View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4979-Insertion-2 (Length: 830)
Name: NF4979-Insertion-2
Description: NF4979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4979-Insertion-2 |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0110 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 500; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 172 - 830
Target Start/End: Complemental strand, 41941603 - 41940946
Alignment:
| Q |
172 |
cggagttaattctgtcagcaattgcaccattgttggtggtggtaccctaaaccctaaaaaattgatttaatttgttattgtaatttccaatgcccacnnn |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41941603 |
cggagttaattctgtcagcaattgcaccattgttggtggtggtactctaaaccctaaaaaattgatttaatttgttattgttatttccaatgcccacttt |
41941504 |
T |
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| Q |
272 |
nnnnnagtacctctttaccacaataactcattaattctattgtatgatatttttgcttcaatctacaattgtttattcaaataatgatttttcaatgcgt |
371 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41941503 |
tttttagtacctctttaccacaataactcattatttctattgtat-atatttttgcttcaatctacaattgtttattcaaataatgatttttcaattcgt |
41941405 |
T |
|
| Q |
372 |
atctttagattcaaatgtcaaaaaatgnnnnnnnnnnncttttcagattttcatctgaagaggtgtctgcacagaatcaagtgaaagcttccgttcaacg |
471 |
Q |
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| T |
41941404 |
atctttagattcaaatgtcaaaaaatgtttttttttt-cttttcagattttcatctgaagaggtgtctgcacagaatcaagtgaaagcttccgttcaacg |
41941306 |
T |
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| Q |
472 |
aagaatacggcaaagtattgcagatgaggtgatgtcacnnnnnnnnnnnnnnngggttcgttttttgttgtccttagatatcactaattgtatgtgggtt |
571 |
Q |
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| T |
41941305 |
aagaatacggcaaagtattgcagatgaggtgatgtcacttttttttttttt--gggttcgttttttgttgtccttagatatcactaattgtatgtgggtt |
41941208 |
T |
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| Q |
572 |
tggtgccatgattttgttgaagcttcaaaatgttgtttttgccgaaacc---gtggcttttatcgtcaatccaaacatgcactaattcaccaaaatatgc |
668 |
Q |
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| T |
41941207 |
tggtgccatgattctgttgaagcttcaaaatgttatttttgccgaaaccacggtggcttttatcgtcaatccaaacgtgcactaattcaccaaaatatgc |
41941108 |
T |
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| Q |
669 |
atcttttttattgcacgtgaatttgtgttaactatgtgactattaattaatgtaaatcactaaactgcagtatccaggacttgaaccagtgttggatgat |
768 |
Q |
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| T |
41941107 |
atcttttttattgcacgtgaatttgtgttaactatgtgactattaattaatgtaaatcactaaactgcagtatccaggacttgaaccagtgttggatgat |
41941008 |
T |
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| Q |
769 |
atacttcccaagaagtcccctcttatagttgctaaatggttcgtttgtgaattgtagttcta |
830 |
Q |
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| T |
41941007 |
atacttcccaagaagtcccctcttatagttgctaaatggttcgtttgtgaattgtagttcta |
41940946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 41941767 - 41941637
Alignment:
| Q |
8 |
acacagacacagattcactttcaccccaacatcatcaccttcaactcaacgcgcaataagatgttcaaaaagtacactctttctcactctactctctata |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41941767 |
acacagacacagattcactttcaccccaacatcatcaccttcaactcaacgcaccataagatgttcaaaaagtacactctttctcactctactctctata |
41941668 |
T |
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| Q |
108 |
ttctaattcatccattcaccatttgcttcta |
138 |
Q |
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| T |
41941667 |
ttctaattcatccattcaccatttgcttcta |
41941637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 690 - 830
Target Start/End: Complemental strand, 41926527 - 41926379
Alignment:
| Q |
690 |
tttgtgttaactatgtgactattaattaatgtaaatcactaaactgcagtatccaggacttgaaccagtgttggatgatatacttcccaagaagtcccct |
789 |
Q |
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| T |
41926527 |
tttgtgttaactatgtgactattaattaacctaaatcactaaactgcagtatccaggacttgaaccaatgttggatgatatacttcccaagaagtcccct |
41926428 |
T |
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| Q |
790 |
--------cttatagttgctaaatggttcgtttgtgaattgtagttcta |
830 |
Q |
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| T |
41926427 |
cttaatctcttatagttgctaaatggttcgtttgtgaattgtagttcta |
41926379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 580 - 618
Target Start/End: Complemental strand, 13469 - 13431
Alignment:
| Q |
580 |
tgattttgttgaagcttcaaaatgttgtttttgccgaaa |
618 |
Q |
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| T |
13469 |
tgattttgttgaagcttcaaaatgtagtttttggcgaaa |
13431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 580 - 618
Target Start/End: Complemental strand, 21206 - 21168
Alignment:
| Q |
580 |
tgattttgttgaagcttcaaaatgttgtttttgccgaaa |
618 |
Q |
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| T |
21206 |
tgattttgttgaagcttcaaaatgtagtttttggcgaaa |
21168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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