View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4978_low_28 (Length: 266)

Name: NF4978_low_28
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4978_low_28
NF4978_low_28
[»] chr2 (11 HSPs)
chr2 (18-138)||(15024885-15025004)
chr2 (172-265)||(15014216-15014309)
chr2 (172-265)||(15024742-15024834)
chr2 (29-102)||(15020883-15020957)
chr2 (29-102)||(15002985-15003059)
chr2 (217-262)||(15020715-15020760)
chr2 (174-265)||(15003143-15003226)
chr2 (18-94)||(14544328-14544405)
chr2 (40-82)||(15014413-15014456)
chr2 (177-207)||(15009307-15009337)
chr2 (18-82)||(15009440-15009508)
[»] chr5 (1 HSPs)
chr5 (173-264)||(29468837-29468920)


Alignment Details
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 15025004 - 15024885
Alignment:
Q  18 acaatgtgtacagaacaaaagcaaaagtagttaaag-atgcatttacaagtctaaagatgaaagctataatcatgaaattgtgagattggagaatctgca 116  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  15025004 acaatgtgtacagaacaaaagcaaaagtagttaaaggatgcatttacaagtctaaagatgaaagctataatcatgaaat--tgagattggagaatctgca 15024907  T
Q  117 tatgtaatttgtatacactatg 138  Q
    ||||||||||||||||||||||    
T  15024906 tatgtaatttgtatacactatg 15024885  T

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Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 172 - 265
Target Start/End: Complemental strand, 15014309 - 15014216
Alignment:
Q  172 agaccaaatgcaagaccatttgaactttcacatgtacaacagtacaaggtctaaagaaattgtaactacaatatacaaaatgcaagacctatgc 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15014309 agaccaaatgcaagaccatttgaactttcacatgtacaacagtacaaggtctaaagaaattgtaactactatatacaaaatgcaagacctatgc 15014216  T

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Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 172 - 265
Target Start/End: Complemental strand, 15024834 - 15024742
Alignment:
Q  172 agaccaaatgcaagaccatttgaactttcacatgtacaacagtacaaggtctaaagaaattgtaactacaatatacaaaatgcaagacctatgc 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15024834 agaccaaatgcaagaccatttgaactttcacatgtacaacagtacaaggtctaaagaaattgtaactacaatatacaaaatg-aagacctatgc 15024742  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 15020957 - 15020883
Alignment:
Q  29 agaacaaaagcaaaagtagttaaa-gatgcatttacaagtctaaagatgaaagctataatcatgaaattgtgaga 102  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||| ||||| || |||||||||||||||||||    
T  15020957 agaacaaaaggaaaagtagttaaaagatgcatttacaagtctaaagctgaaatctttaatcatgaaattgtgaga 15020883  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 15002985 - 15003059
Alignment:
Q  29 agaacaaaagcaaaagtagttaaa-gatgcatttacaagtctaaagatgaaagctataatcatgaaattgtgaga 102  Q
    |||||||||| | ||||||||||| ||||||||||||||||||||| | |||||| ||||| |||||||||||||    
T  15002985 agaacaaaaggataagtagttaaaagatgcatttacaagtctaaagctaaaagctttaatcgtgaaattgtgaga 15003059  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 15020760 - 15020715
Alignment:
Q  217 aaggtctaaagaaattgtaactacaatatacaaaatgcaagaccta 262  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  15020760 aaggtctaaagaaattgtaactacaatataccaaatgcaagaccta 15020715  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 265
Target Start/End: Original strand, 15003143 - 15003226
Alignment:
Q  174 accaaatgcaagaccatttgaactttcacatgtacaacagtacaaggtctaaagaaattgtaactacaatatacaaaatgcaagacctatgc 265  Q
    |||||||||||||||||||||||||||||||        | ||||||||| || | ||||| |||||||||||| |||||||||||||||||    
T  15003143 accaaatgcaagaccatttgaactttcacat--------gaacaaggtctgaaaagattgtcactacaatatactaaatgcaagacctatgc 15003226  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 14544405 - 14544328
Alignment:
Q  18 acaatgtgtacagaacaaaagcaaaagtagttaaag-atgcatttacaagtctaaagatgaaagctataatcatgaaa 94  Q
    |||||||||| |||||||||| |||||| ||| ||| ||||| |||| ||||||| | |||||||| |||||||||||    
T  14544405 acaatgtgtagagaacaaaaggaaaagttgttcaaggatgcacttaccagtctaaggctgaaagctttaatcatgaaa 14544328  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 15014456 - 15014413
Alignment:
Q  40 aaaagtagttaaa-gatgcatttacaagtctaaagatgaaagct 82  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||    
T  15014456 aaaagtagttaaaagatgcatttacaagtctaaagctgaaagct 15014413  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 207
Target Start/End: Complemental strand, 15009337 - 15009307
Alignment:
Q  177 aaatgcaagaccatttgaactttcacatgta 207  Q
    |||||||||||||||||||||||||||||||    
T  15009337 aaatgcaagaccatttgaactttcacatgta 15009307  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 15009508 - 15009440
Alignment:
Q  18 acaatgtgtacagaacaaaagcaaaa---gtagttaaa-gatgcatttacaagtctaaagatgaaagct 82  Q
    |||||||||| |||||||||| ||||   ||||||||| | ||||||||||||||||||| ||||||||    
T  15009508 acaatgtgtagagaacaaaaggaaaaaaagtagttaaaaggtgcatttacaagtctaaagctgaaagct 15009440  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 29468837 - 29468920
Alignment:
Q  173 gaccaaatgcaagaccatttgaactttcacatgtacaacagtacaaggtctaaagaaattgtaactacaatatacaaaatgcaagacctatg 264  Q
    ||||||||| || |||||||||||||||||||||||||        | | | |||||||||| |||||||||||| ||||||||||||||||    
T  29468837 gaccaaatgaaataccatttgaactttcacatgtacaa--------gttttgaagaaattgtcactacaatatactaaatgcaagacctatg 29468920  T

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