View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4978_low_8 (Length: 464)

Name: NF4978_low_8
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4978_low_8
NF4978_low_8
[»] chr6 (14 HSPs)
chr6 (16-206)||(33390179-33390369)
chr6 (276-437)||(25209292-25209451)
chr6 (16-201)||(33402721-33402906)
chr6 (24-193)||(31566925-31567093)
chr6 (17-192)||(33306594-33306772)
chr6 (16-200)||(33059670-33059854)
chr6 (16-206)||(33642389-33642575)
chr6 (16-201)||(33360186-33360371)
chr6 (16-206)||(33412060-33412250)
chr6 (16-170)||(9168881-9169034)
chr6 (26-206)||(33264766-33264946)
chr6 (24-170)||(31560628-31560774)
chr6 (18-206)||(33273901-33274089)
chr6 (16-193)||(33287649-33287826)
[»] chr2 (1 HSPs)
chr2 (16-170)||(17438647-17438801)
[»] scaffold1749 (1 HSPs)
scaffold1749 (16-141)||(106-231)
[»] scaffold0428 (1 HSPs)
scaffold0428 (16-141)||(8867-8992)
[»] chr4 (3 HSPs)
chr4 (12-145)||(31501940-31502073)
chr4 (13-148)||(31496768-31496903)
chr4 (12-148)||(31476812-31476951)


Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 33390179 - 33390369
Alignment:
16 catcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaagaattgcactccaatat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33390179 catcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaagaattgcactccaatat 33390278  T
116 attcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataacattataccatcacgtac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
33390279 attcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataaaattataccatcacgtac 33390369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 276 - 437
Target Start/End: Original strand, 25209292 - 25209451
Alignment:
276 tttgaaataacaagtttggatcgatttaaaatacctttttaaactaagaaaaagcacaatgatgattatatattgacaatgatctaagttactaagaaat 375  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
25209292 tttgaaataacaagtttggatcgatttaaaatacctttttaaacaaagaaaaagcacaatgatgattata--ttgacaatgatctaagttactaagaaat 25209389  T
376 ttttgttcatcaagctttctaagatcacaaagtgttgcaaactatacttcaatatatataga 437  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
25209390 ttttgttcatcaagctttctaagatcacaaagtgttgtaaactatacttcaatatatataga 25209451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 33402721 - 33402906
Alignment:
16 catcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaagaattgcactccaatat 115  Q
    |||||||  ||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||    
33402721 catcaaccaagtccaaaaccaaatgattttttaatgcttctataggagaatcaatcccaactaaatcttttgaaacacatgaagatttgcactccaatat 33402820  T
116 attcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataacattataccatca 201  Q
    |||||||||| |||||||||||||||||||||| ||| |||||||||||||||||| ||| ||||||||| ||||||||| |||||    
33402821 attcattatcttttgaacaatctttttaatctctccagcttgtggcctgaaagttccaaaagttgttcaaaaacattatatcatca 33402906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 31567093 - 31566925
Alignment:
24 gagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaagaattgcactccaatatattcatta 123  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||    
31567093 gagtccaaaagcaaatgattttgtaacgcttctataggagaatcaatcccaactaaatcttttgaaacacatgaagatttgcactccaatatattcatta 31566994  T
124 tcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataacatta 193  Q
    |  ||||| |||||||||||||||| | |  |||||||||||||||| |||| |||||||||||||||||    
31566993 ttgtttgagcaatctttttaatctctcaagattgtggcctgaaagtt-aaaaagttgttcaataacatta 31566925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 33306594 - 33306772
Alignment:
17 atcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaagaattgcactccaatata 116  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||| | ||||||| |||||||||||||||    
33306594 atcaaccgagtccaaaagcaaatgattttttaatgcttctataggagaatcaatcccaactaaatcttttgaaatatatgaagatttgcactccaatata 33306693  T
117 ttcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaa---agttcaaaatgttgttcaataacatt 192  Q
     |||||||| |||||||||||||||||||| | ||| |||||||||||||   ||||||||| ||||||||||||||||    
33306694 ctcattatcttttgaacaatctttttaatcactccagcttgtggcctgaaattagttcaaaaagttgttcaataacatt 33306772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 33059670 - 33059854
Alignment:
16 catcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaagaattgcactccaatat 115  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| | ||||| ||||||||    
33059670 catcaactgagttcaaaagcaaatgattttgtaatgcttgtataggagaatcaatcccaactaaatcttttgaaacacatgaatatttgcattccaatat 33059769  T
116 attcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataacattataccatc 200  Q
    ||| |||||| |||||||||||| |||||| || | | || |||||||||||||||||||  ||||||| |||||||||| ||||    
33059770 attgattatcttttgaacaatctctttaatttctctagctagtggcctgaaagttcaaaaaattgttcagtaacattatatcatc 33059854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 33642575 - 33642389
Alignment:
16 catcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaagaattgcactccaatat 115  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||| | |||| |||||||| |||||    
33642575 catcaactgagtccaaaagcaaatgattttgtaatgcttttataggagaatcaatcccaactaaatcttttgaaacacttaaagacttgcactctaatat 33642476  T
116 attcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataacattataccatcacgtac 206  Q
    ||| |||||| ||||||||||||||||||||||  || |||||||||||||| |||||    |||||||||||||||| | ||||||||||    
33642475 attgattatcttttgaacaatctttttaatctctgcagcttgtggcctgaaa-ttcaa---tttgttcaataacattaaatcatcacgtac 33642389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 33360186 - 33360371
Alignment:
16 catcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaagaattgcactccaatat 115  Q
    ||||||| |||| |||||||||||||||||||||||||| |||||||||||||||| | ||||||||||| |||||||||||| | ||||| ||||||||    
33360186 catcaaccgagttcaaaagcaaatgattttgtaatgcttgtataggagaatcaatctcaactaaatcttttgaaacacatgaatatttgcattccaatat 33360285  T
116 attcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataacattataccatca 201  Q
    ||| |||||| ||||||||| || |||||| || | | || ||||||||||||||||||| ||||||||||||||||||| |||||    
33360286 attgattatcttttgaacaacctctttaatttctctagctagtggcctgaaagttcaaaaagttgttcaataacattatatcatca 33360371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 33412060 - 33412250
Alignment:
16 catcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaagaattgcactccaatat 115  Q
    ||||||| ||||||||||| ||||||||||||||| |||||||  ||||||  ||||| ||||||||||| ||||   ||||||| || || ||||||||    
33412060 catcaaccgagtccaaaagtaaatgattttgtaatacttctatccgagaatttatcccaactaaatcttttgaaatgaatgaagatttacaatccaatat 33412159  T
116 attcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataacattataccatcacgtac 206  Q
    |||||||||  |||||||||||||||||||||| ||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||||    
33412160 attcattatattttgaacaatctttttaatctctccagcttgtggcctgaaagttcagaaagttgttcaataacattatatcatcacgtac 33412250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 9168881 - 9169034
Alignment:
16 catcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaagaattgcactccaatat 115  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||| ||||||||| ||||    
9168881 catcaattgagtccaaaagcaaatgattttgtaatgcttctataggagaattaatcccaactaaatcttttgaaacacatgaagatttgcactcc-atat 9168979  T
116 attcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagtt 170  Q
     ||||||||| |||| |||||||||||| ||||| ||  ||||||||||||||||    
9168980 gttcattatcttttgtacaatctttttagtctcagcagattgtggcctgaaagtt 9169034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 26 - 206
Target Start/End: Original strand, 33264766 - 33264946
Alignment:
26 gtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaagaattgcactccaatatattcattatc 125  Q
    ||||||||| |||||||||||||||||||||| | ||||||| ||| | ||||| ||||| |||||||||||||| ||||| |||||| || ||||||||    
33264766 gtccaaaaggaaatgattttgtaatgcttctaaacgagaatctatcgcaactaagtcttttgaaacacatgaagatttgcattccaatgtactcattatc 33264865  T
126 ctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataacattataccatcacgtac 206  Q
     |||||||||||||||||||||| ||| |||| |||||| ||||||||||  || |||||||| |||||| ||||||||||    
33264866 ttttgaacaatctttttaatctctccagcttgcggcctgtaagttcaaaaaattattcaataatattatatcatcacgtac 33264946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 24 - 170
Target Start/End: Complemental strand, 31560774 - 31560628
Alignment:
24 gagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaagaattgcactccaatatattcatta 123  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||| ||| ||| ||||||||||||||    
31560774 gagtccaaaagcaaatgattttgtaatgcttctataggagaattaatcccaactaaatcttttgaaacacatgaagatttgtacttcaatatattcatta 31560675  T
124 tcctttgaacaatctttttaatctcaccaacttgtggcctgaaagtt 170  Q
    || |  ||||||||||||| ||||| | |  ||||||||||||||||    
31560674 tcgtccgaacaatctttttcatctctcgagattgtggcctgaaagtt 31560628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 33273901 - 33274089
Alignment:
18 tcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaagaattgcactccaatatat 117  Q
    ||||| ||||||||||| ||||||||||||||| | |||| | ||||||| ||||| ||||||||||| |||| ||||||||| ||| ||| ||||||||    
33273901 tcaaccgagtccaaaagtaaatgattttgtaatccgtctaaacgagaatctatcccaactaaatcttttgaaaaacatgaagatttgtacttcaatatat 33274000  T
118 tcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataacattataccatcacgtac 206  Q
    |||  ||| |||||||||||||||||||||| ||| |||| |||||| ||||||||||  || |||||||| |||||| ||||||||||    
33274001 tcaagatcgtttgaacaatctttttaatctctccagcttgcggcctgtaagttcaaaaaatttttcaataatattatatcatcacgtac 33274089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 33287649 - 33287826
Alignment:
16 catcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaagaattgcactccaatat 115  Q
    ||||||| || |||||| |||||||| ||||||| |||||||||||||||| |||| | ||||||||||| ||||| |||||||| ||||||||||||||    
33287649 catcaaccgaatccaaatgcaaatgactttgtaaggcttctataggagaattaatcgcaactaaatcttttgaaacccatgaagatttgcactccaatat 33287748  T
116 attcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataacatta 193  Q
    |||||||||| | ||||||||| || |||||||  ||  |||||||||| | |||||||| |||||||||||| ||||    
33287749 attcattatcgtctgaacaatcattctaatctctgcagattgtggcctggacgttcaaaaagttgttcaataatatta 33287826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 17438801 - 17438647
Alignment:
16 catcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaagaattgcactccaatat 115  Q
    ||||||| ||||||||||| |||||||||| ||||||||||||| ||||||  ||||| ||||||||||| |||  ||||||||| ||||| ||||||||    
17438801 catcaaccgagtccaaaagtaaatgattttttaatgcttctatacgagaatttatcccaactaaatcttttgaattacatgaagatttgcattccaatat 17438702  T
116 attcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagtt 170  Q
    |||||||||| ||||||||||||||||||||||  ||  ||||||||||||||||    
17438701 attcattatcttttgaacaatctttttaatctctgcacattgtggcctgaaagtt 17438647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 106 - 231
Alignment:
16 catcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaagaattgcactccaatat 115  Q
    ||||||| || | |||||| || |||| || |||||||||| || ||||||  ||||| ||||||||||| |||||  ||||||| ||||||| ||||||    
106 catcaaccgaattcaaaagtaactgatgttttaatgcttctgtacgagaatttatcccaactaaatcttttgaaacgaatgaagatttgcacttcaatat 205  T
116 attcattatcctttgaacaatctttt 141  Q
    |||||  ||| |||||||||||||||    
206 attcaagatcgtttgaacaatctttt 231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 8867 - 8992
Alignment:
16 catcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaagaattgcactccaatat 115  Q
    ||||||| || | |||||| || |||| || |||||||||| || ||||||  ||||| ||||||||||| |||||  ||||||| ||||||| ||||||    
8867 catcaaccgaattcaaaagtaactgatgttttaatgcttctgtacgagaatttatcccaactaaatcttttgaaacgaatgaagatttgcacttcaatat 8966  T
116 attcattatcctttgaacaatctttt 141  Q
    |||||  ||| |||||||||||||||    
8967 attcaagatcgtttgaacaatctttt 8992  T

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Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 31502073 - 31501940
Alignment:
12 acatcatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaagaattgcactcca 111  Q
    ||||||||||| |||||||| || ||| | |||| |||||||| |||| ||||| |||| || ||||  ||||| ||||||||||| || ||||| ||||    
31502073 acatcatcaacagagtccaagagtaaaagtttttctaatgcttgtatatgagaaacaattccaactatgtcttttgaaacacatgatgagttgcaatcca 31501974  T
112 atatattcattatcctttgaacaatctttttaat 145  Q
    | ||||| ||||||||||| || || ||||||||    
31501973 aaatatttattatcctttggacgatatttttaat 31501940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 31496903 - 31496768
Alignment:
13 catcatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaagaattgcactccaa 112  Q
    |||||| ||| ||||||||||| ||| | |||| ||||  ||  ||| |||| || ||||| |||||||| || |||||||||  ||| ||||| |||||    
31496903 catcattaaccgagtccaaaagtaaaagcttttctaatttttgcatatgagagtccatcccaactaaatcatttgaaacacatatagatttgcaatccaa 31496804  T
113 tatattcattatcctttgaacaatctttttaatctc 148  Q
     |||| |||||||||||||||||| |||||||||||    
31496803 aatatccattatcctttgaacaatttttttaatctc 31496768  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 31476951 - 31476812
Alignment:
12 acatcatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaagaa---ttgcact 108  Q
    ||||||||||| ||||||||||| ||| | |||| |||| ||| | |||||||||| ||||| |||||||| || ||| ||| ||||||    ||||  |    
31476951 acatcatcaacagagtccaaaagtaaaagcttttctaattcttgtctaggagaatccatcccaactaaatcgtttgaagcacttgaagataatttgctgt 31476852  T
109 ccaatatattcattatcctttgaacaatctttttaatctc 148  Q
    |||| ||| | ||||||| |||||| ||||||||||||||    
31476851 ccaaaatagttattatccgttgaactatctttttaatctc 31476812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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