View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4978_low_3 (Length: 580)
Name: NF4978_low_3
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 264
Target Start/End: Complemental strand, 10498901 - 10498643
Alignment:
| Q |
12 |
agagagagcgaacatacattaacaaagcaatcatgaaactgaagtctcataacagaggcaacacttcttggttctcttataagagcttttctcataacat |
111 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10498901 |
agagagagagaacatacattaacaaagcaatcatgaaactgaagtctcataacagaggcaacacttcttggttctcttataagagcttttctcataacat |
10498802 |
T |
|
| Q |
112 |
ctctgacaatggtttcagcttttggacatgtttttgagtaaaacccaggtcgaagatctgat------gatgttactatgatgatgtttatgatgaagat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
10498801 |
ctctgacaatggtttcagcttttggacatgtttttgagtaaaacccaggtcgaagatctgatgatgatgatgttactgtgatgatgtttatgatgaagat |
10498702 |
T |
|
| Q |
206 |
cagaaacagaaacatggtgatgatgggtcggttgttgggaatctgaaacatggtactac |
264 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10498701 |
cagaaacagaaacatggtgataatgggtcggttgttgggaatctgaaacatggtactac |
10498643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 310 - 564
Target Start/End: Complemental strand, 10498597 - 10498341
Alignment:
| Q |
310 |
ggaaagaggagacactagacataaggttttgtaactttcctctttgatttgaaggatatttaatggtagatgaaaatattgagtgagctatggtactatg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10498597 |
ggaaagaggagacactagacataaggttttgtaactttcctctttgatttgaaggatatttaatggtagatgaaaatattgagtgagctatggtactatg |
10498498 |
T |
|
| Q |
410 |
tgtcatgcaataattggttaagag--ttgctattatattcccacccannnnnnncttataaaaacaaatccgttttgatgtgttcaatgaaagttgtctc |
507 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10498497 |
tgtcatgcaataattggttgagagttttgctattatattcccacccatttttttcttataaaaacaaatccgttttgatgtgtctaatgaaagttgtctc |
10498398 |
T |
|
| Q |
508 |
ggttgataagcaatgacttgtttgtaagattatggatataactctcggagacagcat |
564 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
10498397 |
ggttgataagcaatgacttgtttgcaagattatggatatacctctcggagacagcat |
10498341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 10586347 - 10586554
Alignment:
| Q |
16 |
agagcgaacatacattaacaaagcaatcatgaaactgaagtctcataacagaggcaacacttcttggttctcttataagagcttttctcataacatctct |
115 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| |
|
|
| T |
10586347 |
agagagaacatacattaacaaagcaatcatgaaattgaaatctcataacagaggcaacacttcttggttcttttttaagagcatttctcataacatctct |
10586446 |
T |
|
| Q |
116 |
gacaatggtttcagcttttggacatgtttttgagtaaaacccaggtcgaagatctgatgatgttactatgatgatgtttatgatgaagatcagaaacaga |
215 |
Q |
| |
|
||| | |||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
10586447 |
cacagttgtttcagcttgtggacatgtttttgagtaatacccaggtcgaagatctgttgatgttactatgattatgtttatgatgaagatcagaaacata |
10586546 |
T |
|
| Q |
216 |
aacatggt |
223 |
Q |
| |
|
| |||||| |
|
|
| T |
10586547 |
agcatggt |
10586554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University