View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4978_low_48 (Length: 223)
Name: NF4978_low_48
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 592807 - 593021
Alignment:
| Q |
1 |
tatattaaaaggtaagggaaaaaatttaccttttgatattgttaatactactttaaatttgaaaatgacaaattaatataaacacaaaatttctagaaaa |
100 |
Q |
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| T |
592807 |
tatattaaaaggtaagggaaaaaatttaccttttgatattgttaatactactttaaatttgaaaatgacaaattaatagaaacacaaaatttctagaaaa |
592906 |
T |
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| Q |
101 |
acaacacagggaacagatggagtaacatttattctcttaattttctactcattagtgtt---actcatcagttctcattccagagctaaaattcttcact |
197 |
Q |
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| T |
592907 |
acaacacagggaacagatggagtaacatttattctcttaattttctactcattagtgttataactcatcagttctcattccagagctaaaattcttcact |
593006 |
T |
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| Q |
198 |
tagaatactgcctat |
212 |
Q |
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||||||||||||||| |
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| T |
593007 |
tagaatactgcctat |
593021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 7 - 212
Target Start/End: Complemental strand, 579612 - 579400
Alignment:
| Q |
7 |
aaaaggtaagggaaaaaatttaccttttgatatt----gttaatactactttaaatttgaaaatgacaaattaatataaacacaaaatttctagaaaaac |
102 |
Q |
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|||||| ||||||||||| || |||||| || || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
579612 |
aaaaggcaagggaaaaaagtttccttttaatgttaatagttaatactactttaaatttgaaaatgacaaattaatagaaacacaaaatttctagaaaaac |
579513 |
T |
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| Q |
103 |
aacacagggaacagatggagtaacatttattctcttaattttctactcattagtgtt---actcatcagttctcattccagagctaaaattcttcactta |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
579512 |
aacacagggaacagatggagtaacatttattctcttaattttctactcattagtgttataactcatcagttctcattccagagctaaaattcttcactta |
579413 |
T |
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| Q |
200 |
gaatactgcctat |
212 |
Q |
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||||||||||||| |
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| T |
579412 |
gaatactgcctat |
579400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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