View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4978_low_6 (Length: 478)
Name: NF4978_low_6
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 15 - 429
Target Start/End: Complemental strand, 52170674 - 52170260
Alignment:
| Q |
15 |
gacatcatcataaagtttaaacaaactgctattgaatgtgatgttgtcgacaggaacacaaacatcatctctcgagtaatcttccctagtaactctgagt |
114 |
Q |
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| T |
52170674 |
gacatcatcataaagtttaaacaaagtgctattgaatgtgatgttgtcgacaggaacacaaacatcatctctcgagtaatcttccctagtaactctgagc |
52170575 |
T |
|
| Q |
115 |
ttctgtgttgaattgtcccattcaagaatactgtatttcaagaaagaatcatccattgttaacttggggacactgtcctcacatgtgagttccatattag |
214 |
Q |
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| T |
52170574 |
ttctgtgttgaattgtcccattcaagaatactgtatttcaagaaagaatcatccgttgttaacttggggacactgtcctcacatgtgagttccatattag |
52170475 |
T |
|
| Q |
215 |
gatcatcattcacaccgcaatactttcctctatttcctccccagaacggatacttgagatttgtgatgttgctactttcgcagataaaagcgtcgttgca |
314 |
Q |
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| T |
52170474 |
gatcatcattcacaccgcaatactttcctctatttcctcccctgaacggatacttgagatttgtgatgttgctactttcgcagataaaagcgtcgttgca |
52170375 |
T |
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| Q |
315 |
gttcgtgtgttggatatcatcattctcacagagacatgatggaaaattggtgattgagatcatcaaaagtgctagaacaaacaagttcattcttgtccta |
414 |
Q |
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| T |
52170374 |
gttcgtgtgttggatatcatcattctcacagagacatgatggaaaattggtgattgagatcatcaaaagtgctagaacaaacaagttcattcttgcccta |
52170275 |
T |
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| Q |
415 |
gaacaaagaagtgtg |
429 |
Q |
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| T |
52170274 |
gaacaaagaagtgtg |
52170260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 105 - 388
Target Start/End: Original strand, 31610369 - 31610646
Alignment:
| Q |
105 |
aactctgagtttctgtgttgaattgtcccattcaagaatactgtatttcaagaaagaatcatccattgttaacttggggacactgtcctcacatgtgagt |
204 |
Q |
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| T |
31610369 |
aactctgagtctctgtgttgtattgtcccattcaagaatacggtatttgaccaaatta------attgttatcttagggacacttccttcgcatacgagc |
31610462 |
T |
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| Q |
205 |
tccatattaggatcatcattcacaccgcaatactttcctctatttcctccccagaacggatacttgagatttgtgatgttgctactttcgcagataaaag |
304 |
Q |
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| T |
31610463 |
tccatcttaggatcaccagaaacaccacaatacttttctctgtttcctccccagtacggatacttgaggtttgagatgctgctactttcgcaggtaaaag |
31610562 |
T |
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| Q |
305 |
cgtcgttgcagttcgtgtgttggatatcatcattctcacagagacatgatggaaaattggtgattgagatcatcaaaagtgcta |
388 |
Q |
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| T |
31610563 |
cgttgttgcagttagtgtgttggatattattgttgtcacaaagacatgttggaattttggtgattgagatcatcaaaactgcta |
31610646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 31621194 - 31621257
Alignment:
| Q |
89 |
agtaatcttccctagtaactctgagtttctgtgttgaattgtcccattcaagaatactgtattt |
152 |
Q |
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| T |
31621194 |
agtaatcgtctctagcgactgtgagtttctgtgttgtattgtcccattcaagaatacggtattt |
31621257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 31636189 - 31636252
Alignment:
| Q |
89 |
agtaatcttccctagtaactctgagtttctgtgttgaattgtcccattcaagaatactgtattt |
152 |
Q |
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| T |
31636189 |
agtaatcgtctctagcgactgtgagtttctgtgttgtattgtcccattcaagaatacggtattt |
31636252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 287
Target Start/End: Original strand, 31597456 - 31597517
Alignment:
| Q |
226 |
acaccgcaatactttcctctatttcctccccagaacggatacttgagatttgtgatgttgct |
287 |
Q |
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| T |
31597456 |
acaccacaataatttcctctattttctccccagaatggatattcaagatttgtgatgttgct |
31597517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 31621351 - 31621415
Alignment:
| Q |
252 |
tccccagaacggatacttgagatttgtgatgttgctactttcgcagataaaagcgtcgttgcagt |
316 |
Q |
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| T |
31621351 |
tccccagaatggatacttgaggtttgtgatgctgctacttccgcattcaaaagcttcgttgcagt |
31621415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 31636346 - 31636410
Alignment:
| Q |
252 |
tccccagaacggatacttgagatttgtgatgttgctactttcgcagataaaagcgtcgttgcagt |
316 |
Q |
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| T |
31636346 |
tccccagaatggatacttgaggtttgtgatgctgctacttccgcattcaaaagcttcgttgcagt |
31636410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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