View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4978_low_22 (Length: 297)
Name: NF4978_low_22
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978_low_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 3740403 - 3740660
Alignment:
| Q |
19 |
cagagagaataactctaagttgcttagttagtttgtacctgatgcagaaataaggagaacgacaagacaaatgaacatgaagacagtgtggaatttacta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3740403 |
cagagagaataactctaagttgcttagttagtttgtacctgatgcagaaataaggagaacgacaagacaaatgaacatgaagacagtgtagaatttacta |
3740502 |
T |
|
| Q |
119 |
gtcgaggaaatcatgatttctaaatctaaatattggtctatnnnnnnnntgttagcaacactatgtttgtgtctatatgtatatattagaactaatatag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3740503 |
gtcgaggaaatcatgatttctaaatctaaatattggtctataaaaaaaatgttagcaacactatgtttgtgtctatatgtatatattagaactaatatag |
3740602 |
T |
|
| Q |
219 |
gtagacatgacaaaacaggttgaatatttttaaaatgatatgtcgatatggtctctct |
276 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3740603 |
gtagacatgacaaaacaagttgaatatttttaaaatgatatgtcgatatagtctctct |
3740660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 3729290 - 3729420
Alignment:
| Q |
19 |
cagagagaataactctaagttgcttagttagtttgtacctgatgcagaaataaggagaacgacaagacaaatgaacatgaagacagtgtggaatttacta |
118 |
Q |
| |
|
||||| |||||| ||||||||||||| |||||||||||||||| ||||||||| |||||||| ||||| |||||||||||||||||| ||||||||| |
|
|
| T |
3729290 |
cagagtgaataagtctaagttgcttaaatagtttgtacctgatgtagaaataagaagaacgacgagacagatgaacatgaagacagtgcataatttacta |
3729389 |
T |
|
| Q |
119 |
gtcgaggaaatcatgatttctaaatctaaata |
150 |
Q |
| |
|
|| |||||||||||||||||| |||||||||| |
|
|
| T |
3729390 |
gttgaggaaatcatgatttct-aatctaaata |
3729420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 256
Target Start/End: Original strand, 3737047 - 3737264
Alignment:
| Q |
36 |
agttgcttagttagtttgtacctgatgcagaaataaggagaacgacaagacaaatgaacatgaagacagtgtggaatttactagtcgaggaaatcatgat |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||| || || |||| ||||||| ||| ||||| |||| || ||||||||||| |
|
|
| T |
3737047 |
agttgcttagttagtttgtacctgatgcagaaattaggagaacggaaaggcatataaacaagaagacaatgtataatttgctagcagaagaaatcatgat |
3737146 |
T |
|
| Q |
136 |
ttctaaatctaaatattggtctatnnnnnnnntgttagcaacactatgtttgtgtctatatgtatatattagaactaatataggtagacatgacaaaaca |
235 |
Q |
| |
|
||||||||| ||||| || ||||| || | |||||| ||||||||||||||||||||||||| ||| | |||| ||||| |||||||||| |
|
|
| T |
3737147 |
ttctaaatccaaataatgttctataaagaa---gtgaccaacacaatgtttgtgtctatatgtatatattgaaaccagtataagtagatatgacaaaact |
3737243 |
T |
|
| Q |
236 |
ggttgaatatttttaaaatga |
256 |
Q |
| |
|
||| || |||||| |||||| |
|
|
| T |
3737244 |
agtttaacatttttgaaatga |
3737264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 190 - 274
Target Start/End: Original strand, 3729435 - 3729519
Alignment:
| Q |
190 |
tctatatgtatatattagaactaatataggtagacatgacaaaacaggttgaatatttttaaaatgatatgtcgatatggtctct |
274 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||| ||| ||||| |||| | |||| |||||| |
|
|
| T |
3729435 |
tctatatgtatatattggaacttatataggtagacatgacaaaacaagttgaatatatttgaaatggtatgcccatatagtctct |
3729519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 149
Target Start/End: Complemental strand, 38483029 - 38482946
Alignment:
| Q |
66 |
aaataaggagaacgacaagacaaatgaacatgaagacagtgtggaatttactagtcgaggaaatcatgatttctaaatctaaat |
149 |
Q |
| |
|
||||||||| || ||||||||| | |||||||||||| | || |||||||||| | | ||| ||||||||||||||| ||||| |
|
|
| T |
38483029 |
aaataaggaaaatgacaagacagaggaacatgaagacggggtagaatttactaataaaagaagtcatgatttctaaatgtaaat |
38482946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University