View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4978_low_34 (Length: 251)
Name: NF4978_low_34
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978_low_34 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 11747291 - 11747050
Alignment:
| Q |
10 |
gcacagacatcagatacaacattaacattgacactgacacgtaaacatcactaataatttaagaaagtggaagtgattgaaaatatcacatgtgttcgtg |
109 |
Q |
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| T |
11747291 |
gcacagacatcagatacaacattaacattgacactgacacgtaaacatcactaataatttaagaaagtggaagtgattgaaaatatcacatgtgttcgtg |
11747192 |
T |
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| Q |
110 |
tcgtttcggtgtctaacaaagacatgtatctgacattgaacacgtatcaaacatggttcatctactgagggtcctaaaggtatttcaccacatgtgacag |
209 |
Q |
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| T |
11747191 |
tcgtttcggtgtctaacaaagacatgcatctgacattgaacacgtatcaaacatggttcatctactgagggtcctaaaggtatttcaccacatgtgacag |
11747092 |
T |
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| Q |
210 |
ccctagtatgaaaaatatatactaacataatagctataatat |
251 |
Q |
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| T |
11747091 |
ccctaatatgaaaaatttatactaacataatagctataatat |
11747050 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 29219725 - 29219674
Alignment:
| Q |
40 |
acactgacacgtaaacatcactaataatttaagaaagtggaagtgattgaaa |
91 |
Q |
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| T |
29219725 |
acactgacatgtaaacgtcagtaataatttaagaaaatggaagtaattgaaa |
29219674 |
T |
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