View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4978_low_40 (Length: 242)
Name: NF4978_low_40
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 592687 - 592491
Alignment:
| Q |
1 |
tagatggtggtgatacatttttatcacaatttcagcagtcatgtttgcatcccaatggttatcaactccacactgttcatgaagccaaattcttaacgta |
100 |
Q |
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| T |
592687 |
tagatggtggtgatacattt--atcacaatgtcagcagtcatgtttgcatcccaatggttatcaactccacactgttcatgaagccaaattcttaacgta |
592590 |
T |
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| Q |
101 |
attgaaaataaaattttacacttcaacttgaattcattatcatattttgataagctggagaagctcttgaattctgtttcgacttgtcatgatcatggt |
199 |
Q |
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| T |
592589 |
attgaaaataaaattttacactgcaacttgaattcattatcatattttgataagctggagaagctcttgaattctgtttcgacttgacatgatcatggt |
592491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 39 - 199
Target Start/End: Original strand, 579785 - 579937
Alignment:
| Q |
39 |
tcatgtttgcatcccaatggttatcaac-tccacactgttcatgaagccaaattcttaacgtaattgaaaataaaattttacacttcaacttgaattcat |
137 |
Q |
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| T |
579785 |
tcatgtttgcatct-aatggttatccacctccacacttttcatgaagccaaattctt--------tgaaaataaaattttacactgcaacttgaattcat |
579875 |
T |
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| Q |
138 |
tatcatattttgataagctggagaagctcttgaattctgtttcgacttgtcatgatcatggt |
199 |
Q |
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| T |
579876 |
tatcatattttgataagctggagaagctcttgaattctgtttggacttgacatgaccatggt |
579937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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