View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4979-Insertion-4 (Length: 539)
Name: NF4979-Insertion-4
Description: NF4979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4979-Insertion-4 |
 | |
|
| [»] chr3 (7 HSPs) |
| |
|
| [»] chr7 (9 HSPs) |
| |
|
| [»] scaffold0089 (1 HSPs) |
| | |
|
| [»] scaffold0548 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 205 - 539
Target Start/End: Original strand, 6099746 - 6100079
Alignment:
| Q |
205 |
tattaaaggtttggtaaacaaaggtccatgcgatgaatgttacaagtataattcatgagttattcgtcgagaacttgatccttggacacaactattttga |
304 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6099746 |
tattaaaggtttggtaaacaa-ggtccatgcgatgaatgttacaagtataattcatgagttattcgtcgagaacttgatccttggagacaactattttgc |
6099844 |
T |
|
| Q |
305 |
agactgtgtatgaacttacaaattccatatccttggtttactaatgtgtgacatgaaatttactaaagttggaatgctttgaatgattgttttgtagttt |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6099845 |
agactgtgtatgaacttacaaattccatatccttggtttactaatgtgtgacatgaaatttactaaagttggaatgctttgaatgattgttttgtagttt |
6099944 |
T |
|
| Q |
405 |
aaaagagcatgaaaacataatgacaaagtatgtgtttgtaattaggcaccctgatgtaatttcctttgctgaaattgttgttaccatcccaattgtactc |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6099945 |
aaaagagcatgaaaacataatgacaaagtatgtgtttgtaattaggcaccctgatgtaatttcctttgctgaaattgttgttaccatcccaattgtactc |
6100044 |
T |
|
| Q |
505 |
ttatttgccttttcatttgcttctaattggttttc |
539 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
6100045 |
ttatttgccttttcatttgcttctaattggttttc |
6100079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 8 - 197
Target Start/End: Complemental strand, 15103194 - 15103005
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
|||| |||||| ||||||||||||| || |||||||||||||||| |||||||| ||||||||| |||||||||||| | ||||||||||||||| || | |
|
|
| T |
15103194 |
actaccacaattttggcttttaatagcacaattttaatagcgtttctggataaatgctattaaaaatgcaactcataaacctgttatagcactttacaga |
15103095 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgttaaaaacttggttagatagcgcttttttgtaaaagctattattttggttcgcactaatagcgtttttcag |
197 |
Q |
| |
|
||| ||||||||||||||| |||||||| |||||||||||||||||| |||| |||||| |||||||| |||||||||||| ||||||| |
|
|
| T |
15103094 |
aagcgctaagaaaaacatgataaaaactaggttagatagcgctttttcataaacgctattgttttggtttgcactaatagcgcttttcag |
15103005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 13372030 - 13371844
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
|||| |||||| |||| |||||||| |||||||||||||||| || || ||||||||||||||| |||||||| || || |||||||||| |||||| | |
|
|
| T |
13372030 |
actaccacaattttggtttttaatagcataattttaatagcgcttttgaataaacgctattaaaaatgcaacttatggacctgttatagcggttttcaga |
13371931 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgttaaaaacttggttagatagcgcttttttgtaaaagctattattttggttcgcactaatagcgttttt |
194 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
13371930 |
aagcgctaagaaaaacatgttaaaaactgggttagatagcgcttttctataaaagctattattttggtttgcactaatagcgctttt |
13371844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 152
Target Start/End: Original strand, 20129454 - 20129586
Alignment:
| Q |
20 |
ttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcataaagagctaagaa |
119 |
Q |
| |
|
||||||||||||| || |||||||||||| ||||| |||||| ||||||||| |||||| | ||||| ||||||||||||| |||| |||| | ||| || |
|
|
| T |
20129454 |
ttggcttttaatagcacaattttaatagcttttatagataaatgctattaaaaatgcaaattatagacctgttatagcactcttcagaaagcgttaaaaa |
20129553 |
T |
|
| Q |
120 |
aaacatgttaaaaacttggttagatagcgcttt |
152 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||| |
|
|
| T |
20129554 |
aaacttgtaaaaaactaggttagatagcgcttt |
20129586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 8 - 153
Target Start/End: Complemental strand, 15097437 - 15097292
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
||||||||||| |||| |||||||| ||||| |||||| || ||||||||||| |||||| || | || || || |||||||||||||||||||| | | |
|
|
| T |
15097437 |
actatcacaattttggtttttaatagcataagtttaatggctcttatggataaatgctattgaaaacgccacccacagatctgttatagcactttttaga |
15097338 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgttaaaaacttggttagatagcgctttt |
153 |
Q |
| |
|
||| |||||||||||||||||||||| | ||||||| |||||||| |
|
|
| T |
15097337 |
aagggctaagaaaaacatgttaaaaattaagttagatggcgctttt |
15097292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 43 - 171
Target Start/End: Original strand, 52613054 - 52613182
Alignment:
| Q |
43 |
aatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttag |
142 |
Q |
| |
|
||||||| || |||||||| |||||| || |||| || | ||| |||||||||||||||| | |||| ||||||||||||| |||||||||| |||||| |
|
|
| T |
52613054 |
aatagcgcttctggataaatgctattgaaaatgccaccgagagacctgttatagcactttttagaaagcgctaagaaaaacacgttaaaaactaggttag |
52613153 |
T |
|
| Q |
143 |
atagcgcttttttgtaaaagctattattt |
171 |
Q |
| |
|
||||||||||| ||||| | |||||||| |
|
|
| T |
52613154 |
atagcgcttttcggtaaacgatattattt |
52613182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 80 - 200
Target Start/End: Complemental strand, 19911268 - 19911148
Alignment:
| Q |
80 |
tcatagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgcttttttgtaaaagctattattttggttcgc |
179 |
Q |
| |
|
||||||| ||||| |||||||||||||| ||||| |||||| ||||||||| | ||||||||| ||||||| | ||| ||||||||| |||||| |
|
|
| T |
19911268 |
tcatagacatgttagagcacttttcataatacgctaaaaaaaacttgttaaaaattgggttagataacgcttttgtataagcgctattattctggttcat |
19911169 |
T |
|
| Q |
180 |
actaatagcgtttttcagaaa |
200 |
Q |
| |
|
|||||||||| |||| ||||| |
|
|
| T |
19911168 |
actaatagcgctttttagaaa |
19911148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 2e-90; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 205 - 539
Target Start/End: Complemental strand, 28055809 - 28055468
Alignment:
| Q |
205 |
tattaaaggtttggtaaacaaaggtccatgcgatgaatgttacaagtataattcatgagttattcgtcgagaacttgatccttggac-acaactattttg |
303 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||| |||||||| | |||| ||||||||| |||| |||||||||||||||| |||||||||||| |
|
|
| T |
28055809 |
tattaatggtttggtaaaacaaggtccatgcgatgaatattacaagtgtcattcctgagttatttgtcgggaacttgatccttggaatacaactattttg |
28055710 |
T |
|
| Q |
304 |
aagactgtgtatgaacttacaaattccatatccttggtttactaatgtgtg-------acatgaaatttactaaagttggaatgctttgaatgattgttt |
396 |
Q |
| |
|
|||| ||||||||||||| || ||| | |||| ||||||||||||||| || | |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28055709 |
cagaccatgtatgaacttacgaactccttttcctaggtttactaatgtgttgttgtcaactcggaatttactaaaggtggaatgctttgaatgattgttt |
28055610 |
T |
|
| Q |
397 |
tgtagtttaaaagagcatgaaaacataatgacaaagtatgtgtttgtaattaggcaccctgatgtaatttcctttgctgaaattgttgttaccatcccaa |
496 |
Q |
| |
|
|||||||||||||||||| |||| | |||||||||| ||| |||||||||| ||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
28055609 |
tgtagtttaaaagagcataaaaatagaatgacaaagcatgcgtttgtaattgagcaccctgatgtaatttcctttgctgagatcgttgttaccatcccaa |
28055510 |
T |
|
| Q |
497 |
ttgtactcttatttgccttttcatttgcttctaattggttttc |
539 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28055509 |
tttta-tcttatttgccttttcatttgcttctaattggttttc |
28055468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 8 - 188
Target Start/End: Complemental strand, 23925873 - 23925693
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
|||| |||||| ||||||||||||| || ||||||||||||||||||||||||| ||||| ||| |||||| ||||||| |||||||| | |||| |||| |
|
|
| T |
23925873 |
actaccacaattttggcttttaatagcacaattttaatagcgtttatggataaatgctatgaaaaatgcaaatcatagacctgttataacgctttacata |
23925774 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgttaaaaacttggttagatagcgcttttttgtaaaagctattattttggttcgcactaatagc |
188 |
Q |
| |
|
||| ||||||||||| ||||||||||| ||||||||||||||||| | ||| ||||||||| | |||| |||||||||| |
|
|
| T |
23925773 |
aagcgctaagaaaaatttgttaaaaactgggttagatagcgcttttgtataagcgctattattctagttcacactaatagc |
23925693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 8 - 200
Target Start/End: Complemental strand, 24501781 - 24501589
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
|||| |||||| ||||||||||||| || |||||||||||||||| |||||||| ||||||||| |||||| | ||||| |||||||||||| |||| | |
|
|
| T |
24501781 |
actaccacaattttggcttttaatagcacaattttaatagcgtttttggataaatgctattaaaaatgcaaattatagacctgttatagcacccttcaga |
24501682 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgttaaaaacttggttagatagcgcttttttgtaaaagctattattttggttcgcactaatagcgtttttcagaaa |
200 |
Q |
| |
|
|| ||||| |||| | ||||||||||| ||||||||||||||||| | ||| ||||||||| | ||||| |||||||||| |||| ||||| |
|
|
| T |
24501681 |
aaacgctaaaaaaagcttgttaaaaactgggttagatagcgcttttctataagtgctattattcttgttcgtactaatagcgcttttaagaaa |
24501589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 22938858 - 22939043
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
|||| |||||| | ||||||||||| || |||||||||||| ||| |||||||||||||||||| ||||||| ||||| ||||||||||||||| || | |
|
|
| T |
22938858 |
actaccacaatttgggcttttaatagcacaattttaatagcatttttggataaacgctattaaaaatgcaacccataggcctgttatagcactttgcaga |
22938957 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgttaaaaacttggttagatagcgcttttttgtaaaagctattattttggttcgcactaatagcgtttt |
193 |
Q |
| |
|
||| |||||||||||| | || |||| | ||||||||||||||||| | | ||||||| ||| ||| |||||||||||||||| |
|
|
| T |
22938958 |
aagcgctaagaaaaactttttgaaaaatgggttagatagcgcttttcggcgagcgctattagttttgttggcactaatagcgtttt |
22939043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 8 - 153
Target Start/End: Complemental strand, 27289171 - 27289026
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
|||| |||||| ||||||||||||| || |||||||||| | ||| |||||||| ||||||||| |||||| ||||| ||||||||||||||| || | |
|
|
| T |
27289171 |
actaccacaattttggcttttaatagcacaattttaataacatttttggataaatgctattaaaaatgcaatccataggcctgttatagcactttgcaaa |
27289072 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgttaaaaacttggttagatagcgctttt |
153 |
Q |
| |
|
||| |||||||||||| | ||||||| | ||||||||||||||||| |
|
|
| T |
27289071 |
aagcgctaagaaaaactttttaaaaaatgggttagatagcgctttt |
27289026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 21740441 - 21740320
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
||||||||||| ||||||||||||| || ||||||||||| ||| || |||| ||||||||| |||||| | ||||| |||||||||||||||||| | |
|
|
| T |
21740441 |
actatcacaattttggcttttaatagca--attttaatagcatttttgaataactgctattaaaaatgcaatttatagacctgttatagcacttttcaga |
21740344 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgttaaa |
131 |
Q |
| |
|
||| | |||||||||||||||||| |
|
|
| T |
21740343 |
aagcgttaagaaaaacatgttaaa |
21740320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 21739317 - 21739259
Alignment:
| Q |
128 |
taaaaacttggttagatagcgcttttttgtaaaagctattattttggttcgcactaata |
186 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||| ||||||||||||||| ||||||||| |
|
|
| T |
21739317 |
taaaaactgggttagatagcgcttttctataaacgctattattttggtttgcactaata |
21739259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 11513073 - 11513023
Alignment:
| Q |
94 |
tagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagat |
144 |
Q |
| |
|
|||||||||| | |||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
11513073 |
tagcactttttagaaagcgctaagaaaaacatgttaaaaactgggttagat |
11513023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 11506346 - 11506300
Alignment:
| Q |
98 |
acttttcataaagagctaagaaaaacatgttaaaaacttggttagat |
144 |
Q |
| |
|
|||||| | |||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
11506346 |
actttttagaaagcgctaagaaaaacatgttaaaaactaggttagat |
11506300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 4e-64; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 36478701 - 36478893
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
|||| |||||| ||||||||||||| ||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
36478701 |
actaccacaattttggcttttaatagcataattttaacagcttttatggataaatgctattaaagatgcaactcatagatctattatagcacttttcaga |
36478800 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgttaaaaacttggttagatagcgcttttttgtaaaagctattattttggttcgcactaatagcgtttttcagaaa |
200 |
Q |
| |
|
||| ||||| ||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
36478801 |
aagcgctaaaaaagacatgttaaaaactgggttagatagcatttttttgtaaacgctattattttggttcgcactaatagcgctttttagaaa |
36478893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 17176038 - 17176216
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
|||| |||||| ||||||||||||| ||||||||||||||||||| |||||||| ||||||||| |||||||||||||| || ||||||||||||||| | |
|
|
| T |
17176038 |
actaccacaattttggcttttaatagcataattttaatagcgtttctggataaatgctattaaaaatgcaactcatagacctattatagcacttttcaga |
17176137 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgttaaaaacttggttagatagcgcttttttgtaaaagctattattttggttcgcactaata |
186 |
Q |
| |
|
||| |||||| ||||| ||||||||| | |||||||||||||||| |||| ||||||||| | ||| ||||||||| |
|
|
| T |
17176138 |
aagcgctaaggaaaacttgttaaaaattgggttagatagcgctttcccataaatgctattattgttgtttgcactaata |
17176216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 41944037 - 41944177
Alignment:
| Q |
13 |
cacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatc---tgttatagcacttttcataaa |
109 |
Q |
| |
|
|||||| || |||||||||| || |||||||||| |||||||| ||||| ||||||||| | |||||||||||| | ||||||||||||||| | | | |
|
|
| T |
41944037 |
cacaattttagcttttaatagcacaattttaataacgtttatgaataaatgctattaaataggcaactcatagacctgttgttatagcactttttagata |
41944136 |
T |
|
| Q |
110 |
gagctaagaaaaacatgttaaaaacttggttagatagcgct |
150 |
Q |
| |
|
|||| ||||| ||| ||||||||| |||||||||||||| |
|
|
| T |
41944137 |
acgctacgaaaagcatattaaaaactgggttagatagcgct |
41944177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0089 (Bit Score: 115; Significance: 4e-58; HSPs: 1)
Name: scaffold0089
Description:
Target: scaffold0089; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 32777 - 32963
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
|||| |||||| ||||||||||||| ||||||||||||||||||| || ||||| ||||||||| |||||||| |||||||||||||||| |||||| | |
|
|
| T |
32777 |
actaccacaattttggcttttaatagcataattttaatagcgtttttgaataaatgctattaaaaatgcaacttatagatctgttatagcggttttcaga |
32876 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgttaaaaacttggttagatagcgcttttttgtaaaagctattattttggttcgcactaatagcgttttt |
194 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||||||||||| | |||| ||||||||||||||| |||||||||||| |||| |
|
|
| T |
32877 |
aagcgctaagaaaaacatgttaaaaactgggttagatagcgcttttctataaacgctattattttggtttgcactaatagcgctttt |
32963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0548 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: scaffold0548
Description:
Target: scaffold0548; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 8 - 197
Target Start/End: Original strand, 9810 - 9999
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
|||| |||||| ||||||||||||| || |||||||||||||||| |||||||| ||||||||| |||||||||||| | ||||||||||||||| || | |
|
|
| T |
9810 |
actaccacaattttggcttttaatagcacaattttaatagcgtttctggataaatgctattaaaaatgcaactcataaacctgttatagcactttacaga |
9909 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgttaaaaacttggttagatagcgcttttttgtaaaagctattattttggttcgcactaatagcgtttttcag |
197 |
Q |
| |
|
||| ||||||||||||||| |||||||| |||||||||||||||||| |||| |||||| |||||||| |||||||||||| ||||||| |
|
|
| T |
9910 |
aagcgctaagaaaaacatgataaaaactaggttagatagcgctttttcataaacgctattgttttggtttgcactaatagcgcttttcag |
9999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 6813847 - 6814040
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
|||| |||||| ||||||||||||| | ||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||| ||||||| | |
|
|
| T |
6813847 |
actaccacaattttggcttttaatagcgcaattttaatagcgtttatggataaaagctattaaaaatgcaactcataggcctgttatagcgcttttcaga |
6813946 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgttaaaaacttggttagatagcgcttttttgtaaaagctattattttggttcgcactaatagcgtttttcagaaac |
201 |
Q |
| |
|
||| |||||||||||||||||||||| | |||||||||||||||| | |||| |||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
6813947 |
aagcgctaagaaaaacatgttaaaaattgggttagatagcgctttcctataaacactattattttggttcggactaatagcgcttttcagaaac |
6814040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 119
Target Start/End: Original strand, 16230247 - 16230358
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
|||| |||||| ||||||||||||| || |||||||||||||||| | |||||| ||||||||| |||||||||| || ||||||||||||||| || | |
|
|
| T |
16230247 |
actaccacaattttggcttttaatagcacaattttaatagcgtttctagataaatgctattaaaaatgcaactcacaggcctgttatagcactttgcaga |
16230346 |
T |
|
| Q |
108 |
aagagctaagaa |
119 |
Q |
| |
|
||| || ||||| |
|
|
| T |
16230347 |
aagcgccaagaa |
16230358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 25043352 - 25043166
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
|||| |||||| |||| ||||||| || || ||||||||||||| | ||||||||||||| | |||||| | |||||||| |||||||||| || | |
|
|
| T |
25043352 |
actaccacaattttggtctttaatagcacaaatttaatagcgtttctacataaacgctattacaaatgcaaattatagatctattatagcactccgcaga |
25043253 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgttaaaaacttggttagatagcgcttttttgtaaaagctattattttggttcgcactaatagcgttttt |
194 |
Q |
| |
|
||| ||||| |||||| ||| ||| || ||||||||||||||||| | ||| ||||||||| | |||| ||||||||||| |||| |
|
|
| T |
25043252 |
aagcgctaaaaaaaacttgtaaaaccctgggttagatagcgcttttctttaagcgctattattcttgttcacactaatagcgctttt |
25043166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 37941433 - 37941578
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||||| |||||||| ||||||||| |||||||||||| | ||||||||||||||| || | |
|
|
| T |
37941433 |
actatcacaattttggcttttaatagcataattttaatagcgtttctggataaatgctattaaaaatgcaactcataaacctgttatagcactttacaga |
37941532 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgttaaaaacttggttagatagcgctttt |
153 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
37941533 |
aagagctaagaaaaacatgttaaaagctgggttagatagcgctttt |
37941578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 3311903 - 3312095
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
|||| |||||| ||||||||||||| || ||||| ||||||| | |||||||||||||||||| ||||||| |||||| |||||||||| |||| || | |
|
|
| T |
3311903 |
actaccacaattttggcttttaatagcacaatttcaatagcgcatctggataaacgctattaaaaatgcaacccatagacctgttatagcgctttacaga |
3312002 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgttaaaaacttggttagatagcgcttttttgtaaaagctattattttggttcgcactaatagcgtttttcagaaa |
200 |
Q |
| |
|
||| |||||||||||| |||| |||| | | ||||| ||||| || || || |||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
3312003 |
aagtgctaagaaaaacttgtttaaaattggactagatggcgctcttctgcaagcgctattattttggttcacactaatagcgcttttcagaaa |
3312095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 45837654 - 45837842
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
|||| |||||| ||||||||||||| || |||||||||||| || |||||||| ||||||||| ||||||| |||||| ||||||||||||||||| | |
|
|
| T |
45837654 |
actaccacaattttggcttttaatagcacaattttaatagcccttctggataaatgctattaaaaatgcaacccatagacgtgttatagcacttttcaga |
45837753 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgttaaaaacttggttagatagcgcttttttgtaaaagctattattttggttcgcactaatagcgtttttca |
196 |
Q |
| |
|
||| |||||||||||| ||||||||| | | ||||||||||| || || ||| || |||||||||| | ||||||||||| |||||| |
|
|
| T |
45837754 |
aagcgctaagaaaaacttgttaaaaattggactagatagcgctcttctgcaaacactgttattttggtgcacactaatagcgcttttca |
45837842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 8 - 200
Target Start/End: Complemental strand, 49947255 - 49947063
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
|||| |||||| ||| ||||||||| || |||||||||||||||| | |||||| ||||||||| |||||| | ||||| |||||||| |||| |||| | |
|
|
| T |
49947255 |
actaccacaattttgtcttttaatagcacaattttaatagcgtttttagataaatgctattaaaaatgcaaattatagacctgttataacactcttcaga |
49947156 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgttaaaaacttggttagatagcgcttttttgtaaaagctattattttggttcgcactaatagcgtttttcagaaa |
200 |
Q |
| |
|
||| ||||| |||| | ||| ||||||| ||||||||||||||||| | ||| ||||||||| | ||||| |||||||||| |||| ||||| |
|
|
| T |
49947155 |
aagcgctaaaaaaagcttgtgaaaaactgggttagatagcgcttttctataagcgctattattcttgttcgtactaatagcgcttttaagaaa |
49947063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 25040416 - 25040359
Alignment:
| Q |
14 |
acaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaa |
71 |
Q |
| |
|
||||| |||| |||||||| | |||||||||||| |||||||||||||||||||||| |
|
|
| T |
25040416 |
acaattttggtttttaatagcgcaattttaatagcttttatggataaacgctattaaa |
25040359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 22197917 - 22198109
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
|||| |||||| |||||||| |||| || ||||||||||||| ||||||||||||||||||||| | |||| |||||| |||||||||||||||| | | |
|
|
| T |
22197917 |
actaccacaattttggctttaaatagcacaattttaatagcggttatggataaacgctattaaaaaa-caacgcatagacctgttatagcacttttaaga |
22198015 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgttaaaaacttggttagatagcgcttttttgtaaaagctattattttggttcgcactaatagcgtttttcagaaac |
201 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||||| |||| || | || ||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
22198016 |
aagcgctaagaaaaacatgttaaaaactaggttagatagcactttcttatgaacgctattattttggtttgcactaatagcgcttttcagaaac |
22198109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 12630288 - 12630102
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
|||| |||||| ||| ||||||||| || |||||||||||||||| ||||||| ||||||||| |||||| | ||||| ||||||||||||| |||| | |
|
|
| T |
12630288 |
actaccacaattttgacttttaatagcacaattttaatagcgtttttggataagtgctattaaaaatgcaaattatagacctgttatagcactcttcaga |
12630189 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgttaaaaacttggttagatagcgcttttttgtaaaagctattattttggttcgcactaatagcgttttt |
194 |
Q |
| |
|
|| ||||| |||||| ||| ||||| | ||||||||||||||||| | ||| ||||||||| | |||||||||||||||| |||| |
|
|
| T |
12630188 |
aaatgctaaaaaaaacttgtaaaaaattgggttagatagcgcttttctataagtgctattattcttgttcgcactaatagcgctttt |
12630102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 33737168 - 33736982
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
|||| |||||| ||||| ||||||| || |||||||||||||||| | ||||| ||||||||| |||||| | ||||| || |||||||||| | || | |
|
|
| T |
33737168 |
actaccacaattttggcctttaatagcacaattttaatagcgtttctacataaatgctattaaaaatgcaaattatagacctattatagcactctgcaga |
33737069 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgttaaaaacttggttagatagcgcttttttgtaaaagctattattttggttcgcactaatagcgttttt |
194 |
Q |
| |
|
||| ||||| |||||| ||| ||||||| ||||||||||||||||| | ||| ||||||||| | |||| ||||||||||| |||| |
|
|
| T |
33737068 |
aagcgctaaaaaaaacttgtaaaaaactgggttagatagcgcttttctataagcgctattattcttgttcacactaatagcgctttt |
33736982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 8e-44; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 20511834 - 20512012
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
|||| |||||| ||||||||||||| ||||||||||||||||||| || ||||| ||||||||| |||||||| ||||| |||||||||| |||||| | |
|
|
| T |
20511834 |
actaacacaattttggcttttaatagcataattttaatagcgtttttgaataaatgctattaaaaatgcaacttatagacctgttatagcggttttcaga |
20511933 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgttaaaaacttggttagatagcgcttttttgtaaaagctattattttggttcgcactaata |
186 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||| ||||||||| | |||| ||||||||||| || ||||||||| |
|
|
| T |
20511934 |
aagcactaagaaaaacatgttaaaaactaggttagacagcgcttttctataaacactattattttgatttgcactaata |
20512012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 8 - 200
Target Start/End: Complemental strand, 16729820 - 16729628
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
|||| |||||| ||||||||||||| || |||||||||||||||| |||||||| ||||||||| |||||| | ||||| ||||||||||||| |||| | |
|
|
| T |
16729820 |
actaccacaattttggcttttaatagcacaattttaatagcgtttttggataaaagctattaaaaatgcaaattatagacctgttatagcactcttcaga |
16729721 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgttaaaaacttggttagatagcgcttttttgtaaaagctattattttggttcgcactaatagcgtttttcagaaa |
200 |
Q |
| |
|
||| ||||| |||| | ||| ||||||| ||||| ||||||||||| | ||| | ||||||| | ||||| |||||||||| |||| ||||| |
|
|
| T |
16729720 |
aagcgctaaaaaaagcttgtgaaaaactgggttacatagcgcttttctataagtgatattattcttgttcgtactaatagcgcttttaagaaa |
16729628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 22474619 - 22474433
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
|||| |||||| ||||||||||||| || |||||||||||||||| || ||||| ||||||||| ||| || | ||||| || |||||||||| | || | |
|
|
| T |
22474619 |
actaccacaattttggcttttaatagcacaattttaatagcgtttctgcataaaagctattaaaaatgtaaattatagacctattatagcactctgcaga |
22474520 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgttaaaaacttggttagatagcgcttttttgtaaaagctattattttggttcgcactaatagcgttttt |
194 |
Q |
| |
|
||| ||||| |||||| ||| ||||| | ||||||||||||||||| | ||| ||||||||| | |||||||||||||||| |||| |
|
|
| T |
22474519 |
aagcgctaaaaaaaacttgtaaaaaattgggttagatagcgcttttctataagcgctattattcttgttcgcactaatagcgctttt |
22474433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 33292523 - 33292415
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
|||| |||||| ||||||||||||| || |||||||||||||||| |||||||| ||||||||| |||||| | ||||||||||||||||||| |||| | |
|
|
| T |
33292523 |
actaccacaattttggcttttaatagcacaattttaatagcgtttttggataaatgctattaaaaatgcaaattatagatctgttatagcactcttcaga |
33292424 |
T |
|
| Q |
108 |
aagagctaa |
116 |
Q |
| |
|
||| ||||| |
|
|
| T |
33292423 |
aagcgctaa |
33292415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 8e-44; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 17943316 - 17943130
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
|||| |||||| ||||||||||||| ||| ||||||||||||||| |||||||| ||||||||| |||||||||||||| |||||||||||||||||| | |
|
|
| T |
17943316 |
actaccacaattttggcttttaatagcattattttaatagcgtttctggataaatgctattaaaaatgcaactcatagacctgttatagcacttttcaga |
17943217 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgttaaaaacttggttagatagcgcttttttgtaaaagctattattttggttcgcactaatagcgttttt |
194 |
Q |
| |
|
||| |||||| ||||| ||||||||| | | ||||||||||||||| ||| ||||||||| | ||||||| |||||||| |||| |
|
|
| T |
17943216 |
aagcgctaaggaaaacttgttaaaaattggattagatagcgcttttcctgaaacgctattattattgttcgcattaatagcgctttt |
17943130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 20027663 - 20027850
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
|||| |||||| ||||||||||||| | ||||||||||||||||| || ||||| ||||||||| |||||||| |||| |||||| ||| |||||| | |
|
|
| T |
20027663 |
actaccacaattttggcttttaatagcgtaattttaatagcgtttttgaataaatgctattaaaaatgcaacttatagtcctgttaaagctgttttcaaa |
20027762 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgtt-aaaaacttggttagatagcgcttttttgtaaaagctattattttggttcgcactaatagcgttttt |
194 |
Q |
| |
|
||| || |||||||||||||| ||||||| ||||||||||||||||||| ||| ||||||||||||||| |||||||||||| |||| |
|
|
| T |
20027763 |
aagcgccaagaaaaacatgttaaaaaactgggttagatagcgcttttttataagcgctattattttggtttgcactaatagcgctttt |
20027850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 32664375 - 32664561
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
|||| |||||| ||||||||||||| ||| ||||||||||||||| |||||||| ||||||||| |||||||||||| | |||||||||||||||||| | |
|
|
| T |
32664375 |
actaccacaattttggcttttaatagcattattttaatagcgtttctggataaatgctattaaaaatgcaactcataaacctgttatagcacttttcaga |
32664474 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgttaaaaacttggttagatagcgcttttttgtaaaagctattattttggttcgcactaatagcgttttt |
194 |
Q |
| |
|
||| |||||| ||||| ||||||||| | ||||||||||||||||| ||| ||||||||| | ||| ||| |||||||| |||| |
|
|
| T |
32664475 |
aagcgctaaggaaaacttgttaaaaattgggttagatagcgcttttcctgaaacgctattattattgtttgcattaatagcgctttt |
32664561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 8 - 188
Target Start/End: Complemental strand, 17010019 - 17009839
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
|||| |||||| ||||||||||||| || |||||||||||||||| |||||||| ||||||||| |||||| | ||||| ||||||||||||| |||| | |
|
|
| T |
17010019 |
actaccacaattttggcttttaatagcacaattttaatagcgtttttggataaatgctattaaaaatgcaaattatagacctgttatagcactcttcaga |
17009920 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgttaaaaacttggttagatagcgcttttttgtaaaagctattattttggttcgcactaatagc |
188 |
Q |
| |
|
||| ||||| |||| | ||||||||||| ||||||||||||||||| | ||| ||||||||| | ||||| ||||||||| |
|
|
| T |
17009919 |
aagcgctaaaaaaagcttgttaaaaactgggttagatagcgcttttctataagtgctattattcttgttcgtactaatagc |
17009839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 8376067 - 8376202
Alignment:
| Q |
8 |
actatcacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcata |
107 |
Q |
| |
|
|||| |||||| |||| |||||||| || |||||||||||||||| || ||||| ||||||||| |||||||| ||||| |||||||||||||||||| | |
|
|
| T |
8376067 |
actaccacaattttggattttaatagcacaattttaatagcgtttttgaataaatgctattaaaaatgcaacttatagacctgttatagcacttttcaga |
8376166 |
T |
|
| Q |
108 |
aagagctaagaaaaacatgttaaaaacttggttaga |
143 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
8376167 |
aagcgctaagaaaaacatgttaaaaactgggttaga |
8376202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 8376341 - 8376220
Alignment:
| Q |
13 |
cacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcataaagag |
112 |
Q |
| |
|
|||||| ||||||||||||| || || |||||||||| || | |||||| |||||| || ||||||| |||||| |||||||||||||||||| |||| | |
|
|
| T |
8376341 |
cacaatattggcttttaatagcacaagtttaatagcgcttctagataaatgctattgaaaatgcaacccatagacctgttatagcacttttcagaaagcg |
8376242 |
T |
|
| Q |
113 |
ctaagaaaaacatgttaaaaac |
134 |
Q |
| |
|
|||||||||||| || |||||| |
|
|
| T |
8376241 |
ctaagaaaaacaagtgaaaaac |
8376220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 36516949 - 36517067
Alignment:
| Q |
14 |
acaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcataaagagc |
113 |
Q |
| |
|
||||| ||||| ||||||| || |||||||||||| ||||||||||| ||||||||| | |||||||||||| ||||||||||||||| | |||| || |
|
|
| T |
36516949 |
acaattttggcctttaatagcacaattttaatagcacttatggataaatgctattaaaaaggcaactcatagacctgttatagcactttcaaaaaagcgc |
36517048 |
T |
|
| Q |
114 |
taagaaaaacatgttaaaa |
132 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
36517049 |
taagaaaaatttgttaaaa |
36517067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 14481698 - 14481871
Alignment:
| Q |
13 |
cacaatcttggcttttaataacataattttaatagcgtttatggataaacgctattaaagatgcaactcatagatctgttatagcacttttcataaagag |
112 |
Q |
| |
|
|||||| ||||| ||||||| || |||||||||||||||| | ||||| ||||||||| || ||| | ||||| || |||||||||| | || |||| | |
|
|
| T |
14481698 |
cacaattttggcctttaatagcacaattttaatagcgtttgtacataaaagctattaaaaatacaaattatagacctattatagcactctgcagaaagcg |
14481797 |
T |
|
| Q |
113 |
ctaagaaaaacatgttaaaaacttggttagatagcgcttttttgtaaaagctattattttggttcgcactaatag |
187 |
Q |
| |
|
|||| ||||| ||| ||||||| ||||||||||||||||| | ||| || |||||| | |||| ||||||||| |
|
|
| T |
14481798 |
ctaa-aaaaaattgtaaaaaactgggttagatagcgcttttctataagcgccattattcttgttcacactaatag |
14481871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 10497236 - 10497280
Alignment:
| Q |
39 |
ttttaatagcgtttatggataaacgctattaaagatgcaactcat |
83 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| ||||||||||| |
|
|
| T |
10497236 |
ttttaatagcgcttatggataaatgctattaaaaatgcaactcat |
10497280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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