View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4978_low_46 (Length: 226)

Name: NF4978_low_46
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4978_low_46
NF4978_low_46
[»] chr3 (7 HSPs)
chr3 (2-226)||(24640694-24640919)
chr3 (2-222)||(24691919-24692132)
chr3 (2-218)||(24675805-24676023)
chr3 (76-185)||(24719288-24719397)
chr3 (76-222)||(24677819-24677966)
chr3 (76-214)||(24686530-24686669)
chr3 (39-217)||(24714078-24714257)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 24640919 - 24640694
Alignment:
Q  2 catcacttttacttaacatgtgtggatttcccatgctattagactaatatgtcatcaaagtccttgcacctcgtaaaaccaatatggatttcacgaaatg 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24640919 catcacttttacttaacatgtgtggatttcccatgctattagactaatatgtcatcaaagtccttgcacctcgtaaaaccaatatggatttcacgaaatg 24640820  T
Q  102 gcaagggattaggaagatttgtcctgcaattaacaaaattttgatatatccctgaaattaaaaattctcgaccatattagatattaatga-tagattgac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  24640819 gcaagggattaggaagatttgtcctgcaattaacaaaattttgatatatccctgaaattaaaaattctcaaccatattagatattaatgattagattgac 24640720  T
Q  201 tgatccaaaaggccttacagtgccga 226  Q
    ||||||||||||||||||||||||||    
T  24640719 tgatccaaaaggccttacagtgccga 24640694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 24692132 - 24691919
Alignment:
Q  2 catcacttttacttaacatgtgtggatttcccatgctattagactaatatgtcatcaaagtccttgcacctcgtaaaaccaatatggatttcacgaaatg 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24692132 catcacttttacttaacatgtgtggatttcccatgctattagactaatatgtcatcaaagtccatgcacctcgtaaaaccaatatggatttcacgaaatg 24692033  T
Q  102 gcaagggattaggaagatttgtcctgcaattaacaaaattttgatatatccctgaaattaaaaattctcgaccatattagatattaatga-tagattgac 200  Q
    ||||||         |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||  |||| |||||||||    
T  24692032 gcaagg---------gatttgtcctgcaattgacaaaattttaatatatccctgaaattaaaaattctcgaccatattagatatcgatgactagattgac 24691942  T
Q  201 tgatcc-aaaaggccttacagtg 222  Q
     ||||| ||||||||||||||||    
T  24691941 cgatccaaaaaggccttacagtg 24691919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 24676023 - 24675805
Alignment:
Q  2 catcacttttacttaacatgtgtggatttcccatgctattagactaatatgtcatcaaagtccttgcacctcgtaaaa-ccaatatggatttcacgaaat 100  Q
    |||| ||||||||||||||||||||| || || |||||||||| || ||| ||||  |||||| |||||||||||||| |||||||| ||||||| || |    
T  24676023 catcccttttacttaacatgtgtggacttgccgtgctattagaatattatttcattgaagtccatgcacctcgtaaaaaccaatatgaatttcacaaatt 24675924  T
Q  101 ggcaagggattaggaagatttgtcctgcaattaacaaaattttgatatatccctgaaattaaaaattctcgaccatattagatattaatga-tagattga 199  Q
    |||||||||| ||||||||||||||||||| ||||||||||| || ||||||||||||| |||||| ||||| |||||||||||| ||||| ||||||||    
T  24675923 ggcaagggataaggaagatttgtcctgcaactaacaaaatttcgacatatccctgaaataaaaaatgctcgatcatattagatatcaatgactagattga 24675824  T
Q  200 ctgatccaaaaggccttac 218  Q
    | |||||||||||||||||    
T  24675823 cagatccaaaaggccttac 24675805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 76 - 185
Target Start/End: Complemental strand, 24719397 - 24719288
Alignment:
Q  76 aaaaccaatatggatttcacgaaatggcaagggattaggaagatttgtcctgcaattaacaaaattttgatatatccctgaaattaaaaattctcgacca 175  Q
    |||||||||| ||||||||| ||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| ||||||||||  ||    
T  24719397 aaaaccaatacggatttcacaaaatggcaagggattaggaagttttgtcctgcaactaagaaaattttgatatatccctgaaattcaaaattctcggtca 24719298  T
Q  176 tattagatat 185  Q
    |||| |||||    
T  24719297 tatttgatat 24719288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 76 - 222
Target Start/End: Complemental strand, 24677966 - 24677819
Alignment:
Q  76 aaaaccaatatggatttcacgaaatggcaagggattaggaagatttgtcctgcaattaacaaaattttgatatatccctgaaattaaaaattctcgacca 175  Q
    |||||||||| ||||||||  ||||||||||||||| ||||| ||| |||| ||  ||||||||||||||||||||||||||||| ||||||||||  ||    
T  24677966 aaaaccaatacggatttcaaaaaatggcaagggattgggaagttttatcctccagctaacaaaattttgatatatccctgaaattcaaaattctcggtca 24677867  T
Q  176 tattagatattaatga-tagattgactgatccaaaaggccttacagtg 222  Q
    ||||||||||   ||| ||| ||||  |||||||||||||||| ||||    
T  24677866 tattagatatcggtgactaggttgatcgatccaaaaggccttatagtg 24677819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 76 - 214
Target Start/End: Complemental strand, 24686669 - 24686530
Alignment:
Q  76 aaaaccaatatggatttcacgaaatggcaagggattaggaagatttgtcctgcaattaacaaaattttgatatatccctgaaattaaaaattctcgacca 175  Q
    ||||||||||  |||||||| |||||  ||||||||  | || |||||||||||| |||||||||||  |||||||| || |||| ||||||||||| ||    
T  24686669 aaaaccaatactgatttcacaaaatgagaagggattgcggagttttgtcctgcaactaacaaaatttcaatatatccttggaattgaaaattctcgatca 24686570  T
Q  176 tattagatattaatga-tagattgactgatccaaaaggcc 214  Q
    |||||||||| | ||| ||||||||  |||||||||||||    
T  24686569 tattagatatcagtgactagattgatcgatccaaaaggcc 24686530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 39 - 217
Target Start/End: Complemental strand, 24714257 - 24714078
Alignment:
Q  39 attagactaatatgtcatcaaagtccttgcacctcgtaaaa-ccaatatggatttcacgaaatggcaagggattaggaagatttgtcctgcaattaacaa 137  Q
    ||||||||||||||  ||||| |||| || |||| |||||| |||||| ||||||||  ||||| ||||| ||||||||| ||||| |||||| || |||    
T  24714257 attagactaatatgcgatcaatgtccatgtaccttgtaaaaaccaataaggatttcataaaatgacaaggaattaggaag-tttgttctgcaactatcaa 24714159  T
Q  138 aattttgatatatccctgaaattaaaaattctcgaccatattagatattaatga-tagattgactgatccaaaaggcctta 217  Q
     || | ||||||| ||||| ||| ||||||||| | |||||||||||| | ||| |||||||   ||||||||||||||||    
T  24714158 catgtcgatatatacctgatattgaaaattctcaatcatattagatatcagtgactagattggtggatccaaaaggcctta 24714078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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