View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4978_low_4 (Length: 530)
Name: NF4978_low_4
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 454; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 19 - 517
Target Start/End: Complemental strand, 7582771 - 7582273
Alignment:
| Q |
19 |
acaagggaggaataagttcttcggggtggagcttaattcaatgaatgtgtcgtttgcttcaaatagattgaaaagtgaaggaaaactattgagaggatgt |
118 |
Q |
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| T |
7582771 |
acaagggaggaataagttcttcggggtggagcttaattcaatgaatgtgtcgtttgcttcaaatagattgaaaagtgaaggaaaactattgagaggatgt |
7582672 |
T |
|
| Q |
119 |
ttttactaatattgtaatttaggctatcaattgattatttatgaattgtgttcggctcaaattagatacttattgttagcttaaacgaacccctccattg |
218 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7582671 |
ttttactaatattgtaatttaggttatcaatcgattatttatgaattgtgttcggctcaaattagatacttattgttagcttaaacgaacccctccattg |
7582572 |
T |
|
| Q |
219 |
atttcgttgcagttcttttctttgggataaggnnnnnnnnnnncatgatttgtccatagtattcaaagtggaaattttaacataaattttgagatgccaa |
318 |
Q |
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| T |
7582571 |
atttcgttgcagttcttttctttgggataaggagaaaaaaaaacatgatttgtccttagtattcaaagtggaaattttaacataaattttgagatgccaa |
7582472 |
T |
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| Q |
319 |
acaatatattgcatccagccattgcaaagtataaaataaattaaggaatacaatatttaacacaatctttcaaattttgcttgaatgaaaatgtaatagg |
418 |
Q |
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| T |
7582471 |
acaatatattgcatccagccattgcaaagtataaaataaattaaggaatacaatatttaacacaatctttcaaattttgcttgaatgaaaatgtaatagg |
7582372 |
T |
|
| Q |
419 |
cgaccatatcacacctaagattgagtacaaagattttcaaaccccatatactcatgattttccatcttcacaatcattttctctattcctactccacct |
517 |
Q |
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| T |
7582371 |
cgaccatatcacacctaagattgagtacaaagattttcaaaccccatatactcatgattttccatcttcacaatcattttctctattcctactccacct |
7582273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 438 - 517
Target Start/End: Complemental strand, 7572172 - 7572093
Alignment:
| Q |
438 |
attgagtacaaagattttcaaaccccatatactcatgattttccatcttcacaatcattttctctattcctactccacct |
517 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||| |
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| T |
7572172 |
attgagtgcaaagattttcaaaccccatatactcatgattttccaacttcacaatcatgttctgaattcctactccacct |
7572093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 349 - 431
Target Start/End: Complemental strand, 7572317 - 7572234
Alignment:
| Q |
349 |
ataaaataaattaaggaatacaatatttaacacaatc-tttcaaattttgcttgaatgaaaatgtaataggcgaccatatcaca |
431 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||| |||||| ||| |||||||| |
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| T |
7572317 |
ataaaataaattaaggaatacaatatttaacacaatcttttccaaatttgcttgaatgaaaatggaataggtgacgatatcaca |
7572234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 814063 - 814017
Alignment:
| Q |
149 |
ttgattatttatgaattgtgttcggctcaaattagatacttattgtt |
195 |
Q |
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||||||||||||||||||||| || ||||| ||||| |||||||||| |
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| T |
814063 |
ttgattatttatgaattgtgtccgactcaagttagagacttattgtt |
814017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 517
Target Start/End: Original strand, 33123393 - 33123461
Alignment:
| Q |
449 |
agattttcaaaccccatatactcatgattttccatcttcacaatcattttctctattcctactccacct |
517 |
Q |
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| T |
33123393 |
agattgtcaaaccccatatattcttcattttccatcttctcaaccatattccctattcccaccccacct |
33123461 |
T |
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