View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4978_low_18 (Length: 313)
Name: NF4978_low_18
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 14 - 298
Target Start/End: Complemental strand, 29857875 - 29857591
Alignment:
| Q |
14 |
ttctgtcacctacctaactttccattcccacaagaatttcctgaatatccaacaaagaaacagttcataaactatcttgaatcctacgcgaaacactttg |
113 |
Q |
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| T |
29857875 |
ttctgtcaactacctaactttccattcccacaagaatttcctgaatatccaacaaagaaacagttcataaactatcttgaatcctacgcgaaacactttg |
29857776 |
T |
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| Q |
114 |
aaatcaacccgcgattcaacgagtgtgttcaatctgctaaatatgatgagactaatgggttgtggagagttgagactgtttccaatggaaatgaagttga |
213 |
Q |
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| T |
29857775 |
aaatcaacccgcgattcaacgagtgtgttcaatctgctaaatatgatgagactaatgggttgtggagagttgagactgtttccaatggaaatgaagttga |
29857676 |
T |
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| Q |
214 |
gtatatttgtaggtcgcttgtggttgctactggtgagaatgcagagtgtgttgtgccttatattgaagggttaggtggtgaattc |
298 |
Q |
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| T |
29857675 |
gtatatttgtaggtcgcttgtggttgctactggtgagaatgcagagtgtgttgtgccttatattgaagggttaggtggtgaattc |
29857591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 17407974 - 17408018
Alignment:
| Q |
205 |
tgaagttgagtatatttgtaggtcgcttgtggttgctactggtga |
249 |
Q |
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| T |
17407974 |
tgaagttgagtatatttgtaggtggcttgtggttgctaccggtga |
17408018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 39839155 - 39839394
Alignment:
| Q |
14 |
ttctgtcacctacctaactttccattcccacaagaatttcctgaatatccaacaaagaaacagttcataaactatcttgaatcctacgcgaaacactttg |
113 |
Q |
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| T |
39839155 |
ttctgtcaactacctaaccttccaatgcctgaagatttccctgaatacccttcaaagaaacaattcataagctaccttgaaaactatgctaacaaatttg |
39839254 |
T |
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| Q |
114 |
aaatcaacccgcgattcaacgagtgtgttcaatctgctaaatatgatgagactaatgggttgtggagagttgagactgtttccaatggaaatgaagttga |
213 |
Q |
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| T |
39839255 |
aaatcaacccgcaattcaacgagtgtgttcaatctgctaagtatgatgaaaccagtggattgtggagggtcaagac------------aaatgaagttga |
39839342 |
T |
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| Q |
214 |
gtatatttgtaggtcgcttgtggttgctactggtgagaatgcagagtgtgtt |
265 |
Q |
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| T |
39839343 |
gtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgtt |
39839394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 265
Target Start/End: Complemental strand, 39733707 - 39733564
Alignment:
| Q |
110 |
tttgaaatcaacccgcgattcaacgagtgtgttcaatctgctaaatatgatgagactaatgggttgtggagagttgagactgtttccaatggaaatgaag |
209 |
Q |
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| T |
39733707 |
tttgaaatcaacccgcaattcaacgagtgtgttcaatctgctaagtatgatgaaaccagtggattgtggagggtcaagac------------aaatgaag |
39733620 |
T |
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| Q |
210 |
ttgagtatatttgtaggtcgcttgtggttgctactggtgagaatgcagagtgtgtt |
265 |
Q |
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| T |
39733619 |
ttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgtt |
39733564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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