View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4978_low_15 (Length: 337)

Name: NF4978_low_15
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4978_low_15
NF4978_low_15
[»] chr1 (4 HSPs)
chr1 (179-336)||(2758230-2758387)
chr1 (1-116)||(2758050-2758166)
chr1 (246-322)||(28111538-28111614)
chr1 (246-322)||(16948930-16949006)
[»] chr7 (3 HSPs)
chr7 (246-322)||(25032776-25032852)
chr7 (246-284)||(3404070-3404108)
chr7 (179-245)||(25032890-25032956)
[»] chr5 (5 HSPs)
chr5 (246-321)||(25815279-25815354)
chr5 (251-322)||(36409756-36409827)
chr5 (246-297)||(10912158-10912209)
chr5 (246-322)||(21178372-21178451)
chr5 (246-296)||(11857393-11857443)
[»] chr8 (4 HSPs)
chr8 (246-307)||(29608676-29608737)
chr8 (246-322)||(34108872-34108946)
chr8 (266-316)||(3693445-3693495)
chr8 (246-289)||(32323410-32323453)
[»] chr4 (1 HSPs)
chr4 (246-311)||(36690296-36690361)
[»] chr3 (3 HSPs)
chr3 (246-322)||(11500540-11500615)
chr3 (246-322)||(36644724-36644799)
chr3 (247-322)||(22516775-22516850)
[»] chr2 (2 HSPs)
chr2 (247-322)||(15545133-15545208)
chr2 (251-303)||(11197458-11197510)


Alignment Details
Target: chr1 (Bit Score: 114; Significance: 9e-58; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 179 - 336
Target Start/End: Original strand, 2758230 - 2758387
Alignment:
Q  179 ctgtgaactttatatgatattgtataatgaacnnnnnnnngactcaatttacttagccgtgaacattcaatgaaaaataaagtaaaattttgtttgcaat 278  Q
    ||||||||||||||||||||||||||||||||        |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  2758230 ctgtgaactttatatgatattgtataatgaacttttttttgactcaatttacttagccttgaacattcaatgaaaaataaagtaaagttttgtttgcaat 2758329  T
Q  279 ttacaaaagaacattaattcttaacgaatatcaatttacgattcttatgttgtaattt 336  Q
    ||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||    
T  2758330 ttacaaaagaacattaattcttaacaaatatcaatttatgatttttatgttgtaattt 2758387  T

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Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 2758050 - 2758166
Alignment:
Q  1 aaacgatgaagttcatcgaaagagagtgctgtacatgcaaattattctttt-attgaggtgaatgagagatataaaagattagagatggggaccaacaga 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |    
T  2758050 aaacgatgaagttcatcgaaagagagtgctgtacatgcaaattattctttttattgaggtgaatgagagatataaaagattagagatggggatcaacata 2758149  T
Q  100 gaccatagtcctcccaa 116  Q
    |||||||||||||||||    
T  2758150 gaccatagtcctcccaa 2758166  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 246 - 322
Target Start/End: Original strand, 28111538 - 28111614
Alignment:
Q  246 caatgaaaaataaagtaaaattttgtttgcaatttacaaaagaacattaattcttaacgaatatcaatttacgattc 322  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||  ||||||||||| |||||| |||||    
T  28111538 caatgaaaaataaagtaaagttttgtttgcaatttacaaaagaatattaatctttaacgaatattaatttatgattc 28111614  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 322
Target Start/End: Original strand, 16948930 - 16949006
Alignment:
Q  246 caatgaaaaataaagtaaaattttgtttgcaatttacaaaagaacattaattcttaacgaatatcaatttacgattc 322  Q
    ||||||||||| ||||||  |||||||| |||||||||||||||| ||||   |||||||||||||||||| |||||    
T  16948930 caatgaaaaattaagtaatgttttgtttccaatttacaaaagaactttaaacattaacgaatatcaatttatgattc 16949006  T

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Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 246 - 322
Target Start/End: Complemental strand, 25032852 - 25032776
Alignment:
Q  246 caatgaaaaataaagtaaaattttgtttgcaatttacaaaagaacattaattcttaacgaatatcaatttacgattc 322  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||| |||| |||||    
T  25032852 caatgaaaaataaagtaaacttttgtttgcaatttgcaaaagaacattaatccttaacgaatatcagtttatgattc 25032776  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 3404070 - 3404108
Alignment:
Q  246 caatgaaaaataaagtaaaattttgtttgcaatttacaa 284  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3404070 caatgaaaaataaagtaaaattttgtttgcaatttacaa 3404108  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 25032956 - 25032890
Alignment:
Q  179 ctgtgaactttatatgatattgtataatgaacnnnnnnnngactcaatttacttagccgtgaacatt 245  Q
    ||||||||||||||||||||||||||||||||        |||||||||||||||||| ||| ||||    
T  25032956 ctgtgaactttatatgatattgtataatgaacttttttttgactcaatttacttagccttgagcatt 25032890  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 246 - 321
Target Start/End: Original strand, 25815279 - 25815354
Alignment:
Q  246 caatgaaaaataaagtaaaattttgtttgcaatttacaaaagaacattaattcttaacgaatatcaatttacgatt 321  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||| ||||    
T  25815279 caataaaaaataaagtaaaattttgtttgcactttacaaaagaacattaatccttaacgaatatccatttatgatt 25815354  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 251 - 322
Target Start/End: Original strand, 36409756 - 36409827
Alignment:
Q  251 aaaaataaagtaaaattttgtttgcaatttacaaaagaacattaattcttaacgaatatcaatttacgattc 322  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||    
T  36409756 aaaaataaagtaaagttttgtttgcaatttacaaaagaacattaatccttaacgaaaatcaatttatgattc 36409827  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 246 - 297
Target Start/End: Original strand, 10912158 - 10912209
Alignment:
Q  246 caatgaaaaataaagtaaaattttgtttgcaatttacaaaagaacattaatt 297  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  10912158 caatgaaaaataaagtaaagttttgtttgcaatttacaaaagaatattaatt 10912209  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 322
Target Start/End: Original strand, 21178372 - 21178451
Alignment:
Q  246 caatgaaaaataaagtaaaattttgtttgcaatt---tacaaaagaacattaattcttaacgaatatcaatttacgattc 322  Q
    ||||||||| ||||||||||||||||||||||||   |||||| ||| |||||| |||||||||||| || ||| |||||    
T  21178372 caatgaaaactaaagtaaaattttgtttgcaatttactacaaatgaatattaatccttaacgaatattaacttatgattc 21178451  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 11857393 - 11857443
Alignment:
Q  246 caatgaaaaataaagtaaaattttgtttgcaatttacaaaagaacattaat 296  Q
    ||||| ||||||||||||  ||||||||||||||||||||| || ||||||    
T  11857393 caatggaaaataaagtaacgttttgtttgcaatttacaaaaaaatattaat 11857443  T

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Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 29608737 - 29608676
Alignment:
Q  246 caatgaaaaataaagtaaaattttgtttgcaatttacaaaagaacattaattcttaacgaat 307  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  29608737 caatgaaaaataaagtaaagttttgtttgcaatttacaaaagaacattaattctgaacgaat 29608676  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 322
Target Start/End: Complemental strand, 34108946 - 34108872
Alignment:
Q  246 caatgaaaaataaagtaaaattttgtttgcaatttacaaaagaacattaattcttaacgaatatcaatttacgattc 322  Q
    ||||||||||||||||||| |||||||||||||| |||||| |||| || | ||||| ||||||||||||| |||||    
T  34108946 caatgaaaaataaagtaaagttttgtttgcaattgacaaaa-aaca-tattccttaatgaatatcaatttatgattc 34108872  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 3693495 - 3693445
Alignment:
Q  266 ttttgtttgcaatttacaaaagaacattaattcttaacgaatatcaattta 316  Q
    |||| ||||||||||||||||||| |||||| |||||||||||| ||||||    
T  3693495 ttttatttgcaatttacaaaagaatattaatccttaacgaatattaattta 3693445  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 289
Target Start/End: Original strand, 32323410 - 32323453
Alignment:
Q  246 caatgaaaaataaagtaaaattttgtttgcaatttacaaaagaa 289  Q
    ||||||||||| |||| ||||||||||||||||||||| |||||    
T  32323410 caatgaaaaattaagtgaaattttgtttgcaatttacataagaa 32323453  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 246 - 311
Target Start/End: Original strand, 36690296 - 36690361
Alignment:
Q  246 caatgaaaaataaagtaaaattttgtttgcaatttacaaaagaacattaattcttaacgaatatca 311  Q
    |||||| |||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||    
T  36690296 caatgagaaataaagtaaagttttgtttgaaatttacaaaagaacatcaattcttaacgaatatca 36690361  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 246 - 322
Target Start/End: Original strand, 11500540 - 11500615
Alignment:
Q  246 caatgaaaaataaagtaaaattttgtttgcaatttacaaaagaacattaattcttaacgaatatcaatttacgattc 322  Q
    ||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |||||| ||||||||||||| ||||    
T  11500540 caatgaaaaataaagtaaagttttgtt-gcaatttacaaaacaacattaatccttaacaaatatcaatttacaattc 11500615  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 322
Target Start/End: Complemental strand, 36644799 - 36644724
Alignment:
Q  246 caatgaaaaataaagtaaaattttgtttgcaatttacaaaagaacattaattcttaacgaatatcaatttacgattc 322  Q
    |||||||||||||| |||| |||||||||||||| || |||| |||||||| ||||| ||||||||||||| |||||    
T  36644799 caatgaaaaataaattaaagttttgtttgcaattgac-aaaggacattaatccttaatgaatatcaatttatgattc 36644724  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 322
Target Start/End: Complemental strand, 22516850 - 22516775
Alignment:
Q  247 aatgaaaaataaagtaaaattttgtttgcaatttacaaaagaacattaattcttaacgaatatcaatttacgattc 322  Q
    |||||||||||||||||| ||||||||||||||  ||||| || ||||||  | ||||||||| |||||| |||||    
T  22516850 aatgaaaaataaagtaaatttttgtttgcaattatcaaaaaaatattaatcatcaacgaatattaatttatgattc 22516775  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 322
Target Start/End: Complemental strand, 15545208 - 15545133
Alignment:
Q  247 aatgaaaaataaagtaaaattttgtttgcaatttacaaaagaacattaattcttaacgaatatcaatttacgattc 322  Q
    |||||||||||||||||| ||||||||| || ||||||||||| |||||| || ||| ||||| |||||| |||||    
T  15545208 aatgaaaaataaagtaaagttttgtttgaaacttacaaaagaatattaatcctgaactaatattaatttatgattc 15545133  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 11197510 - 11197458
Alignment:
Q  251 aaaaataaagtaaaattttgtttgcaatttacaaaagaacattaattcttaac 303  Q
    ||||| |||||||  |||||||||||||||||||||||||  |||| ||||||    
T  11197510 aaaaagaaagtaaggttttgtttgcaatttacaaaagaactctaatccttaac 11197458  T

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