View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4978_low_41 (Length: 240)
Name: NF4978_low_41
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 27329605 - 27329730
Alignment:
| Q |
21 |
agagacagaaaatatatttaaccctttaatatataaacgttaattcttaccttatactcactgctcaaagactggatataatcataagtccaaattgatg |
120 |
Q |
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| T |
27329605 |
agagacagaaaatatatttaaccctttaatatataaacgtcaattcttaccttatactcactgctcaaagactggatataatcataagtccaaattgatg |
27329704 |
T |
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| Q |
121 |
gttggaaattagcagaacgacgagta |
146 |
Q |
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| T |
27329705 |
gttggaaattagcagaacgacgagta |
27329730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 27447242 - 27447361
Alignment:
| Q |
96 |
atataatcataagtccaaattgatggttggaaattagcagaacgacgagtaattattagactatgagcttgtgcatccttatatgatcccttgcattgag |
195 |
Q |
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| T |
27447242 |
atataatcgtaggtccaaattgatggttgagaattagcagagcgacgagtaattgtttgactatcatcttttgcatccttagatgatgcattgcattgag |
27447341 |
T |
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| Q |
196 |
ttttactagagaaggtattg |
215 |
Q |
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| T |
27447342 |
ttttaatagagaaggtattg |
27447361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 27329744 - 27329791
Alignment:
| Q |
175 |
tatatgatcccttgcattgagttttactagagaaggtattgaagttac |
222 |
Q |
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| T |
27329744 |
tatatgatcccttgcattgagttttactagaaaaggtattgaagttac |
27329791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 8138852 - 8138880
Alignment:
| Q |
29 |
aaaatatatttaaccctttaatatataaa |
57 |
Q |
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| T |
8138852 |
aaaatatatttaaccctttaatatataaa |
8138880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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