View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4979_high_1 (Length: 368)
Name: NF4979_high_1
Description: NF4979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4979_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 6 - 350
Target Start/End: Original strand, 31140210 - 31140559
Alignment:
| Q |
6 |
aaattattcttacacggaataattaggataggattatgcacaatcctactaacaaatgaaa-ataagagatctagaaattcaacaattcaa--caaaata |
102 |
Q |
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| T |
31140210 |
aaattattcttacacggaataattaggataggattatgcacaatcctactaacaaatgaaagataagagatctagaaattcaacaattcaaatcaaaata |
31140309 |
T |
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| Q |
103 |
tgacaatttcaaactggctgagctcattccttaactc--aaatgacttaattagagtctgtctctgagatatgttatacatagattaagaattacaaatt |
200 |
Q |
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| T |
31140310 |
tgacaatttcaaactggctgagctcattccttaactctaaaatgacttgattagagtctgtctctgagatatgttatacatagattaagaattacaaatt |
31140409 |
T |
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| Q |
201 |
taaatnnnnnnnnnnnnnctcctattttttccaacaactgacagtgtaataacatatggtaattgaacacgcctgtaatcaagttagaaccatccgacta |
300 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31140410 |
taaataaaaaaataaaaactcctattttttccaacaactgacagtgtaataacatatggtaattgaacacgcctgtaatcaagttagaaccatccgacta |
31140509 |
T |
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| Q |
301 |
caaccaccggaagtttgcaggcaatagtcagattgtcctattgaagatcc |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31140510 |
caaccaccggaagtttgcaggcaatagtcagattgtcctattgaagatcc |
31140559 |
T |
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