View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4978_low_2 (Length: 747)
Name: NF4978_low_2
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 16 - 445
Target Start/End: Original strand, 13019413 - 13019844
Alignment:
| Q |
16 |
taaagcaactatacaagtagaataaacatcacaatagccttaaacattaggtagaagagttttcttacttatatgttgtttgacatcaacctctctatca |
115 |
Q |
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| T |
13019413 |
taaagcaactatacaagtagaataaacatcacaatagccttaaacattaggtagaagagttttcttacttatatgttgtttgacatcaacctctctatca |
13019512 |
T |
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| Q |
116 |
tctaacgtgacactctttttgacacaaaacttattagtcaatttggttcatctagtgaagttaaatagttgatccaatnnnnnnngtaaatttaaattac |
215 |
Q |
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| T |
13019513 |
tctaacgtgacactcttattgacacaaaacttattagtcaatttagttcatctagtgaagttaaatagttgatgcaataaaaaaagtaaatttaaattac |
13019612 |
T |
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| Q |
216 |
aaaataacgatcaacgaaaatctaaatattatttggtctttttaacaaacaagtgcccttgggttttgctaacaaacaaggacacttgtt----attaaa |
311 |
Q |
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| T |
13019613 |
aaaataacgatcaacgaaaatctaaatattatttggtctttttaacaaataagtgcctttggattttgctaacaaacaaggacattcgttaaagattcaa |
13019712 |
T |
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| Q |
312 |
agatggaaacaatattgataatttcatatttaaaaagtaacattttgatgttttaccgtgtcgaataaacaaaattctaagataacattttaattttaaa |
411 |
Q |
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| T |
13019713 |
aaatgaaaaca--attaataatttcatatttaaaaagtaacattttgatattttacagtgtcgaataaacaaaattctaagataacattttaattttaaa |
13019810 |
T |
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| Q |
412 |
catcttatcaagtgcctcaagagtatttattagc |
445 |
Q |
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| T |
13019811 |
catgttatcaagtgcctcaagagtatttattagc |
13019844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 571 - 742
Target Start/End: Original strand, 13019970 - 13020141
Alignment:
| Q |
571 |
ctgtacgtgtgatttagaaatacgcatcctatgatgataaacgtttttggaccacattgttatgagttgttcagtcaaacgacaagaaatatgcctctga |
670 |
Q |
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| T |
13019970 |
ctgtacgtgtgatttagaaatacgcatcctatgatgataaacgtttttggaccacattgttatgagttgttcagtcaaacgacaagaaatatgcctctga |
13020069 |
T |
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| Q |
671 |
attatcgtaactcatgatgtcaaactgttcataactacaataatatccagacaaaagaaatctatctctgct |
742 |
Q |
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| T |
13020070 |
attatcgtaactcatgatgtcaaactgttcataactacaataatatccagacaaaagaaatctatctctgct |
13020141 |
T |
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