View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4978_low_10 (Length: 461)
Name: NF4978_low_10
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 36124209 - 36123997
Alignment:
| Q |
17 |
atgaattcgcttgtgaaactatagtcttaatattgcatggtttcctagtatcttgattgtaacaaggttacttctcatgctttcacatgcaccttgttgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36124209 |
atgaattcgcttgtgaaactatagtcttaatattgcatggtttcctagtatcttgagtgtaacaaggttacttctcatgctttcacatgcaccttgttgt |
36124110 |
T |
|
| Q |
117 |
cattcttcatatattaaggtccgtca-tccccttgatttcttccatactggttcctagttaactacttaaggttgactgattacacttaaatcagtgttg |
215 |
Q |
| |
|
|||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
36124109 |
cattcttcatatattaaggtccgtcatttcctttgatttcttccatactggttcctagttaactacttaaggttgactgattacacggaaataagtgttg |
36124010 |
T |
|
| Q |
216 |
ggaacttctcatg |
228 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
36124009 |
ggaacttgtcatg |
36123997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 261 - 414
Target Start/End: Complemental strand, 36124000 - 36123848
Alignment:
| Q |
261 |
catgtcatgaacaaagtactttaaaattttctctttacgtgcttgccttacatgtactatcgatcgagtgtcagttcctgtgattgtcttgcatatttat |
360 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36124000 |
catgtcatgaacaaagtactttcaa-ttttctctttacgtgcttgccttacatgtactatcgatcgagtgtcagttcatgtgattgtcttgcatatttat |
36123902 |
T |
|
| Q |
361 |
gtctactatcaattctcattgtcttccgtgtgtttgatttggttattggtttca |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36123901 |
gtctactatcaattctcattgtcttccgtgtgtttgatttggttattggtttca |
36123848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University