View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4978_low_27 (Length: 268)

Name: NF4978_low_27
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4978_low_27
NF4978_low_27
[»] chr6 (15 HSPs)
chr6 (22-252)||(33390432-33390674)
chr6 (89-252)||(33642096-33642259)
chr6 (96-252)||(31566603-31566759)
chr6 (25-252)||(33402985-33403212)
chr6 (90-252)||(33306925-33307087)
chr6 (86-252)||(33059990-33060156)
chr6 (86-252)||(33288010-33288176)
chr6 (96-252)||(33412363-33412519)
chr6 (87-236)||(33265318-33265467)
chr6 (87-236)||(33274462-33274611)
chr6 (86-252)||(33360933-33361099)
chr6 (87-252)||(9169294-9169459)
chr6 (22-72)||(33642281-33642331)
chr6 (96-160)||(12781945-12782009)
chr6 (96-160)||(12786136-12786200)
[»] chr2 (1 HSPs)
chr2 (86-252)||(17438168-17438334)
[»] scaffold1749 (1 HSPs)
scaffold1749 (88-252)||(583-747)
[»] scaffold0428 (1 HSPs)
scaffold0428 (88-252)||(9344-9508)
[»] chr4 (9 HSPs)
chr4 (97-237)||(31496450-31496590)
chr4 (97-237)||(31501620-31501760)
chr4 (96-252)||(31020316-31020472)
chr4 (96-252)||(31489080-31489236)
chr4 (96-225)||(31162097-31162224)
chr4 (96-252)||(31030197-31030353)
chr4 (97-252)||(31476495-31476650)
chr4 (96-201)||(31150820-31150925)
chr4 (193-251)||(31482335-31482393)


Alignment Details
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 22 - 252
Target Start/End: Original strand, 33390432 - 33390674
Alignment:
Q  22 ctttgagtttctgttcaggactcgtgcaccatctcttcaacttatattttctactnnnnnnnnn------------ctataaatttcttacttatcacgt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||                      |||||||||||||||||||||| |    
T  33390432 ctttgagtttctgttcaggactcgtgcaccatctcttcaacttatattttctacggaaaaaaaaaaaaaaaaaaaactataaatttcttacttatcacat 33390531  T
Q  110 agatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttcatgtttgacaaaag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33390532 agatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttcatgtttgacaaaag 33390631  T
Q  210 ctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  33390632 ctttatcataaattccactttgctttcgaacctcagaaggatc 33390674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 89 - 252
Target Start/End: Complemental strand, 33642259 - 33642096
Alignment:
Q  89 taaatttcttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatc 188  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| |||||||||||    
T  33642259 taaattacttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttccctccatcttgacaccatttgaaagtcttgttggaatc 33642160  T
Q  189 tttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    ||||||||||||||||||||||||    ||||||||||||||||||||| ||||||||||||||    
T  33642159 tttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatc 33642096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 96 - 252
Target Start/End: Complemental strand, 31566759 - 31566603
Alignment:
Q  96 cttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttc 195  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  31566759 cttacttatcacgtagatcccaaccaaagatactcgccacttgttttagagcttctctccatcttgacaccatctgagagtcttgtcggaatctttgttc 31566660  T
Q  196 atgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    ||||||| ||||||||| |  |||||| |||||||||||||||||||||||||||||    
T  31566659 atgtttggcaaaagcttcagaataaatcccactttgctttcgaacctcagaaggatc 31566603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 25 - 252
Target Start/End: Original strand, 33402985 - 33403212
Alignment:
Q  25 tgagtttctgttcaggactcgtgcaccatctcttcaacttatattttctactnnnnnnnnnctataaatttcttacttatcacgtagatcccaaccagag 124  Q
    ||||||||||| | |||||||||||||||||||||| ||||||||| ||||          ||||||||| |||||||||||| |||||||||||||||     
T  33402985 tgagtttctgtcctggactcgtgcaccatctcttcaccttatatttactacaaaaaaaacactataaattacttacttatcacatagatcccaaccagat 33403084  T
Q  125 atactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttcatgtttgacaaaagctttatcataaattc 224  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| | ||  |||||||||||||| |||||| |||||||| |||| |  |||||| |    
T  33403085 atactccccacttgttttagagcttccctccatcttgacaccatctcaaagccttgttggaatcttttttcatgcttgacaaaggcttcacaataaatac 33403184  T
Q  225 cactttgctttcgaacctcagaaggatc 252  Q
    ||||||||||||||||||||||||||||    
T  33403185 cactttgctttcgaacctcagaaggatc 33403212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 90 - 252
Target Start/End: Original strand, 33306925 - 33307087
Alignment:
Q  90 aaatttcttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatct 189  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| | ||| ||||||||||||    
T  33306925 aaattacttacttatcacgtagatcccaaccagagatactccccacatgttttagagcttccctccatcttgacaccatctcaaagtcttgttggaatct 33307024  T
Q  190 ttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    |||||||||||||||||| |||| |  |||||| |||||||||||||||||| ||||||||||    
T  33307025 ttgttcatgtttgacaaaggcttcacaataaatcccactttgctttcgaaccacagaaggatc 33307087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 86 - 252
Target Start/End: Original strand, 33059990 - 33060156
Alignment:
Q  86 ctataaatttcttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttgga 185  Q
    ||||||||| |||||| ||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||| ||  ||||| ||||||||    
T  33059990 ctataaattacttactcatcacgtagatcccaaccagatatactccccacttgctctagagcttctctccatcttgacaccttcatagagtcttgttgga 33060089  T
Q  186 atctttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    ||||||||||||||||||||||||||| |  |||||||||||||||||| || ||||||||||||||    
T  33060090 atctttgttcatgtttgacaaaagcttcactataaattccactttgcttccgcacctcagaaggatc 33060156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 86 - 252
Target Start/End: Original strand, 33288010 - 33288176
Alignment:
Q  86 ctataaatttcttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttgga 185  Q
    ||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||    
T  33288010 ctataaattacttacttatcacatagatcccaaccagcgatactccccacttgttttagggcttccctccatcttgacaccatctgagagtcttgttgga 33288109  T
Q  186 atctttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    || ||||||||||| ||  ||| |||| | ||||||| |||||||||||||| ||||||||||||||    
T  33288110 atgtttgttcatgtatggtaaaggcttcaccataaatcccactttgctttcgcacctcagaaggatc 33288176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 96 - 252
Target Start/End: Original strand, 33412363 - 33412519
Alignment:
Q  96 cttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| | |||| || ||||||||||||||||||    
T  33412363 cttacttatcacgtagatcccaaccagagatactccccacttggtttaaagcttccctccatcttgacaccttatgagggtcttgttggaatctttgttc 33412462  T
Q  196 atgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    |||||||||||||| || |  |||||| ||||||||||| || ||||||||||||||    
T  33412463 atgtttgacaaaagattcacaataaatcccactttgcttccgcacctcagaaggatc 33412519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 87 - 236
Target Start/End: Original strand, 33265318 - 33265467
Alignment:
Q  87 tataaatttcttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaa 186  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||| |||||   | |||||||||    
T  33265318 tataaattacttacttatcacgtagatcccaaccagagatactccccacttgttttagagcgtccctccattttgacaccttctgatgttcttgttggaa 33265417  T
Q  187 tctttgttcatgtttgacaaaagctttatcataaattccactttgctttc 236  Q
    ||||||||||||||||| ||| |||| | ||||||| |||||||||||||    
T  33265418 tctttgttcatgtttgataaaggcttcaccataaatcccactttgctttc 33265467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 87 - 236
Target Start/End: Original strand, 33274462 - 33274611
Alignment:
Q  87 tataaatttcttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaa 186  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||| |||||   | |||||||||    
T  33274462 tataaattacttacttatcacgtagatcccaaccagagatactccccacttgttttagagcgtccctccattttgacaccttctgatgttcttgttggaa 33274561  T
Q  187 tctttgttcatgtttgacaaaagctttatcataaattccactttgctttc 236  Q
    ||||||||||||||||| ||| |||| | ||||||| |||||||||||||    
T  33274562 tctttgttcatgtttgataaaggcttcaccataaatcccactttgctttc 33274611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 86 - 252
Target Start/End: Original strand, 33360933 - 33361099
Alignment:
Q  86 ctataaatttcttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttgga 185  Q
    |||||| || ||||||||||| ||||||||||||||||||||  ||||||||| | ||||||||| |||||| |||||||| ||| ||||| ||||||||    
T  33360933 ctataagttacttacttatcatgtagatcccaaccagagatatcccccacttgctctagagcttccctccatattgacaccttcttagagtcttgttgga 33361032  T
Q  186 atctttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    ||||||||||||||||||||||||||| |  ||||||  |||||||||| || ||||||||||||||    
T  33361033 atctttgttcatgtttgacaaaagcttcactataaatctcactttgcttccgcacctcagaaggatc 33361099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 87 - 252
Target Start/End: Original strand, 9169294 - 9169459
Alignment:
Q  87 tataaatttcttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaa 186  Q
    |||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||| | |||  ||||||| ||||||||| ||||| | || || |||    
T  9169294 tatagattacttacttatcacgtaggtcccaaccagagatactccccacttgttttaaacctttcctccatcctgacaccatgtgagaatcttatttgaa 9169393  T
Q  187 tctttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    |||||||||||||||| |||| |||| |  |||||| |||||||||||||| ||||||||||||||    
T  9169394 tctttgttcatgtttggcaaatgcttcacaataaatcccactttgctttcgcacctcagaaggatc 9169459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 33642331 - 33642281
Alignment:
Q  22 ctttgagtttctgttcaggactcgtgcaccatctcttcaacttatattttc 72  Q
    ||||||||||||||||  ||||||||||||||||||||| |||||||||||    
T  33642331 ctttgagtttctgttctagactcgtgcaccatctcttcaccttatattttc 33642281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 12781945 - 12782009
Alignment:
Q  96 cttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatctt 160  Q
    |||||||||||||||||||||| ||||||||| | |||||| | | ||||| |||||||| ||||    
T  12781945 cttacttatcacgtagatcccagccagagatattacccactagctgtagagtttctctccttctt 12782009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 12786136 - 12786200
Alignment:
Q  96 cttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatctt 160  Q
    ||||||||| || ||||||||| || |||||| | |||||| | | |||||||||||||||||||    
T  12786136 cttacttatgacatagatcccagccggagatattacccactagctgtagagcttctctccatctt 12786200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 86 - 252
Target Start/End: Complemental strand, 17438334 - 17438168
Alignment:
Q  86 ctataaatttcttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttgga 185  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||| |||||  || ||||||||    
T  17438334 ctataaattacttacttatcacgtagatcccaaccagcgatactccccacttgctttagagcttccctccatcttgacaccttctgaaggtcttgttgga 17438235  T
Q  186 atctttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    ||||||||||||||||||||||||||| || |||||| |||||||||||||| ||||||||||||||    
T  17438234 atctttgttcatgtttgacaaaagcttcatgataaatcccactttgctttcgcacctcagaaggatc 17438168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 88 - 252
Target Start/End: Original strand, 583 - 747
Alignment:
Q  88 ataaatttcttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaat 187  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||| | |||| || ||||| ||||    
T  583 ataaattacttacttatcacgtagatcccaaccagcgatactccccacttggtttagagcttccctccatcttgacaccttatgagggtcttgtttgaat 682  T
Q  188 ctttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    ||||||||||||||| ||||| | |    |||||| ||||||||||||   ||||||||||||||    
T  683 ctttgttcatgtttggcaaaatcgtcccaataaatcccactttgcttttttacctcagaaggatc 747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 88 - 252
Target Start/End: Original strand, 9344 - 9508
Alignment:
Q  88 ataaatttcttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaat 187  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||| | |||| || ||||| ||||    
T  9344 ataaattacttacttatcacgtagatcccaaccagcgatactccccacttggtttagagcttccctccatcttgacaccttatgagggtcttgtttgaat 9443  T
Q  188 ctttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    ||||||||||||||| ||||| | |    |||||| ||||||||||||   ||||||||||||||    
T  9444 ctttgttcatgtttggcaaaatcgtcccaataaatcccactttgcttttttacctcagaaggatc 9508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 97 - 237
Target Start/End: Complemental strand, 31496590 - 31496450
Alignment:
Q  97 ttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttca 196  Q
    |||||||||| |||||||||||||||||| |    | |||||| |||||||||| |||||||||  |||||||||||||| |||||||||||||||||||    
T  31496590 ttacttatcatgtagatcccaaccagagagatcagcgacttgtattagagcttccctccatctttgcaccatctgagagtcttgttggaatctttgttca 31496491  T
Q  197 tgtttgacaaaagctttatcataaattccactttgctttcg 237  Q
    ||||||||||| |||| | ||||||||||||||||||||||    
T  31496490 tgtttgacaaatgcttcaccataaattccactttgctttcg 31496450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 237
Target Start/End: Complemental strand, 31501760 - 31501620
Alignment:
Q  97 ttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttca 196  Q
    |||||||||||||||||| |||||||| | ||   | |||||| | |||||||| |||||||||  |||||||||||||| |||||||||| ||||||||    
T  31501760 ttacttatcacgtagatcgcaaccagatagaccggcgacttgtgtcagagcttccctccatcttagcaccatctgagagtcttgttggaatatttgttca 31501661  T
Q  197 tgtttgacaaaagctttatcataaattccactttgctttcg 237  Q
    ||||||||||| |||| |  |||||| ||||||||||||||    
T  31501660 tgtttgacaaatgcttcacaataaatcccactttgctttcg 31501620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 252
Target Start/End: Original strand, 31020316 - 31020472
Alignment:
Q  96 cttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttc 195  Q
    ||||||||||||| |||||||| ||||||||| ||||||||||| | |||||||| ||||| |||   ||||  |||||||  ||||||||| |||||||    
T  31020316 cttacttatcacgaagatcccagccagagatattccccacttgtgtcagagcttccctccaactttgtaccacatgagagtcatgttggaatgtttgttc 31020415  T
Q  196 atgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    |||||||  ||| |||| | | ||||||||  |||| | ||  ||||||||||||||    
T  31020416 atgtttggaaaaggcttcaccgtaaattcctttttgatgtctcacctcagaaggatc 31020472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 252
Target Start/End: Complemental strand, 31489236 - 31489080
Alignment:
Q  96 cttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttc 195  Q
    ||||||||||||| |||||||| || |||||| ||||||||||| | |||||||| |||||||||   ||||  |||||||  ||||||||| |||||||    
T  31489236 cttacttatcacgaagatcccagcctgagatattccccacttgtgtcagagcttccctccatctttgtaccacatgagagtcatgttggaatgtttgttc 31489137  T
Q  196 atgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    |||||||  ||| |||| | | ||||||||  |||| | ||  ||||||||||||||    
T  31489136 atgtttggaaaaggcttcaccgtaaattcctttttgatgtctcacctcagaaggatc 31489080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 96 - 225
Target Start/End: Original strand, 31162097 - 31162224
Alignment:
Q  96 cttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttc 195  Q
    ||||||||| ||| | |||||||||||||||  |  | |||||| || ||||||| |||||||||  |||||||| ||||| ||||||||||||||||||    
T  31162097 cttacttatgacgcacatcccaaccagagat--tggcgacttgtgtttgagcttccctccatctttgcaccatctcagagtcttgttggaatctttgttc 31162194  T
Q  196 atgtttgacaaaagctttatcataaattcc 225  Q
    |||||||| ||| |||| | ||||| ||||    
T  31162195 atgtttgaaaaaggcttcaacataatttcc 31162224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 252
Target Start/End: Original strand, 31030197 - 31030353
Alignment:
Q  96 cttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttc 195  Q
    ||||||||||||| |||||||| ||||||||| ||||||||||| | |||||||| ||||| |||   ||||  ||||| |  ||||||||| |||||||    
T  31030197 cttacttatcacgaagatcccagccagagatattccccacttgtgtcagagcttccctccaactttgtaccacatgagattcatgttggaatgtttgttc 31030296  T
Q  196 atgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    |||||||  ||| |||| | | ||||||||  |||| | ||  ||||||||||||||    
T  31030297 atgtttggaaaaggcttcaccgtaaattcctttttgatgtctcacctcagaaggatc 31030353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 252
Target Start/End: Complemental strand, 31476650 - 31476495
Alignment:
Q  97 ttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttca 196  Q
    ||||||||||||||||||||||||||||| |    | |||||| | |||||| | ||||||| |  |||||| ||||||| ||||| |||||| ||| ||    
T  31476650 ttacttatcacgtagatcccaaccagagagatcggcgacttgtgtcagagctgccctccatcgtagcaccatttgagagtcttgtttgaatctgtgtcca 31476551  T
Q  197 tgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatc 252  Q
    |||| |||||| |||| |  |||||| ||| |||||||||| |||  |||||||||    
T  31476550 tgttggacaaatgcttcactataaatcccagtttgctttcgcaccaaagaaggatc 31476495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 201
Target Start/End: Original strand, 31150820 - 31150925
Alignment:
Q  96 cttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttc 195  Q
    ||||||||| ||||| |||||| ||||||| | |  |||||||| | || ||||| |||||||||  ||| || | | |||||||||||||||||| |||    
T  31150820 cttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatctttcttc 31150919  T
Q  196 atgttt 201  Q
    ||||||    
T  31150920 atgttt 31150925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 31482393 - 31482335
Alignment:
Q  193 ttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggat 251  Q
    |||||||||| |||| |||||| ||||| | |||||||||||||| |||||||| ||||    
T  31482393 ttcatgtttggcaaaggctttagcataactcccactttgctttcgtacctcagatggat 31482335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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