View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4978_low_44 (Length: 237)
Name: NF4978_low_44
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978_low_44 |
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Alignment Details
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 33795771 - 33795985
Alignment:
| Q |
13 |
ttagttatcgaaaccaaatagttaaaaaa--cacaagnnnnnnng---gggtgaattgagcttttaaaatattttctttaaaagtgtttctttgaattga |
107 |
Q |
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| T |
33795771 |
ttagttatcgaaaccaaatagttaaaaaaaacacaagaaaaaaggaaggggtgaattgggcttttaaaatattttctttaaaagtgtttccttgaattca |
33795870 |
T |
|
| Q |
108 |
gtaaaccaaaataaaagggcttagtgaaaggaaagatc-gacttatattgattcattgtgaatctgatatttaaagtctgatcctttcaaactatatgat |
206 |
Q |
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||||| ||||||||||| || ||||||||||||||||| || |||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||| |
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| T |
33795871 |
gtaaatcaaaataaaagagcctagtgaaaggaaagatcagatttatattgattcattgtgaatctgatatctaaaatctgatcctttcaaattatatgat |
33795970 |
T |
|
| Q |
207 |
tttttgataaacaat |
221 |
Q |
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||||||||||||||| |
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| T |
33795971 |
tttttgataaacaat |
33795985 |
T |
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