaaagacactcaaccctaaagtt 32889734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 568 - 642
Target Start/End: Complemental strand, 17345502 - 17345429
Alignment:
Q  568 cacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacac 642  Q
    ||||||||||||| |||||||||||||||||||| | ||||| ||||||| | |||||| | |||||||||||||    
T  17345502 cacaaagaacaaaacctaatttctacccattttttaagtcacccacactc-ttaatgaatcttaagagaaaacac 17345429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 558 - 646
Target Start/End: Complemental strand, 35109531 - 35109443
Alignment:
Q  558 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 646  Q
    |||||||| ||||||||||||||| | ||||||||||||| |||||| ||||| ||||||||  |||||| |||| ||||||| ||||||    
T  35109531 gcttaaaagctcacaaagaacaaaccttaatttctacccaattttcaagtcacacacactca-caatgaatcctacgagaaaatactaaa 35109443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 571 - 646
Target Start/End: Complemental strand, 32736976 - 32736902
Alignment:
Q  571 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 646  Q
    |||||||||| |||||||||||||||||||||| ||||   |||||||  |||||| ||||||||||||| |||||    
T  32736976 aaagaacaaaccctaatttctacccatttttcaagtcatcgacactca-caatgaatcctaagagaaaaccctaaa 32736902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 339 - 403
Target Start/End: Complemental strand, 35109811 - 35109745
Alignment:
Q  339 gtgaattcaaacaaa-taatcaaaccaataaa-cttagatgtgtagagtaaagtaagtagtaatcaa 403  Q
    |||||||| |||||| |||||| ||||||||| ||||||||||||||| |||| |||||||||||||    
T  35109811 gtgaattcgaacaaaataatcacaccaataaaacttagatgtgtagaggaaaggaagtagtaatcaa 35109745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 562 - 603
Target Start/End: Complemental strand, 11032309 - 11032268
Alignment:
Q  562 aaaactcacaaagaacaaatcctaatttctacccatttttca 603  Q
    ||||||||||||||||||| | ||||||||||||||||||||    
T  11032309 aaaactcacaaagaacaaaacataatttctacccatttttca 11032268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 563 - 603
Target Start/End: Complemental strand, 918468 - 918428
Alignment:
Q  563 aaactcacaaagaacaaatcctaatttctacccatttttca 603  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  918468 aaactcacaaagaacaaaccataatttctacccatttttca 918428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 571 - 700
Target Start/End: Complemental strand, 40816793 - 40816668
Alignment:
Q  571 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 670  Q
    |||||||||  |||||||||||| ||||| |   ||||| ||||||| | |||||| ||||||||||||||| ||| ||         |||||||||||     
T  40816793 aaagaacaagacctaatttctactcatttgt---gtcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 40816698  T
Q  671 atgaaatttcactacccaaggtgtttacaa 700  Q
     |||||| ||||||||||||||||||||||    
T  40816697 gtgaaatctcactacccaaggtgtttacaa 40816668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 646
Target Start/End: Original strand, 3019839 - 3019921
Alignment:
Q  563 aaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 646  Q
    ||||||||||||||||  | |||||||||||| |||||||| |||||||| || || ||||||| ||| | |||||||| ||||    
T  3019839 aaactcacaaagaacattttctaatttctaccaatttttcaagtcactcaaaccca-aaatgaatcctgatagaaaacaataaa 3019921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 592 - 707
Target Start/End: Complemental strand, 11031433 - 11031320
Alignment:
Q  592 acccatttttcacgtcactcacactcataaatgaaccctaagagaaaa-cactaaatgannnnnnnnnatccttccaataatgaaatttcactacccaag 690  Q
    |||||||||||| |||| ||||||||| || || | |||||||||||| ||||||| ||         ||||||||||||||||| |  ||||||||| |    
T  11031433 acccatttttcaagtcattcacactcacaa-tgtatcctaagagaaaaacactaaaggaagctttttgatccttccaataatgaact--cactacccacg 11031337  T
Q  691 gtgtttacaaatgtttc 707  Q
    |||||||||||||||||    
T  11031336 gtgtttacaaatgtttc 11031320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 566 - 700
Target Start/End: Original strand, 22819541 - 22819676
Alignment:
Q  566 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagag--aaaacactaaatgannnnnnnnnatcct 663  Q
    ||||||||||| ||  | ||||||||| |||||||||| ||||| ||||||| | |||||| ||||||||  ||||||| ||| ||         |||||    
T  22819541 ctcacaaagaataagacataatttctaaccatttttcaagtcacccacactc-tcaatgaatcctaagagaaaaaacacaaaaggaagctttttgatcct 22819639  T
Q  664 tccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    ||||||  |||||| | ||||||||||||||||||||    
T  22819640 tccaatggtgaaatgtaactacccaaggtgtttacaa 22819676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Original strand, 3281911 - 3281952
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  3281911 atccttccaatggtgaaatctcactacccaaggtgtttacaa 3281952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 618
Target Start/End: Original strand, 10997071 - 10997120
Alignment:
Q  569 acaaagaacaaatcctaatttctacccatttttcacgtcactcacactca 618  Q
    ||||| |||||| |||||||||||||||||||||| ||||| | ||||||    
T  10997071 acaaataacaaaccctaatttctacccatttttcaagtcaccctcactca 10997120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 755
Target Start/End: Original strand, 10997173 - 10997263
Alignment:
Q  669 taatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaat----aaactctcaccaaagacactcaaccctaaagttc 755  Q
    |||||| ||||||||| |||||||||||| ||||||||| || |  |||||||    |||||||||||| | ||||||| || ||||||||    
T  10997173 taatgacatttcactatccaaggtgtttaaaaatgtttcccaacctaagaaattaagaaactctcaccacatacactcagccttaaagttc 10997263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Original strand, 13598604 - 13598645
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  13598604 atccttccaatggtgaaatctcactacccaaggtgtttacaa 13598645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Complemental strand, 13604515 - 13604474
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  13604515 atccttccaatggtgaaatctcactacccaaggtgtttacaa 13604474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Complemental strand, 16124407 - 16124366
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  16124407 atccttccaatggtgaaatctcactacccaaggtgtttacaa 16124366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Complemental strand, 19358734 - 19358693
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  19358734 atccttccaatggtgaaatctcactacccaaggtgtttacaa 19358693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Complemental strand, 19361323 - 19361282
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  19361323 atccttccaatggtgaaatctcactacccaaggtgtttacaa 19361282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Complemental strand, 19366199 - 19366158
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  19366199 atccttccaatggtgaaatctcactacccaaggtgtttacaa 19366158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Complemental strand, 19379963 - 19379922
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  19379963 atccttccaatggtgaaatctcactacccaaggtgtttacaa 19379922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Original strand, 29652017 - 29652058
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  29652017 atccttccaatggtgaaatctcactacccaaggtgtttacaa 29652058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 571 - 754
Target Start/End: Complemental strand, 23402993 - 23402814
Alignment:
Q  571 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 670  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||| ||| ||         ||| |||||||     
T  23402993 aaagaacaagtcctaatttctacccatttttcacatcactcacactc-tcaatgaatcctaagagaaaacacaaaaggaagctttttgatcattccaatg 23402895  T
Q  671 atgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 754  Q
     |||||| |||||||||||||||||||| |||||||| || | ||||  | || ||| |  |||||||||||||||||||||||    
T  23402894 gtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaag--agaacctcactacaaagacactcaaccctaaagtt 23402814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 571 - 754
Target Start/End: Original strand, 20284206 - 20284385
Alignment:
Q  571 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 670  Q
    ||||||||| ||||||||||||||| |||||||  |||| ||||||| | |||||| ||||||||||||||| ||| ||         |||||||||||     
T  20284206 aaagaacaagtcctaatttctacccttttttcatatcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 20284304  T
Q  671 atgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 754  Q
     |||||| |||||||||||||||||||| |||||||| || | ||||  | || ||| |  |||||||||||||||||||||||    
T  20284305 gtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaag--agaacctcactacaaagacactcaaccctaaagtt 20284385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 566 - 700
Target Start/End: Complemental strand, 5817255 - 5817122
Alignment:
Q  566 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 665  Q
    ||||||||||||||| ||||||||||| |||||||||| ||||||||||||| | |||||| ||||||| ||||||| ||| ||         |||||||    
T  5817255 ctcacaaagaacaaaacctaatttctatccatttttcaagtcactcacactc-tcaatgaatcctaagaaaaaacacaaaaggaagctttttgatccttc 5817157  T
Q  666 caataatgaaatttcactacccaaggtgtttacaa 700  Q
    ||||  |||||| ||||| |||||||| |||||||    
T  5817156 caatggtgaaatctcactccccaaggtatttacaa 5817122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 572 - 700
Target Start/End: Complemental strand, 9185153 - 9185026
Alignment:
Q  572 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 671  Q
    |||||||| |||||||||||||||||||||||  |||| ||||||| | |||||| |||||||||||||||  || ||         |||||||||||      
T  9185153 aagaacaagtcctaatttctacccatttttcatatcacccacactc-ttaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatgg 9185055  T
Q  672 tgaaatttcactacccaaggtgtttacaa 700  Q
    |||||| ||||||||||||||||||||||    
T  9185054 tgaaatctcactacccaaggtgtttacaa 9185026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 572 - 700
Target Start/End: Complemental strand, 9189986 - 9189859
Alignment:
Q  572 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 671  Q
    |||||||| |||||||||||||||||||||||  |||| ||||||| | |||||| |||||||||||||||  || ||         |||||||||||      
T  9189986 aagaacaagtcctaatttctacccatttttcatatcacccacactc-ttaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatgg 9189888  T
Q  672 tgaaatttcactacccaaggtgtttacaa 700  Q
    |||||| ||||||||||||||||||||||    
T  9189887 tgaaatctcactacccaaggtgtttacaa 9189859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 572 - 700
Target Start/End: Original strand, 2580508 - 2580635
Alignment:
Q  572 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 671  Q
    |||||||| ||||| |||||||||||||||||  |||| ||||||| | |||||| ||||||||||||||| ||| ||         |||||| ||||      
T  2580508 aagaacaagtcctagtttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagctttttgatcctttcaatgg 2580606  T
Q  672 tgaaatttcactacccaaggtgtttacaa 700  Q
    |||||| ||||||||||||||||||||||    
T  2580607 tgaaatctcactacccaaggtgtttacaa 2580635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 688 - 758
Target Start/End: Original strand, 27984678 - 27984747
Alignment:
Q  688 aaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttctct 758  Q
    ||||| ||||||||| ||||||||| ||||||| ||||||||||||||||||| ||  |||||||||||||    
T  27984678 aaggtttttacaaatatttctcatcccaagaaa-aaactctcaccaaagacacccagtcctaaagttctct 27984747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 659 - 754
Target Start/End: Complemental strand, 46516198 - 46516106
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 754  Q
    |||||||||||  |||||| |||||||||||||||||||| |||||||| || ||||||| ||   ||| |  |||||||||||||||||||||||    
T  46516198 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaactcaagagat--cctcactacaaagacactcaaccctaaagtt 46516106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 571 - 700
Target Start/End: Complemental strand, 9235562 - 9235434
Alignment:
Q  571 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 670  Q
    ||||||||| |||||||||||||||||||||||  |||| | ||||| | || ||| ||||||||||||||| ||| ||         |||||| ||||     
T  9235562 aaagaacaagtcctaatttctacccatttttcatatcacccgcactc-tcaacgaatcctaagagaaaacacaaaaggaagctttttgatccttgcaatg 9235464  T
Q  671 atgaaatttcactacccaaggtgtttacaa 700  Q
     |||||| |||||| |||||||||||||||    
T  9235463 gtgaaatatcactatccaaggtgtttacaa 9235434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 572 - 700
Target Start/End: Original strand, 29159922 - 29160050
Alignment:
Q  572 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 670  Q
    ||||||||  ||||||||||||||||||||   ||||| ||| |||| || ||||| ||||||||||||||| ||| ||         |||||||||||     
T  29159922 aagaacaagacctaatttctacccatttttgt-gtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 29160020  T
Q  671 atgaaatttcactacccaaggtgtttacaa 700  Q
     |||||| ||||||||||||||||||||||    
T  29160021 ttgaaatctcactacccaaggtgtttacaa 29160050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 468 - 512
Target Start/End: Complemental strand, 28617378 - 28617334
Alignment:
Q  468 cacaagcatattcaaagcaacaaagataattaagagaggaagaaa 512  Q
    |||||||||||||||||||||||||||||  |||| |||||||||    
T  28617378 cacaagcatattcaaagcaacaaagataagcaagaaaggaagaaa 28617334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 566 - 600
Target Start/End: Original strand, 24526017 - 24526051
Alignment:
Q  566 ctcacaaagaacaaatcctaatttctacccatttt 600  Q
    ||||||||||||||| |||||||||||||||||||    
T  24526017 ctcacaaagaacaaaacctaatttctacccatttt 24526051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 558 - 603
Target Start/End: Complemental strand, 28617219 - 28617173
Alignment:
Q  558 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttca 603  Q
    |||||||| ||||||||||||||| ||||||||||||| ||||||||    
T  28617219 gcttaaaagctcacaaagaacaaaacctaatttctacctatttttca 28617173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Original strand, 56153 - 56194
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  56153 atccttccaatggtgaaatctcactacccaaggtgtttacaa 56194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Original strand, 2479540 - 2479581
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  2479540 atccttccaatggtgaaatctcactacccaaggtgtttacaa 2479581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 564 - 621
Target Start/End: Complemental strand, 4162756 - 4162699
Alignment:
Q  564 aactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataa 621  Q
    ||||||||||||||||||| ||||||||||  |||||||| |||| ||| || |||||    
T  4162756 aactcacaaagaacaaatcataatttctacttatttttcaagtcattcaaacccataa 4162699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Complemental strand, 4796561 - 4796520
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  4796561 atccttccaatggtgaaatctcactacccaaggtgtttacaa 4796520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Original strand, 21640014 - 21640055
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  21640014 atccttccaatggtgaaatctcactacccaaggtgtttacaa 21640055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Original strand, 21646212 - 21646253
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  21646212 atccttccaatggtgaaatctcactacccaaggtgtttacaa 21646253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Original strand, 21983490 - 21983531
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  21983490 atccttccaatggtgaaatctcactacccaaggtgtttacaa 21983531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 567 - 750
Target Start/End: Complemental strand, 31513314 - 31513135
Alignment:
Q  567 tcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttcc 666  Q
    |||||||||||||| ||||||||||||| |||||  | ||||  |||||||| || |||| ||||||||||||||||||| ||         ||||||||    
T  31513314 tcacaaagaacaaa-cctaatttctacctattttcga-gtcatccacactcacaa-tgaatcctaagagaaaacactaaa-gatttttttttatccttcc 31513219  T
Q  667 aataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaa 750  Q
      ||||||||| ||||||  |||||||||||||||||||||||| | ||||||||||||||||| | ||||||||| |||||||    
T  31513218 tctaatgaaatctcactattcaaggtgtttacaaatgtttctcaacccaagaaataaactctcatcgaagacactcgaccctaa 31513135  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 566 - 758
Target Start/End: Original strand, 3051232 - 3051420
Alignment:
Q  566 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 665  Q
    ||||||||||||||| | |||||||||||||||||||| |||||| |||||| | |||||| ||||||||||| ||| ||| ||         ||| |||    
T  3051232 ctcacaaagaacaaaacttaatttctacccatttttcatgtcacttacactc-tcaatgaatcctaagagaaagcacaaaaggaagctttttgatctttc 3051330  T
Q  666 caataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttctct 758  Q
    ||||  |||||| |||||||||||| ||||||| |||||||| || ||||||  | || | | |  |||||||||||||||||||||||||||    
T  3051331 caatggtgaaatctcactacccaagatgtttac-aatgtttcccaactcaag--agaaccccactacaaagacactcaaccctaaagttctct 3051420  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 572 - 700
Target Start/End: Complemental strand, 19752372 - 19752246
Alignment:
Q  572 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 671  Q
    |||||||| |||||||||||||||||||||||  |||| ||||||| | |||||| ||||||||||||||| ||| ||         ||||||||||| |    
T  19752372 aagaacaagtcctaatttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaacac-aaaggaagctttttgatccttccaatga 19752275  T
Q  672 tgaaatttcactacccaaggtgtttacaa 700  Q
    |||||| ||||||||||||||||||||||    
T  19752274 tgaaatctcactacccaaggtgtttacaa 19752246  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 573 - 756
Target Start/End: Complemental strand, 8863604 - 8863425
Alignment:
Q  573 agaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataat 672  Q
    |||||||| | |||||||||||||||||||| ||||||||||| |||||||||| |  ||||||||||| |||| ||         |||||   ||||||    
T  8863604 agaacaaaccttaatttctacccatttttcaagtcactcacacacataaatgaatctaaagagaaaacattaaagga-agattttaatcct---aataat 8863509  T
Q  673 gaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttct 756  Q
    ||||| |||||| |||| |||||||||| ||||||  | |  |||||||||| | ||||| ||||||||||| | |||||||||    
T  8863508 gaaatctcactaaccaatgtgtttacaactgtttcctagcctaagaaataaattttcaccgaagacactcaaacttaaagttct 8863425  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 568 - 641
Target Start/End: Complemental strand, 9054820 - 9054748
Alignment:
Q  568 cacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaaca 641  Q
    |||||||||||||  ||||||||||||||||||||| ||||||||||||| | |||||| ||||||||||||||    
T  9054820 cacaaagaacaaaatctaatttctacccatttttcaagtcactcacactc-tcaatgaatcctaagagaaaaca 9054748  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 566 - 700
Target Start/End: Complemental strand, 7493158 - 7493025
Alignment:
Q  566 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 665  Q
    |||||| |||||||| |||||||||||||  ||||||| ||||| ||||||| | ||| || ||||||| ||||||||||| ||         |||||||    
T  7493158 ctcacacagaacaaaacctaatttctacctgtttttcaagtcacccacactc-tcaataaatcctaagaaaaaacactaaaggaagctttttgatccttc 7493060  T
Q  666 caataatgaaatttcactacccaaggtgtttacaa 700  Q
     |||  |||||| ||||||||||||||||||||||    
T  7493059 taattgtgaaatctcactacccaaggtgtttacaa 7493025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 566 - 615
Target Start/End: Original strand, 6813795 - 6813845
Alignment:
Q  566 ctcacaaagaacaaatcctaattt-ctacccatttttcacgtcactcacac 615  Q
    ||||||||||||||| |||||||| |||||||||||||| |||||||||||    
T  6813795 ctcacaaagaacaaaacctaattttctacccatttttcaagtcactcacac 6813845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 659 - 700
Target Start/End: Complemental strand, 19175647 - 19175606
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  19175647 atccttccaatagtgaaatctcactacccaaggtgtttacaa 19175606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 659 - 754
Target Start/End: Original strand, 7412544 - 7412636
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 754  Q
    |||||| ||||  |||||| |||||||||||||||||||||| |||||| || | ||||| ||   |||||  |||||||||||||||||||||||    
T  7412544 atcctttcaatggtgaaatctcactacccaaggtgtttacaa-tgtttcccaacccaagagatc--ctctctacaaagacactcaaccctaaagtt 7412636  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 572 - 700
Target Start/End: Complemental strand, 26403208 - 26403081
Alignment:
Q  572 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 670  Q
    ||||||||  |||||||||||||||||||    ||||||||| |||| || ||||| | ||||||||||||| ||| ||         |||||||||||     
T  26403208 aagaacaagacctaatttctacccattttgt--gtcactcactctcacaatatgaatcataagagaaaacacaaaaggaagctttttgatccttccaatg 26403111  T
Q  671 atgaaatttcactacccaaggtgtttacaa 700  Q
     |||||| ||||||||||||||||||||||    
T  26403110 gtgaaatctcactacccaaggtgtttacaa 26403081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 566 - 600
Target Start/End: Complemental strand, 30291654 - 30291620
Alignment:
Q  566 ctcacaaagaacaaatcctaatttctacccatttt 600  Q
    ||||||||||||||| |||||||||||||||||||    
T  30291654 ctcacaaagaacaaaacctaatttctacccatttt 30291620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 646
Target Start/End: Complemental strand, 5990555 - 5990467
Alignment:
Q  558 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 646  Q
    |||||||| |||||||||||||   ||| ||||  |||||||||||| ||||| ||||||  | |||||| |||||||||||||||||||    
T  5990555 gcttaaaagctcacaaagaacacgacctcattttcacccatttttcaagtcacccacactt-tcaatgaatcctaagagaaaacactaaa 5990467  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 725 - 754
Target Start/End: Original strand, 11712237 - 11712266
Alignment:
Q  725 ctctcaccaaagacactcaaccctaaagtt 754  Q
    ||||||||||||||||||||||||||||||    
T  11712237 ctctcaccaaagacactcaaccctaaagtt 11712266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Original strand, 26288096 - 26288137
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  26288096 atccttccaatggtgaaatctcactacccaaggtgtttacaa 26288137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Original strand, 26301353 - 26301394
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  26301353 atccttccaatggtgaaatctcactacccaaggtgtttacaa 26301394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Original strand, 26313347 - 26313388
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  26313347 atccttccaatggtgaaatctcactacccaaggtgtttacaa 26313388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Complemental strand, 31071120 - 31071079
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  31071120 atccttccaatggtgaaatctcactacccaaggtgtttacaa 31071079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 567 - 755
Target Start/End: Complemental strand, 30518112 - 30517922
Alignment:
Q  567 tcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttcc 666  Q
    |||||||||||||| | ||||||||||| |||||||| || || |||||||| ||||||| | || |||||||||||||| ||         ||||||||    
T  30518112 tcacaaagaacaaaccttaatttctacctatttttcaagttacccacactcacaaatgaatctta-gagaaaacactaaaggaagtttttg-atccttcc 30518015  T
Q  667 aataatgaaat----ttcactacccaaggtgtttacaaatgttt-ctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 755  Q
    |||||||||||     |||||||||||  | ||||||||||||| || |||| ||||||||||||||||||||||||||||||| |||||||||    
T  30518014 aataatgaaatctcactcactacccaaaatatttacaaatgtttcctaatct-aagaaataaactctcaccaaagacactcaactctaaagttc 30517922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 562 - 707
Target Start/End: Complemental strand, 33721548 - 33721404
Alignment:
Q  562 aaaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatc 661  Q
    |||||||| |||||||||| ||||||||   ||||||||| | ||||| ||||||| |||||||| ||||||||||||||||||| |          |||    
T  33721548 aaaactcataaagaacaaaacctaattttcccccattttttaggtcacacacactcctaaatgaatcctaagagaaaacactaaagggagctttttcatc 33721449  T
Q  662 cttccaataatgaaatttcactacccaaggtgtttacaaatgtttc 707  Q
     ||||||||||||||| |||||| | ||||||||||||||||||||    
T  33721448 attccaataatgaaatctcacta-caaaggtgtttacaaatgtttc 33721404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 572 - 700
Target Start/End: Original strand, 31936695 - 31936820
Alignment:
Q  572 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 671  Q
    ||||||||||||||||||||||||||||||||  |||| ||||||| | |||||| |||||||||||||||  || ||         |||||||||||      
T  31936695 aagaacaaatcctaatttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaacac--aaagaagctttttgatccttccaatgg 31936791  T
Q  672 tgaaatttcactacccaaggtgtttacaa 700  Q
    |||||| ||||||||||||||||||||||    
T  31936792 tgaaatctcactacccaaggtgtttacaa 31936820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 566 - 700
Target Start/End: Original strand, 14521785 - 14521919
Alignment:
Q  566 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 665  Q
    ||||||||||||| | |||||||||||| ||||||||| ||||| ||||||| | ||| || |||||||||||||| |||| ||         |||||||    
T  14521785 ctcacaaagaacacaacctaatttctacacatttttcatgtcacccacactc-tcaataaatcctaagagaaaacattaaaggaagattttttatccttc 14521883  T
Q  666 caataatgaaatt-tcactacccaaggtgtttacaa 700  Q
    ||||  ||||||| ||||||||||||||||||||||    
T  14521884 caatggtgaaattctcactacccaaggtgtttacaa 14521919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 582 - 754
Target Start/End: Complemental strand, 24435939 - 24435773
Alignment:
Q  582 cctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataatgaaatttca 681  Q
    |||||||||||||||||||| |  |||| |||| |||||| |||| ||||||||||||||| ||| ||         |||||||||||  |||||| |||    
T  24435939 cctaatttctacccattttt-atatcacccacattcataa-tgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctca 24435842  T
Q  682 ctacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 754  Q
    ||||||||||||||||| |||||||| || ||||||  | || ||| || |||||||||||||||||||||||    
T  24435841 ctacccaaggtgtttac-aatgtttcccaactcaag--agaacctcaca-caaagacactcaaccctaaagtt 24435773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 571 - 754
Target Start/End: Original strand, 31979631 - 31979808
Alignment:
Q  571 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 670  Q
    |||||||||  ||||||||||||||||||||   ||||| ||||||| | |||||| ||||||||||||||| ||| ||         |||||||||||     
T  31979631 aaagaacaagacctaatttctacccatttttgt-gtcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagcttttg-atccttccaatg 31979727  T
Q  671 atgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 754  Q
     |||||| |||||||||||||||||||| ||||||||||| | ||  ||| || ||| |  |||||||||||||||||||||||    
T  31979728 gtgaaatctcactacccaaggtgtttac-aatgtttctcaaccca--aaagaacctcactacaaagacactcaaccctaaagtt 31979808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 571 - 700
Target Start/End: Complemental strand, 21801323 - 21801196
Alignment:
Q  571 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 670  Q
    |||||||||  | |||||||||||||||||    ||||| |||||||  ||||||||||||||||||||||| ||| ||         |||||||||||     
T  21801323 aaagaacaagacttaatttctacccattttgt--gtcacccacactctcaaatgaaccctaagagaaaacacaaaaggaagctttttgatccttccaatg 21801226  T
Q  671 atgaaatttcactacccaaggtgtttacaa 700  Q
     |||||| ||||||||||||||||||||||    
T  21801225 ttgaaatctcactacccaaggtgtttacaa 21801196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 332 - 418
Target Start/End: Original strand, 98967 - 99055
Alignment:
Q  332 ttttattgtgaattcaaacaaataa-tcaaaccaataaa-cttagatgtgtagagtaaagtaagtagtaatcaaagagtaaagtagtct 418  Q
    ||||||||||||||| | ||||||| |||  |||||||| |||| | |||| |||||||| ||||||||||||| ||| ||||||||||    
T  98967 ttttattgtgaattcgagcaaataaatcacgccaataaaacttaaacgtgtggagtaaaggaagtagtaatcaatgagcaaagtagtct 99055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 566 - 600
Target Start/End: Complemental strand, 16569081 - 16569047
Alignment:
Q  566 ctcacaaagaacaaatcctaatttctacccatttt 600  Q
    ||||||||||||||| |||||||||||||||||||    
T  16569081 ctcacaaagaacaaaacctaatttctacccatttt 16569047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 662 - 700
Target Start/End: Original strand, 21356244 - 21356282
Alignment:
Q  662 cttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  21356244 cttccaatgatgaaatctcactacccaaggtgtttacaa 21356282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 663 - 700
Target Start/End: Complemental strand, 5572132 - 5572095
Alignment:
Q  663 ttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  5572132 ttccaatagtgaaatctcactacccaaggtgtttacaa 5572095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Complemental strand, 5757371 - 5757330
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  5757371 atccttccaatggtgaaatctcactacccaaggtgtttacaa 5757330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Original strand, 18233050 - 18233091
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  18233050 atccttccaatggtgaaatctcactacccaaggtgtttacaa 18233091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Original strand, 22963903 - 22963944
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  22963903 atccttccaatggtgaaatctcactacccaaggtgtttacaa 22963944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Complemental strand, 23824490 - 23824449
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  23824490 atccttccaatggtgaaatctcactacccaaggtgtttacaa 23824449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 566 - 755
Target Start/End: Complemental strand, 102479 - 102292
Alignment:
Q  566 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 665  Q
    |||||||| |||||| |||||||||||||||||||||| ||||| ||||||||| ||| ||  | |||||||||||||||| ||         |||||||    
T  102479 ctcacaaaaaacaaaccctaatttctacccatttttcaagtcacacacactcat-aataaattcgaagagaaaacactaaaggatgctttttgatccttc 102381  T
Q  666 caataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 755  Q
    |  |||| |||| | |||  ||||||||||| |||||||||  || | | ||||||||| |||||||||| ||||||||| |||||||||    
T  102380 ctctaataaaatcttacttaccaaggtgttttcaaatgttttccaaccctagaaataaaatctcaccaaa-acactcaacactaaagttc 102292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 8e-20; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 562 - 755
Target Start/End: Original strand, 2630339 - 2630530
Alignment:
Q  562 aaaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatc 661  Q
    ||||| ||||||||||||| |||||||| ||  ||||||||| ||||| | ||||||  |||||| ||||||||||||||||||| ||         |||    
T  2630339 aaaacacacaaagaacaaaacctaatttttatacatttttcaagtcaccctcactca-caatgaatcctaagagaaaacactaaaggaagctttttgatc 2630437  T
Q  662 cttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 755  Q
    ||| ||||  ||||||||||||| | ||| ||||| ||||||||||| | |  || |||||||||||||||||| || ||||||| ||||||||    
T  2630438 ctttcaatggtgaaatttcactatcaaagatgtttgcaaatgtttcttaaccaaataaataaactctcaccaaa-actctcaaccataaagttc 2630530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 572 - 754
Target Start/End: Complemental strand, 31300574 - 31300396
Alignment:
Q  572 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 671  Q
    |||||||| ||||||||||||||||||| |||  |||| ||||||| | |||||| ||||||||||||||| ||| ||         |||||||||||      
T  31300574 aagaacaagtcctaatttctacccatttctcatatcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagccttttgatccttccaatgg 31300476  T
Q  672 tgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 754  Q
    |||||| |||||||||||||||||||| ||||||||||| | ||||  | || ||| |  ||||||||||||||| |||||||    
T  31300475 tgaaatctcactacccaaggtgtttac-aatgtttctcaacccaag--agaacctcactacaaagacactcaaccttaaagtt 31300396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 571 - 700
Target Start/End: Original strand, 28832374 - 28832502
Alignment:
Q  571 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 670  Q
    ||||||||| | |||||||||||||||||||||  |||| ||||||| | |||||| ||||||||||||||| ||| ||         |||||||||||     
T  28832374 aaagaacaagttctaatttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 28832472  T
Q  671 atgaaatttcactacccaaggtgtttacaa 700  Q
     |||||| ||||||||||||||||||||||    
T  28832473 gtgaaatctcactacccaaggtgtttacaa 28832502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 558 - 638
Target Start/End: Complemental strand, 33030934 - 33030854
Alignment:
Q  558 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaa 638  Q
    |||||||| ||||||||||||||| | |||||||||||||||||||| ||||||||||||| | |||||| |||||||||||    
T  33030934 gcttaaaagctcacaaagaacaaaacataatttctacccatttttcaagtcactcacactc-tcaatgaatcctaagagaaa 33030854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 563 - 642
Target Start/End: Original strand, 6741961 - 6742039
Alignment:
Q  563 aaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacac 642  Q
    |||||||||||||||||| |||||||||||| ||||||||| ||||| ||||||| | |||||| ||||||| |||||||    
T  6741961 aaactcacaaagaacaaaacctaatttctactcatttttcaagtcacccacactc-tcaatgaatcctaagaaaaaacac 6742039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 582 - 700
Target Start/End: Complemental strand, 11181800 - 11181684
Alignment:
Q  582 cctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataatgaaatttca 681  Q
    ||||||||||||||||||| || ||||| |||||||| || |||| ||||||||||||||| ||| ||         |||||||||||  ||||||||||    
T  11181800 cctaatttctacccatttt-catgtcacccacactcacaa-tgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatttca 11181703  T
Q  682 ctacccaaggtgtttacaa 700  Q
    |||||||||||||||||||    
T  11181702 ctacccaaggtgtttacaa 11181684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 355 - 420
Target Start/End: Original strand, 34842436 - 34842500
Alignment:
Q  355 aatcaaaccaataaacttagatgtgtagagtaaagtaagtagtaatcaaagagtaaagtagtctca 420  Q
    ||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||| ||||    
T  34842436 aatcacaccaataaacttagatgtgtggagtaaaggaagtagtaatc-aagagtaaagtagcctca 34842500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 567 - 641
Target Start/End: Original strand, 3651613 - 3651686
Alignment:
Q  567 tcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaaca 641  Q
    |||||||||||||| |||||||||||||||||||||| |||||||| ||  || |||||| ||||||| ||||||    
T  3651613 tcacaaagaacaaaccctaatttctacccatttttcaagtcactcaaacctat-aatgaatcctaagataaaaca 3651686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 571 - 696
Target Start/End: Complemental strand, 42127390 - 42127266
Alignment:
Q  571 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 670  Q
    ||||||||| ||||| |||||||||||||||||  |||| ||||||| | |||||| ||||||||||||||| |||  |         |||||||||||     
T  42127390 aaagaacaagtcctactttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaacacaaaagaaagctttttgatccttccaatg 42127292  T
Q  671 atgaaatttcactacccaaggtgttt 696  Q
     |||||| ||||||||||||||||||    
T  42127291 gtgaaatctcactacccaaggtgttt 42127266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 684 - 751
Target Start/End: Complemental strand, 3325885 - 3325821
Alignment:
Q  684 acccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaa 751  Q
    ||||||||||||||||||||||||||| |||||||    ||| |||||||||||||||| ||||||||    
T  3325885 acccaaggtgtttacaaatgtttctcaactcaaga---gaacactcaccaaagacactcgaccctaaa 3325821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 659 - 754
Target Start/End: Original strand, 30900070 - 30900161
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 754  Q
    ||||||||  ||||||||| ||||||||||||||||||| |||||||   || ||||||  |||| | ||||| ||| ||||||||||||||||||    
T  30900070 atccttcctctaatgaaatctcactacccaaggtgtttataaatgtt--ccaactcaag--ataacccctcacaaaatacactcaaccctaaagtt 30900161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 646
Target Start/End: Original strand, 5611255 - 5611333
Alignment:
Q  567 tcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 646  Q
    ||||||||||||||  || ||||||| |||||||| | ||||   ||||||||||||||  |||||||||||||||||||    
T  5611255 tcacaaagaacaaaatcttatttctatccatttttaa-gtcataaacactcataaatgattcctaagagaaaacactaaa 5611333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 572 - 700
Target Start/End: Original strand, 10281870 - 10281997
Alignment:
Q  572 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 670  Q
    ||||||||  |||||||||||||||||||    ||||| |||||||| || ||||| ||||||||||||||| |||  |         |||||||||||     
T  10281870 aagaacaagacctaatttctacccattttgt--gtcacccacactcacaatatgaatcctaagagaaaacacaaaagaaagctttttgatccttccaatg 10281967  T
Q  671 atgaaatttcactacccaaggtgtttacaa 700  Q
     |||||| ||||||||||||||||||||||    
T  10281968 gtgaaatctcactacccaaggtgtttacaa 10281997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 572 - 700
Target Start/End: Complemental strand, 17003938 - 17003811
Alignment:
Q  572 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 670  Q
    ||||||||  ||||||||||||||||||   |  |||||||| |||| || ||||| ||||||||||||||| ||| ||         |||||||||||     
T  17003938 aagaacaagacctaatttctacccattta--atttcactcactctcacaatatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 17003841  T
Q  671 atgaaatttcactacccaaggtgtttacaa 700  Q
     |||||| ||||||||||||||||||||||    
T  17003840 gtgaaatctcactacccaaggtgtttacaa 17003811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Complemental strand, 9353225 - 9353184
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  9353225 atccttccaatggtgaaatctcactacccaaggtgtttacaa 9353184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Complemental strand, 11916865 - 11916824
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  11916865 atccttccaatggtgaaatctcactacccaaggtgtttacaa 11916824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 563 - 600
Target Start/End: Complemental strand, 31183022 - 31182986
Alignment:
Q  563 aaactcacaaagaacaaatcctaatttctacccatttt 600  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  31183022 aaactcacaaagaacaa-tcctaatttctacccatttt 31182986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Complemental strand, 36932241 - 36932200
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  36932241 atccttccaatggtgaaatctcactacccaaggtgtttacaa 36932200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Original strand, 38219604 - 38219645
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  38219604 atccttccaatggtgaaatctcactacccaaggtgtttacaa 38219645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 659 - 755
Target Start/End: Complemental strand, 8310 - 8217
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 755  Q
    |||||||||||  |||||| |||||||||||||||||||| |||||||| || | ||||| ||   ||| |  ||||||||||||||||||||||||    
T  8310 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaagagat--cctcactacaaagacactcaaccctaaagttc 8217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Original strand, 10935 - 10976
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  10935 atccttccaatggtgaaatctcactacccaaggtgtttacaa 10976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Original strand, 45402 - 45443
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  45402 atccttccaatggtgaaatctcactacccaaggtgtttacaa 45443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Complemental strand, 36725 - 36684
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  36725 atccttccaatggtgaaatctcactacccaaggtgtttacaa 36684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Complemental strand, 43854 - 43813
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  43854 atccttccaatggtgaaatctcactacccaaggtgtttacaa 43813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 562 - 646
Target Start/End: Complemental strand, 15977 - 15895
Alignment:
Q  562 aaaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 646  Q
    ||||| ||||||||||||| ||||||||   ||||||||||  ||||  ||||||||||||||||  |||| |||| ||||||||    
T  15977 aaaacccacaaagaacaaaacctaattttcccccatttttctggtca--cacactcataaatgaattctaaaagaagacactaaa 15895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 337 - 409
Target Start/End: Complemental strand, 16263 - 16190
Alignment:
Q  337 ttgtgaattcaaacaaataatcaaaccaataaa-cttagatgtgtagagtaaagtaagtagtaatcaaagagta 409  Q
    |||||||||  ||| |||||| | ||||||||| ||||||||||| ||| |||| ||||||||||||| |||||    
T  16263 ttgtgaatttgaactaataattacaccaataaaacttagatgtgtcgagcaaaggaagtagtaatcaatgagta 16190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Original strand, 5889 - 5930
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  5889 atccttccaatggtgaaatctcactacccaaggtgtttacaa 5930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 700
Target Start/End: Complemental strand, 133172 - 133131
Alignment:
Q  659 atccttccaataatgaaatttcactacccaaggtgtttacaa 700  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  133172 atccttccaatggtgaaatctcactacccaaggtgtttacaa 133131  T

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