View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4979-Insertion-6 (Length: 155)
Name: NF4979-Insertion-6
Description: NF4979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4979-Insertion-6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 3e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 3e-80
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 29527920 - 29527766
Alignment:
| Q |
1 |
cccaacagcaccaccagtagagtaccttgcataacacttccccaagaacatatctccataatccccagaagtacaatcatttctcaaccgtcggattgcc |
100 |
Q |
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| T |
29527920 |
cccaccagcaccaccagtagagtaccttgcataacacttccccaagaacatatctccataatccccagaagtacaatcatttctcaaccgtcggattgcc |
29527821 |
T |
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| Q |
101 |
tctgtaacacaatcttgacactccacaaaactcaaatccccaacacactgtgcca |
155 |
Q |
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| T |
29527820 |
tctgtaacacaatcttgacactccacaaaactcaaatccccaacacactgtgcca |
29527766 |
T |
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Target: chr5 (Bit Score: 48; Significance: 9e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 9e-19
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 33328009 - 33327878
Alignment:
| Q |
11 |
ccaccagtagagtaccttgcataacacttccccaagaacatatctccataatccccagaagtacaatcatttctcaaccgtcggattgcctctgtaacac |
110 |
Q |
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| T |
33328009 |
ccaccagtagaatatcttgcataacattttcccaagaacaaatctccataatctgcagtaccacaatcacttttcaaccgtccgatcgcttcaacaacac |
33327910 |
T |
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| Q |
111 |
aatcttgacactccacaaaactcaaatcccca |
142 |
Q |
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| T |
33327909 |
aatcttgacactccccaaaactaagatcccca |
33327878 |
T |
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