View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4979-Insertion-5 (Length: 398)
Name: NF4979-Insertion-5
Description: NF4979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4979-Insertion-5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 8 - 398
Target Start/End: Original strand, 52807338 - 52807731
Alignment:
| Q |
8 |
gacaagcctattgagtttaccaacatcacttggtgttaattctttttgaaaaagtagttgtgtgcaagaaaattgttcctcacccttcacccctataaca |
107 |
Q |
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| T |
52807338 |
gacaagcctattgagtttaccaacatcacttggtgttaattctttttgaaaaagtagttgtgtgcaagaaaattgttcctcatccttcacccctataaca |
52807437 |
T |
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| Q |
108 |
acaccttctttgcctgcaccttggc---tttcattatttctaagaaatgttgttgcaaaattagaggggtatgttccatttctaatcatgatcataattg |
204 |
Q |
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| T |
52807438 |
acaccttctttgcctgcaccttggcgcctttcattatttctaagaaatgttgttgcaaaattagaggggtatgttccatttctaatcatgatcataattg |
52807537 |
T |
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| Q |
205 |
tttccatgttatattgactttgaaacataggttcttcaactgtttggttattccatgcaaagtttctatggctttctctgcttctgagcttaatggtggc |
304 |
Q |
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| T |
52807538 |
tttccatgctatattgactttgaaacataggttcttgaactgtttggttattccatgcaaagtttctatggctttctctgcttctgagcttaatggtggc |
52807637 |
T |
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| Q |
305 |
gctgtcgtaagccatggcagcatctctttcagatttgaatgtccctaaccatattctttggtgatttgcatatatttgtgcaccccaatgtcca |
398 |
Q |
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| T |
52807638 |
gctgtcgtaagccatggcagcatctctttcagatttgaatgtccctaaccatattctttggtgatttgcatatatttgtgcaccccaatgtcca |
52807731 |
T |
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