View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4979-Insertion-3 (Length: 544)
Name: NF4979-Insertion-3
Description: NF4979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4979-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 8 - 540
Target Start/End: Original strand, 45289470 - 45289994
Alignment:
| Q |
8 |
atatgaaggaacatgcctcctcctaggagatcctttcgaactatttcctccaataagaatcattcacaataaagaaaattaaacacaaaactgaaaccaa |
107 |
Q |
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| T |
45289470 |
atatgaaggaacatgcctcctcctaggagatcctttcgaactatttcctccaacaaaaatcattcacaataaagaaaattaaacacaaaactgaaaccaa |
45289569 |
T |
|
| Q |
108 |
agttgtccaagtttgtatctgcaatttaaaaacaaatacatgaagtaaggtttatataacttggctgaggaatcaaagaagaaaaaccaaaacaggacaa |
207 |
Q |
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| T |
45289570 |
agttgtccaagtttgtatctgcaatttaaaaacaaatacatgaagtaaggtttatataacttggctgaggaatcaaagaagaaaaaccaaaacaggacaa |
45289669 |
T |
|
| Q |
208 |
aaagctttttgattattcaatccataattggatagcgaaatttatagatcataagactaagaagaaagagagtgagacttgttcatagaaacaaaatatg |
307 |
Q |
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| T |
45289670 |
aaagctttttgattattcaatccataattggatagcgaaatttaaagatcataagacaaagaagaaagagagtgagacttgttcatacaaacaaaatatg |
45289769 |
T |
|
| Q |
308 |
acagtaaattatttcatcgagacaaaatcattattagacaaaagaagtataatttaaagatttccaatacatttatcaaactggggaaaagtttatgaat |
407 |
Q |
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| T |
45289770 |
acaataaattatttcatcgagacaaaatcattattagacaaaagaagtataatttaaagatttccaatacatttatcaaactggggaaaagtttatgaat |
45289869 |
T |
|
| Q |
408 |
taattggttagatactttcaaaatgagtctaagaaaaattatatatagtatagtaatttgagtttgataagttgtatgccatttcttattattatcctat |
507 |
Q |
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| T |
45289870 |
taattggttatatactttcaaaatgagtctaagaaaaattata-----tatagtaatttgagtttgataagttgtatgccatttc---ttattatcctat |
45289961 |
T |
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| Q |
508 |
aataataagacaattatatataaacattgtaaa |
540 |
Q |
| |
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| T |
45289962 |
aaaaataagacaattatatataaacattgtaaa |
45289994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 39204493 - 39204681
Alignment:
| Q |
8 |
atatgaaggaacatgcctcctcctaggagatcctttcgaactatttcctccaataagaa--tcattcacaataaagaaaattaaacacaaaactgaaacc |
105 |
Q |
| |
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|||||||||||||||||| ||||||||||| ||||| |||||||| ||||| |||| || || |||| |||||| ||| ||||||||||| || ||| |
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| T |
39204493 |
atatgaaggaacatgccttctcctaggagacccttttgaactattccctcccataacaatctccttcagaataaaataaagtaaacacaaaattgctacc |
39204592 |
T |
|
| Q |
106 |
aaagttgtccaagtttgtatctgcaatttaaaaacaaatacatgaa----gtaaggtttatataacttggctgaggaatcaaagaagaa |
190 |
Q |
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| T |
39204593 |
aaagctgtccaagtttctagctgcaattccataacaaagacatgaatgagttgatgtttatataacttggctgaggaatcaaagtagaa |
39204681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 388 - 477
Target Start/End: Original strand, 12631362 - 12631448
Alignment:
| Q |
388 |
ctggggaaaagtttatgaatta--attggttagatactttcaaaatgagtctaagaaaaattatatatagtatagtaatttgagtttgataa |
477 |
Q |
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| T |
12631362 |
ctgggaaaaagtttatgaattattattggttagatactttcaaaatgagtctaagaaaaattatatata-----gtaatttgagtttgataa |
12631448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 506 - 544
Target Start/End: Original strand, 12631445 - 12631483
Alignment:
| Q |
506 |
ataataataagacaattatatataaacattgtaaacgaa |
544 |
Q |
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| T |
12631445 |
ataataataagacaattatatataaacattgtaaacgaa |
12631483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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