View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4978_low_9 (Length: 463)
Name: NF4978_low_9
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 34653701 - 34653259
Alignment:
| Q |
1 |
aagaatcggagtaacagttcaaagggaaaactactcttgaaatacataatggaagtcaatgatgctaaggaagctgaaaaggagctgatgacgaattcta |
100 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34653701 |
aagaatcggagtaatagttcaaagggaaaactactcttgaaatacataatggaagtcaatgatgctaaggaagctgaaaaggagctgatgacgaattcta |
34653602 |
T |
|
| Q |
101 |
cgagcgtgatgaaatttgggaatcacccaaactttgaaagctcggagagtgattttagctctgaaggtttggttaatccaaatgaggaaatggatgggta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34653601 |
cgagcgtgatgaaatttgggaatcacccaaactttgaaagctcggagagtgattttagctctgaaggtttggttaatccaaatgaggaaattgatgggta |
34653502 |
T |
|
| Q |
201 |
tgctccaatgatgttcaatggtgatgatggaatggcaagtggatctggcaccacaacgagttatgattttggaacatatggaatggagttttttcctgag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34653501 |
tgctccaatgatgttcaatggtgatgatggaatggcaagtggatctggcaccacaacgagttatgattttggaacatatggaatggagttttttcccgag |
34653402 |
T |
|
| Q |
301 |
gttccaatgaagcaggaaattgatttcatgggtatgatctatagaaatccttaaggcgagtatggtttatgactaatgaagttttcatggatctttttct |
400 |
Q |
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| T |
34653401 |
gttccaatgaagcaggaaattgatttcatgggtatgatctatagaaatccttaaggcgagtatggtttatgactaatgaagttttcatggatctttttct |
34653302 |
T |
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| Q |
401 |
tatttctgttattgtttttaattgtgtttgtgttatgatgttct |
444 |
Q |
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| T |
34653301 |
tatttctgttactg-ttttaattgtgtttgtgttatgatgttct |
34653259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 11 - 355
Target Start/End: Complemental strand, 17173922 - 17173578
Alignment:
| Q |
11 |
gtaacagttcaaagggaaaactactcttgaaatacataatggaagtcaatgatgctaaggaagctgaaaaggagctgatgacgaattctacgagcgtgat |
110 |
Q |
| |
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|||| ||||||||||||| ||| || ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||| ||||||||||| |||| |
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| T |
17173922 |
gtaagagttcaaagggaatacttcttctgaaatacataatggaagtcaccgatgctaaggaagttgaaaaggagccgatgacgtattctacgagcatgat |
17173823 |
T |
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| Q |
111 |
gaaatttgggaatcacccaaactttgaaagctcggagagtgattttagctctgaaggtttggttaatccaaatgaggaaatggatgggtatgctccaatg |
210 |
Q |
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| | || ||||| | || ||||||||||| ||||||||||||| ||||||||||| || |||| | | |||| || ||||| ||||||| |
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| T |
17173822 |
ggatattaaaaatcaactgaattttgaaagctcaaagagtgattttagaactgaaggtttgactactccagagaacaaaatttgtgagtatgttccaatg |
17173723 |
T |
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| Q |
211 |
atgttcaatggtgatgatggaatggcaagtggatctggcaccacaacgagttatgattttggaacatatggaatggagttttttcctgaggttccaatga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| || |||||| |||||| |||||||||| |||||||||||||||||||| | | |
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| T |
17173722 |
atgttcaatggtgatgatggaatggcaagtggatctggtaccacaatgaattatgagtttggatcatatggaattgagttttttcctgaggttcctctta |
17173623 |
T |
|
| Q |
311 |
agcaggaaattgatttcatgggtatgatctatagaaatccttaag |
355 |
Q |
| |
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| || ||||||||| |||||| |||||| ||| ||| ||||||| |
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| T |
17173622 |
atcaagaaattgatctcatggagatgatcaataaaaacccttaag |
17173578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 13643824 - 13644065
Alignment:
| Q |
1 |
aagaatcggagtaacagttcaaagggaaaactactcttgaaatacataatggaagtcaatgatgctaaggaagctgaaaaggagctgatgacgaattcta |
100 |
Q |
| |
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|||||||| |||||||||||||||||| ||| || |||||||||||||||||||||| | ||| ||| ||| |||||||||| ||||||| |||||| |
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| T |
13643824 |
aagaatcgaggtaacagttcaaagggaacactgcttttgaaatacataatggaagtcacttgtgccaagaaagttgaaaaggagatgatgactaattctc |
13643923 |
T |
|
| Q |
101 |
cgagcgtgatgaaatttgggaatcacccaaactttgaaagctcggagagtgattttagctctgaaggtttggttaatccaaatgaggaaatggatgggta |
200 |
Q |
| |
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|||| ||||||| | |||||||| ||||| | |||||| || |||||||||||| ||||||||||||| || |||| | || ||||| | ||| || |
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| T |
13643924 |
tgagcatgatgaatatcgggaatcagccaaattatgaaagttctgagagtgattttttctctgaaggtttgactactccagaagatgaaattggtggcta |
13644023 |
T |
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| Q |
201 |
tgctccaatgatgttcaatggtgatgatggaatggcaagtgg |
242 |
Q |
| |
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| T |
13644024 |
tgtgccaatgatgttcaatgatgatgatggaatggcaagtgg |
13644065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 13706273 - 13706514
Alignment:
| Q |
1 |
aagaatcggagtaacagttcaaagggaaaactactcttgaaatacataatggaagtcaatgatgctaaggaagctgaaaaggagctgatgacgaattcta |
100 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| || |||||||||||||||||||| | | ||| ||| ||| |||||||||| |||||| |||||| |
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| T |
13706273 |
aagaatcgaggtaacagttcaaagggaacactgcttttgaaatacataatggaagttacttctgccaagaaagttgaaaaggagatgatgaataattctc |
13706372 |
T |
|
| Q |
101 |
cgagcgtgatgaaatttgggaatcacccaaactttgaaagctcggagagtgattttagctctgaaggtttggttaatccaaatgaggaaatggatgggta |
200 |
Q |
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||||| ||||||| | |||||||| ||||| | |||||| || |||||||||||| ||||||||||||| || |||| | || | ||| | ||| || |
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| T |
13706373 |
cgagcatgatgaatatcgggaatcagccaaattatgaaagttctgagagtgattttttctctgaaggtttgactactccagaagatggaattggtggcta |
13706472 |
T |
|
| Q |
201 |
tgctccaatgatgttcaatggtgatgatggaatggcaagtgg |
242 |
Q |
| |
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|| |||||||||||||||| ||||||||||||||||||||| |
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| T |
13706473 |
tgtgccaatgatgttcaatgatgatgatggaatggcaagtgg |
13706514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 356
Target Start/End: Original strand, 13644067 - 13644155
Alignment:
| Q |
268 |
tttggaacatatggaatggagttttttcctgaggttccaatgaagcaggaaattgatttcatgggtatgatctatagaaatccttaagg |
356 |
Q |
| |
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|||||| || |||||||||||||||||||||| |||| | |||||||||||||| |||||| | ||| |||||||| |||||||| |
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| T |
13644067 |
tttggatcaaatggaatggagttttttcctgaaattcctaaaaagcaggaaattgacctcatggagaagatatatagaaacccttaagg |
13644155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 13706526 - 13706571
Alignment:
| Q |
278 |
atggaatggagttttttcctgaggttccaatgaagcaggaaattga |
323 |
Q |
| |
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|||||||||||||||||||||| |||| || |||||||||||||| |
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| T |
13706526 |
atggaatggagttttttcctgaaattcctataaagcaggaaattga |
13706571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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