View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4978_low_17 (Length: 318)
Name: NF4978_low_17
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 14319210 - 14319507
Alignment:
| Q |
19 |
aataagcattctcaggaaaatcaaaattggagattcaacaaagaaaaccttcataaatggcattcagaacatggatatataataatggtgcaatatttga |
118 |
Q |
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| T |
14319210 |
aataagcattctcaggaaaatcaaaattggagattcaacaaagaaaaccttcataattggcattcagaacatggatatataataatggtgcaatatttga |
14319309 |
T |
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| Q |
119 |
acacattaaacattggtatattgtatggtaagtgcttaatcttttcacttacaagtcttgcaggctcgccatattttattaattgacgttgtaaatatat |
218 |
Q |
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| T |
14319310 |
acacattaaacattggtatattgtatggtaagtgcttaatcttttcacttacaagtcttgtaggctcgccatattttattaattgacgttgtaaatacat |
14319409 |
T |
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| Q |
219 |
aatcaataataagtggaaagactacatgttggaacaatgtatttagtgatccaaactaaactttacc--------gtccttgcctcgttaaccttcat |
308 |
Q |
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| T |
14319410 |
aatcaataataagtagaaagactacaagttggaataatgtatttagtgatccaaactaaactttacctgtttacggtccttgcctcgttaaccttcat |
14319507 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 41702986 - 41703022
Alignment:
| Q |
246 |
gttggaacaatgtatttagtgatccaaactaaacttt |
282 |
Q |
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| T |
41702986 |
gttggaacaatgtatttagtggtccaaactatacttt |
41703022 |
T |
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