View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4978_low_42 (Length: 240)

Name: NF4978_low_42
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4978_low_42
NF4978_low_42
[»] chr1 (4 HSPs)
chr1 (1-224)||(2758550-2758773)
chr1 (65-170)||(28113081-28113186)
chr1 (98-173)||(6433257-6433329)
chr1 (60-145)||(24574416-24574498)
[»] chr3 (3 HSPs)
chr3 (39-184)||(11500818-11500964)
chr3 (60-113)||(22516474-22516527)
chr3 (106-182)||(54604977-54605053)
[»] chr5 (5 HSPs)
chr5 (52-185)||(25815607-25815740)
chr5 (24-183)||(36410435-36410598)
chr5 (60-185)||(21178703-21178828)
chr5 (106-184)||(5010829-5010908)
chr5 (60-115)||(10912445-10912502)
[»] chr8 (5 HSPs)
chr8 (60-187)||(18257972-18258099)
chr8 (24-156)||(29608351-29608474)
chr8 (60-184)||(32323773-32323897)
chr8 (126-170)||(25106856-25106900)
chr8 (1-61)||(32323660-32323720)
[»] chr7 (1 HSPs)
chr7 (24-184)||(25032429-25032591)
[»] scaffold0391 (1 HSPs)
scaffold0391 (87-184)||(16164-16262)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 2758550 - 2758773
Alignment:
Q  1 atactaaagcgagcctcaaggaactcatatttcttatgtcttcgaattttcttataatttttggatatatcatatgatttgttaagtttcttgaatatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2758550 atactaaagcgagcctcaaggaactcatatttcttatgtcttcgaattttcttataatttttggatatatcatatgatttgttaagtttcttgaatatat 2758649  T
Q  101 tttgcatataaaattttgttttttatttactaatttatactcttacattcggtccccctaaactaaatttatgactccgtccctgcttcgtacgaagatc 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2758650 tttgcatataaaattttgttttttatttactaagttatactcttatattcggtccccctaaactaaatttatgactctgtccctgcttcgtacgaagatc 2758749  T
Q  201 tctgtgcataaaacaagcccaaga 224  Q
    ||||||||||||||||||||||||    
T  2758750 tctgtgcataaaacaagcccaaga 2758773  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 65 - 170
Target Start/End: Original strand, 28113081 - 28113186
Alignment:
Q  65 atatatcatatgatttgttaagtttcttgaatatattttgcatataaaattttgttttttatttactaatttatactcttacattcggtccccctaaact 164  Q
    |||||||||||||||| |||| ||| ||||||||||| ||||||||||| |||||||||| |||||||| ||||||||||| | |||  || ||||| ||    
T  28113081 atatatcatatgatttcttaaatttattgaatatattatgcatataaaaatttgttttttctttactaagttatactcttaaactcgaccctcctaagct 28113180  T
Q  165 aaattt 170  Q
    ||||||    
T  28113181 aaattt 28113186  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 173
Target Start/End: Original strand, 6433257 - 6433329
Alignment:
Q  98 tattttgcatataaaattttgttttttatttactaatttatactcttacattcggtccccctaaactaaatttatg 173  Q
    |||| ||||||||||  |||||||||| |||||||| ||||||||||| | |||   |||||||||||||||||||    
T  6433257 tattatgcatataaatatttgttttttctttactaaattatactcttaaactcg---cccctaaactaaatttatg 6433329  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 24574416 - 24574498
Alignment:
Q  60 tttggatatatcatatgatttgttaagtttcttgaatatattttgcatataaaattttgttttttatttactaatttatactctta 145  Q
    |||||||||||||||| |||| |||| ||||||  |||||||||||||||   ||||| ||| |  |||||||| |||||||||||    
T  24574416 tttggatatatcatataatttcttaaatttctttgatatattttgcatat---attttttttgtgttttactaaattatactctta 24574498  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 39 - 184
Target Start/End: Original strand, 11500818 - 11500964
Alignment:
Q  39 tcttcgaattttcttataatttttggatatatcatatgatttgttaagtttcttgaatatattttgcatataaaattttgttttttatttactaatttat 138  Q
    |||| ||| ||||| |||| |||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||| |||||| |||||||| ||||    
T  11500818 tctttgaaatttctcataacttttggatatatcatatgattttttaaatttcttgaatatattatgcatataaaattttattttttctttactaagttat 11500917  T
Q  139 actcttacattcggtcc-ccctaaactaaatttatgactccgtccct 184  Q
    ||||||| |||  |||| ||||||| ||| ||| || ||||||||||    
T  11500918 actcttaaatttagtcctccctaaaataattttttggctccgtccct 11500964  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 22516527 - 22516474
Alignment:
Q  60 tttggatatatcatatgatttgttaagtttcttgaatatattttgcatataaaa 113  Q
    ||||||||||||||||||||| |||| ||||||||||||||| |||||||||||    
T  22516527 tttggatatatcatatgatttcttaactttcttgaatatattatgcatataaaa 22516474  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 54605053 - 54604977
Alignment:
Q  106 atataaaattttgttttttatttactaatttatactcttacattcggtccccctaaactaaatttatgactccgtcc 182  Q
    |||| ||| |||||||||| |||||||| ||||||||||| ||||||| | ||||| ||||||||  ||||||||||    
T  54605053 atatgaaaatttgttttttctttactaagttatactcttaaattcggttctcctaagctaaattttggactccgtcc 54604977  T

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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 52 - 185
Target Start/End: Original strand, 25815607 - 25815740
Alignment:
Q  52 ttataatttttggatatatcatatgatttgttaagtttcttgaatatattttgcatataaaattttgttttttatttactaatttatactcttacattcg 151  Q
    ||||||||||| ||||||||||||||||| |||| |||||| |||||||| ||||||||||| ||  |||||| |||||||| ||||||||||| |||||    
T  25815607 ttataatttttagatatatcatatgatttcttaaatttcttcaatatattatgcatataaaaattctttttttctttactaagttatactcttaaattcg 25815706  T
Q  152 gtccccctaaactaaatttatgactccgtccctg 185  Q
    ||||||||||  ||||||| || |||| ||||||    
T  25815707 gtccccctaagataaatttctggctccatccctg 25815740  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 183
Target Start/End: Original strand, 36410435 - 36410598
Alignment:
Q  24 ctcatatttcttatgtcttcgaattttcttataatttttggatatatcatatgatttgttaagtttcttgaatatattttgcatataaaattttgttttt 123  Q
    ||||| || ||||| |||| ||| |||||||| ||||||||||| |||||||||||  |||| | ||||||||||||| |||||||||||||||  ||||    
T  36410435 ctcatcttccttatatctttgaaatttcttattatttttggataaatcatatgattccttaaatatcttgaatatattatgcatataaaatttttatttt 36410534  T
Q  124 tatttactaatttatactcttacattcggtccccc----taaactaaatttatgactccgtccc 183  Q
    |  ||||||| ||||||||||| |||| |||| ||    |||| |||||||||| |||||||||    
T  36410535 tcgttactaaattatactcttaaattcagtcctcctaattaaattaaatttatggctccgtccc 36410598  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 185
Target Start/End: Original strand, 21178703 - 21178828
Alignment:
Q  60 tttggatatatcatatgatttgttaagtttcttgaatatattttgcatataaaattttgttttttatttactaatttatactcttacattcggt-ccccc 158  Q
    |||||||||||||||| |||| |||| || ||||||| |||  ||||||||||| ||||| |||| |||||| | ||||||||||| | ||||| |||||    
T  21178703 tttggatatatcatataatttcttaaattccttgaatttatcatgcatataaaaatttgtcttttctttact-agttatactcttaaactcggtcccccc 21178801  T
Q  159 taaactaaatttatgactccgtccctg 185  Q
    ||| ||||||||  | |||||||||||    
T  21178802 taagctaaatttcggtctccgtccctg 21178828  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 5010829 - 5010908
Alignment:
Q  106 atataaaattttgttttttatttactaatttatactcttacattcggtcccc-ctaaactaaatttatgactccgtccct 184  Q
    |||||||| |||||||||| |||||||  ||||||||||| ||| ||||||| |||| |||||||  ||||| |||||||    
T  5010829 atataaaaatttgttttttctttactatgttatactcttaaatttggtccccactaagctaaattcctgactacgtccct 5010908  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 10912445 - 10912502
Alignment:
Q  60 tttggatatatcatatgatttgttaagtttcttgaa--tatattttgcatataaaatt 115  Q
    |||||||||||||||| |||| |||| |||||||||  |||||| |||||||||||||    
T  10912445 tttggatatatcatattattttttaaatttcttgaatgtatattatgcatataaaatt 10912502  T

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Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 60 - 187
Target Start/End: Original strand, 18257972 - 18258099
Alignment:
Q  60 tttggatatatcatatgatttgttaagtttcttgaatatattttgcatataaaattttgttttttatttactaatttatactcttacattcggtccccct 159  Q
    |||||||||||||||| |||| |||| ||||||||||||||| ||||||||||| ||  |||||| || ||||| ||||||||||| | |||| ||||||    
T  18257972 tttggatatatcatataatttcttaaatttcttgaatatattatgcatataaaaattaattttttcttgactaagttatactcttaaactcggcccccct 18258071  T
Q  160 aaactaaatttatgactccgtccctgct 187  Q
    || |||||||| ||||||||||| ||||    
T  18258072 aagctaaatttctgactccgtccttgct 18258099  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 29608474 - 29608351
Alignment:
Q  24 ctcatatttcttatgtcttcgaattttcttataatttttggatatatcatatgatttgttaagtttcttgaatatattttgcatataaaattttgttttt 123  Q
    ||||| |||||||| | || ||| |||||||||||||||||||||||||||| ||||         |||||||||||| ||||||||||| |||||||||    
T  29608474 ctcatctttcttatatttttgaaatttcttataatttttggatatatcatataattt---------cttgaatatattatgcatataaaaatttgttttt 29608384  T
Q  124 tatttactaatttatactcttacattcggtccc 156  Q
    | |||||||| ||||||||||| ||||||||||    
T  29608383 tctttactaagttatactcttaaattcggtccc 29608351  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 184
Target Start/End: Original strand, 32323773 - 32323897
Alignment:
Q  60 tttggatatatcatatgatttgttaagtttcttgaatatattttgcatataaaattttgttttttatttactaatttatactcttacattcggtccccct 159  Q
    |||||||||||||||| |||| |||| ||||||| ||| ||| ||| ||||||| ||||| |||| |||||||  ||||| ||||| | ||||   ||||    
T  32323773 tttggatatatcatataatttcttaaatttcttgtatacattatgcttataaaaatttgtgttttctttactatgttatattcttaaactcggcatccct 32323872  T
Q  160 aaactaaatttatgactccgtccct 184  Q
     |||||||||| ||  |||||||||    
T  32323873 gaactaaatttttgtttccgtccct 32323897  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 25106900 - 25106856
Alignment:
Q  126 tttactaatttatactcttacattcggtccccctaaactaaattt 170  Q
    |||||||| ||||| ||||| ||||||||||||||||||||||||    
T  25106900 tttactaagttatattcttaaattcggtccccctaaactaaattt 25106856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 32323660 - 32323720
Alignment:
Q  1 atactaaagcgagcctcaaggaactcatatttcttatgtcttcgaattttcttataatttt 61  Q
    ||||| |||| ||||||||  |||||||||||||||| |||| | | ||||||||||||||    
T  32323660 atactcaagcaagcctcaaaaaactcatatttcttatatctttggaatttcttataatttt 32323720  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 25032591 - 25032429
Alignment:
Q  24 ctcatatttcttatgtcttcgaattttcttataatttttggata-tatcatatgatttgttaagtttcttgaatatattttgcatataaaattttgtttt 122  Q
    ||||| |||||||| |||| ||| |||||| ||||||||   || ||||||||||||| |||| ||||||||||||||| ||||||| ||  ||||||||    
T  25032591 ctcatctttcttatatctttgaaatttcttctaatttttttgtaatatcatatgatttcttaaatttcttgaatatattatgcatatgaacatttgtttt 25032492  T
Q  123 ttatttactaatttatactcttacattcggtc-cccctaaactaaatttatgactccgtccct 184  Q
    || |||||||| |||||||||||  ||| ||| || |||| ||||||||||| ||||||||||    
T  25032491 ttctttactaagttatactcttaagttcagtctccactaagctaaatttatggctccgtccct 25032429  T

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Target: scaffold0391 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 16262 - 16164
Alignment:
Q  87 tttcttgaatatattttgcatataaaattttgttttttatttactaatttatactcttacattcggtccc-cctaaactaaatttatgactccgtccct 184  Q
    ||||||||||||||| ||||||||||| ||| |||| | |||||||| ||||||||||| ||||| ||||  ||||||||||||| |||||||||||||    
T  16262 tttcttgaatatattatgcatataaaaatttattttatgtttactaagttatactcttaaattcgatcccatctaaactaaatttctgactccgtccct 16164  T

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