View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4978_low_45 (Length: 237)
Name: NF4978_low_45
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978_low_45 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 35268071 - 35268291
Alignment:
| Q |
17 |
agcatatgctaataagaaaaatgaagaagaaagccatggacagaaactattaccacagtatgacaggaaaactcaatgagcttcaaacataatggatcct |
116 |
Q |
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| T |
35268071 |
agcataggctaataagaaaaatgaagaagaaagccatggacagaaactattaccacagtatgacaggaaaactcaatgagcttcaaacataatggatcct |
35268170 |
T |
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| Q |
117 |
ccaacaatgaagcttccaaatatccaacaaattgggagtgatcttcacaatgatatacaaacccaaagaacaagagaaagcttcactaacgatccaggac |
216 |
Q |
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| T |
35268171 |
ccaacaatgaagcttcaaaatatccaacaaattgggtgtgatcttcacaatgatatacaaacccaaagaacaagagaaagcttcactaacgatccaggac |
35268270 |
T |
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| Q |
217 |
taacaaactgagggcatatcc |
237 |
Q |
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| T |
35268271 |
taacaaactgagggcatatcc |
35268291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 214
Target Start/End: Complemental strand, 8837699 - 8837587
Alignment:
| Q |
101 |
aaacataatggatcctccaacaatgaagcttccaaatatccaacaaattgggagtgatcttcacaatgatatacaaacccaaagaacaagagaaagcttc |
200 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||||||||||||| || ||||||||||||||||||||||| | |||| ||||||||| ||| |
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| T |
8837699 |
aaacataatggatcctccaacaacgaagctta-aaatatccaacaaattgggtgtaatcttcacaatgatatacaaaccaagagaataagagaaagtttc |
8837601 |
T |
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| Q |
201 |
actaacgatccagg |
214 |
Q |
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| T |
8837600 |
agtaacgatccagg |
8837587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 35305557 - 35305615
Alignment:
| Q |
157 |
atcttcacaatgatatacaaacccaaagaacaagagaaagcttcactaacgatccagga |
215 |
Q |
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| T |
35305557 |
atcttcagaatgatatacaaaccaacagaacaagagaaagtttcagtaacgatccagga |
35305615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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